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Volumn 113, Issue 52, 2016, Pages 15144-15149

PMS1T, producing Phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice

Author keywords

Long noncoding RNA; PhasiRNA; Photoperiod sensitive male sterility

Indexed keywords

LONG UNTRANSLATED RNA; MICRORNA; MICRORNA 2118; PMS1T; SMALL INTERFERING RNA; UBIQUITIN; UNCLASSIFIED DRUG; PLANT PROTEIN; PLANT RNA;

EID: 85007499765     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1619159114     Document Type: Article
Times cited : (216)

References (44)
  • 1
    • 84899637850 scopus 로고    scopus 로고
    • Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs
    • Komiya R, et al. (2014) Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs. Plant J 78(3):385-397.
    • (2014) Plant J , vol.78 , Issue.3 , pp. 385-397
    • Komiya, R.1
  • 2
    • 68149119262 scopus 로고    scopus 로고
    • Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    • Johnson C, et al. (2009) Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. Genome Res 19(8):1429-1440.
    • (2009) Genome Res , vol.19 , Issue.8 , pp. 1429-1440
    • Johnson, C.1
  • 3
    • 84929380410 scopus 로고    scopus 로고
    • Noncoding RNA. PiRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production
    • Han BW, Wang W, Li C, Weng Z, Zamore PD (2015) Noncoding RNA. piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production. Science 348(6236):817-821.
    • (2015) Science , vol.348 , Issue.6236 , pp. 817-821
    • Han, B.W.1    Wang, W.2    Li, C.3    Weng, Z.4    Zamore, P.D.5
  • 4
    • 84929353775 scopus 로고    scopus 로고
    • Noncoding RNA. PiRNA-guided slicing specifies transcripts for Zucchini-dependent, phased piRNA biogenesis
    • Mohn F, Handler D, Brennecke J (2015) Noncoding RNA. piRNA-guided slicing specifies transcripts for Zucchini-dependent, phased piRNA biogenesis. Science 348(6236):812-817.
    • (2015) Science , vol.348 , Issue.6236 , pp. 812-817
    • Mohn, F.1    Handler, D.2    Brennecke, J.3
  • 5
    • 17444430392 scopus 로고    scopus 로고
    • MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
    • Allen E, Xie Z, Gustafson AM, Carrington JC (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121(2):207-221.
    • (2005) Cell , vol.121 , Issue.2 , pp. 207-221
    • Allen, E.1    Xie, Z.2    Gustafson, A.M.3    Carrington, J.C.4
  • 6
    • 33750440526 scopus 로고    scopus 로고
    • A two-hit trigger for siRNA biogenesis in plants
    • Axtell MJ, Jan C, Rajagopalan R, Bartel DP (2006) A two-hit trigger for siRNA biogenesis in plants. Cell 127(3):565-577.
    • (2006) Cell , vol.127 , Issue.3 , pp. 565-577
    • Axtell, M.J.1    Jan, C.2    Rajagopalan, R.3    Bartel, D.P.4
  • 7
    • 33847652140 scopus 로고    scopus 로고
    • Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis
    • Chen HM, Li YH, Wu SH (2007) Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. Proc Natl Acad Sci USA 104(9):3318-3323.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.9 , pp. 3318-3323
    • Chen, H.M.1    Li, Y.H.2    Wu, S.H.3
  • 8
    • 82955207556 scopus 로고    scopus 로고
    • MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    • Zhai J, et al. (2011) MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev 25(23):2540-2553.
    • (2011) Genes Dev , vol.25 , Issue.23 , pp. 2540-2553
    • Zhai, J.1
  • 9
    • 84961288187 scopus 로고    scopus 로고
    • An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
    • Arikit S, et al. (2014) An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Plant Cell 26(12):4584-4601.
    • (2014) Plant Cell , vol.26 , Issue.12 , pp. 4584-4601
    • Arikit, S.1
  • 10
    • 84924308731 scopus 로고    scopus 로고
    • Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers
    • Zhai J, et al. (2015) Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers. Proc Natl Acad Sci USA 112(10):3146-3151.
    • (2015) Proc Natl Acad Sci USA , vol.112 , Issue.10 , pp. 3146-3151
    • Zhai, J.1
  • 11
    • 84940919383 scopus 로고    scopus 로고
    • Novel and recently evolved miRNA clusters regulate expansive F-box gene networks through phasiRNAs in wild diploid strawberry
    • Xia R, Ye S, Liu Z, Meyers B, Liu Z (2015) Novel and recently evolved miRNA clusters regulate expansive F-box gene networks through phasiRNAs in wild diploid strawberry. Plant Physiol 169(1):594-610.
    • (2015) Plant Physiol , vol.169 , Issue.1 , pp. 594-610
    • Xia, R.1    Ye, S.2    Liu, Z.3    Meyers, B.4    Liu, Z.5
  • 12
    • 0001866438 scopus 로고
    • The discovery and preliminary studies of the photoperiod-sensitive recessive male sterile rice (Oryza sativa L. Subsp. Japonica)
    • Shi M (1985) The discovery and preliminary studies of the photoperiod-sensitive recessive male sterile rice (Oryza sativa L. subsp. japonica). Zhongguo Nong Ye Ke Xue 2:44-48.
    • (1985) Zhongguo Nong Ye Ke Xue , vol.2 , pp. 44-48
    • Shi, M.1
  • 13
    • 84862813608 scopus 로고    scopus 로고
    • Current situation and suggestions for development of two-line hybrid rice in China
    • Si H, Liu W, Fu Y, Sun Z, Hu G (2011) Current situation and suggestions for development of two-line hybrid rice in China. Chin J Rice Sci 25(5):544-552.
    • (2011) Chin J Rice Sci , vol.25 , Issue.5 , pp. 544-552
    • Si, H.1    Liu, W.2    Fu, Y.3    Sun, Z.4    Hu, G.5
  • 14
    • 0028059292 scopus 로고
    • Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice
    • Zhang Q, et al. (1994) Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice. Proc Natl Acad Sci USA 91(18):8675-8679.
    • (1994) Proc Natl Acad Sci USA , vol.91 , Issue.18 , pp. 8675-8679
    • Zhang, Q.1
  • 15
    • 0033370181 scopus 로고    scopus 로고
    • Mapping and genetic analysis of the genes for photoperiod-sensitive genic male sterility in rice using the original mutant Nongken 58S
    • Mei M, Dai X, Xu C, Zhang Q (1999) Mapping and genetic analysis of the genes for photoperiod-sensitive genic male sterility in rice using the original mutant Nongken 58S. Crop Sci 39(6):1711-1715.
    • (1999) Crop Sci , vol.39 , Issue.6 , pp. 1711-1715
    • Mei, M.1    Dai, X.2    Xu, C.3    Zhang, Q.4
  • 16
    • 84863115947 scopus 로고    scopus 로고
    • A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice
    • Ding J, et al. (2012) A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice. Proc Natl Acad Sci USA 109(7):2654-2659.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.7 , pp. 2654-2659
    • Ding, J.1
  • 17
    • 84870575059 scopus 로고    scopus 로고
    • RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice
    • Ding J, et al. (2012) RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice. Mol Plant 5(6):1210-1216.
    • (2012) Mol Plant , vol.5 , Issue.6 , pp. 1210-1216
    • Ding, J.1
  • 18
    • 0034784836 scopus 로고    scopus 로고
    • Identification of an 85-kb DNA fragment containing pms1, a locus for photoperiod-sensitive genic male sterility in rice
    • Liu N, et al. (2001) Identification of an 85-kb DNA fragment containing pms1, a locus for photoperiod-sensitive genic male sterility in rice. Mol Genet Genomics 266(2):271-275.
    • (2001) Mol Genet Genomics , vol.266 , Issue.2 , pp. 271-275
    • Liu, N.1
  • 19
    • 34247334932 scopus 로고    scopus 로고
    • Rapid genome evolution in Pms1 region of rice revealed by comparative sequence analysis
    • Yu J, et al. (2007) Rapid genome evolution in Pms1 region of rice revealed by comparative sequence analysis. Chin Sci Bull 52(7):912-921.
    • (2007) Chin Sci Bull , vol.52 , Issue.7 , pp. 912-921
    • Yu, J.1
  • 20
    • 0001700891 scopus 로고    scopus 로고
    • Pms1 genomic region does not cause fertility difference between the photoperiod-sensitive male sterile rice Nongken 58S and normal Nongken 58
    • Wang F, Mei M, Xu C, Zhang Q (1997) pms1 genomic region does not cause fertility difference between the photoperiod-sensitive male sterile rice Nongken 58S and normal Nongken 58. Acta Bot Sin 39(10):922-925.
    • (1997) Acta Bot Sin , vol.39 , Issue.10 , pp. 922-925
    • Wang, F.1    Mei, M.2    Xu, C.3    Zhang, Q.4
  • 21
    • 84869881863 scopus 로고    scopus 로고
    • Transposable elements reveal a stem cell-specific class of long noncoding RNAs
    • Kelley D, Rinn J (2012) Transposable elements reveal a stem cell-specific class of long noncoding RNAs. Genome Biol 13(11):R107.
    • (2012) Genome Biol , vol.13 , Issue.11 , pp. R107
    • Kelley, D.1    Rinn, J.2
  • 22
    • 0013375114 scopus 로고
    • Studies on the critical stage of fertility change induced by light and its phase development in HPGMR
    • Yuan S, Zhang Z, Xu C (1988) Studies on the critical stage of fertility change induced by light and its phase development in HPGMR. Acta Agron Sin 14(1):7-13.
    • (1988) Acta Agron Sin , vol.14 , Issue.1 , pp. 7-13
    • Yuan, S.1    Zhang, Z.2    Xu, C.3
  • 23
    • 84856288115 scopus 로고    scopus 로고
    • Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
    • Song X, et al. (2012) Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. Plant J 69(3):462-474.
    • (2012) Plant J , vol.69 , Issue.3 , pp. 462-474
    • Song, X.1
  • 24
    • 0037144457 scopus 로고    scopus 로고
    • Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
    • Llave C, Xie Z, Kasschau KD, Carrington JC (2002) Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297(5589):2053-2056.
    • (2002) Science , vol.297 , Issue.5589 , pp. 2053-2056
    • Llave, C.1    Xie, Z.2    Kasschau, K.D.3    Carrington, J.C.4
  • 25
    • 84864441023 scopus 로고    scopus 로고
    • Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development
    • Song X, et al. (2012) Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development. Plant J 71(3):378-389.
    • (2012) Plant J , vol.71 , Issue.3 , pp. 378-389
    • Song, X.1
  • 26
    • 77956989755 scopus 로고    scopus 로고
    • 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants
    • Chen HM, et al. (2010) 22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci USA 107(34):15269-15274.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.34 , pp. 15269-15274
    • Chen, H.M.1
  • 27
    • 84860126087 scopus 로고    scopus 로고
    • A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs
    • Shivaprasad PV, et al. (2012) A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell 24(3):859-874.
    • (2012) Plant Cell , vol.24 , Issue.3 , pp. 859-874
    • Shivaprasad, P.V.1
  • 28
    • 84855910121 scopus 로고    scopus 로고
    • RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA
    • Rajeswaran R, Pooggin MM (2012) RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA. Nucleic Acids Res 40(2):594-599.
    • (2012) Nucleic Acids Res , vol.40 , Issue.2 , pp. 594-599
    • Rajeswaran, R.1    Pooggin, M.M.2
  • 29
    • 23044513238 scopus 로고    scopus 로고
    • Pms3 is the locus causing the original photoperiod-sensitive male sterility mutation of 'Nongken 58S'
    • Mei M, et al. (1999) pms3 is the locus causing the original photoperiod-sensitive male sterility mutation of 'Nongken 58S'. Sci China C Life Sci 42(3):316-322.
    • (1999) Sci China C Life Sci , vol.42 , Issue.3 , pp. 316-322
    • Mei, M.1
  • 30
    • 35348889711 scopus 로고    scopus 로고
    • A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice
    • Nonomura K, et al. (2007) A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice. Plant Cell 19(8):2583-2594.
    • (2007) Plant Cell , vol.19 , Issue.8 , pp. 2583-2594
    • Nonomura, K.1
  • 31
    • 35748967300 scopus 로고    scopus 로고
    • Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development
    • Liu B, et al. (2007) Oryza sativa dicer-like4 reveals a key role for small interfering RNA silencing in plant development. Plant Cell 19(9):2705-2718.
    • (2007) Plant Cell , vol.19 , Issue.9 , pp. 2705-2718
    • Liu, B.1
  • 32
    • 34250717043 scopus 로고    scopus 로고
    • Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting
    • Howell MD, et al. (2007) Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. Plant Cell 19(3):926-942.
    • (2007) Plant Cell , vol.19 , Issue.3 , pp. 926-942
    • Howell, M.D.1
  • 33
    • 34548059198 scopus 로고    scopus 로고
    • A miR-24 microRNA binding-site polymorphism in dihydrofolate reductase gene leads to methotrexate resistance
    • Mishra PJ, et al. (2007) A miR-24 microRNA binding-site polymorphism in dihydrofolate reductase gene leads to methotrexate resistance. Proc Natl Acad Sci USA 104(33):13513-13518.
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.33 , pp. 13513-13518
    • Mishra, P.J.1
  • 34
    • 80053436022 scopus 로고    scopus 로고
    • Germline genetic variants disturbing the Let-7/LIN28 doublenegative feedback loop alter breast cancer susceptibility
    • Chen AX, et al. (2011) Germline genetic variants disturbing the Let-7/LIN28 doublenegative feedback loop alter breast cancer susceptibility. PLoS Genet 7(9):e1002259.
    • (2011) PLoS Genet , vol.7 , Issue.9 , pp. e1002259
    • Chen, A.X.1
  • 35
    • 84897451407 scopus 로고    scopus 로고
    • Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis
    • Li J, Reichel M, Millar AA (2014) Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis. PLoS Genet 10(3):e1004232.
    • (2014) PLoS Genet , vol.10 , Issue.3 , pp. e1004232
    • Li, J.1    Reichel, M.2    Millar, A.A.3
  • 36
    • 84862777808 scopus 로고    scopus 로고
    • Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA
    • Zhou H, et al. (2012) Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA. Cell Res 22(4):649-660.
    • (2012) Cell Res , vol.22 , Issue.4 , pp. 649-660
    • Zhou, H.1
  • 37
    • 84899474289 scopus 로고    scopus 로고
    • Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing
    • Zhai J, Arikit S, Simon SA, Kingham BF, Meyers BC (2014) Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing. Methods 67(1):84-90.
    • (2014) Methods , vol.67 , Issue.1 , pp. 84-90
    • Zhai, J.1    Arikit, S.2    Simon, S.A.3    Kingham, B.F.4    Meyers, B.C.5
  • 38
    • 84919754551 scopus 로고    scopus 로고
    • A non-radioactive method for small RNA detection by northern blotting
    • Huang Q, Mao Z, Li S, Hu J, Zhu Y (2014) A non-radioactive method for small RNA detection by northern blotting. Rice (N Y) 7(1):26.
    • (2014) Rice (N Y) , vol.7 , Issue.1 , pp. 26
    • Huang, Q.1    Mao, Z.2    Li, S.3    Hu, J.4    Zhu, Y.5
  • 39
    • 0001483073 scopus 로고    scopus 로고
    • BAC library constructed to the rice cultivar "Minghui 63" for cloning gene of agronomic importance
    • Peng K, Zhang H, Zhang Q (1998) BAC library constructed to the rice cultivar "Minghui 63" for cloning gene of agronomic importance. Acta Bot Sin 40(12):1108-1114.
    • (1998) Acta Bot Sin , vol.40 , Issue.12 , pp. 1108-1114
    • Peng, K.1    Zhang, H.2    Zhang, Q.3
  • 40
    • 34548040665 scopus 로고    scopus 로고
    • Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens
    • Yuan B, Shen X, Li X, Xu C, Wang S (2007) Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens. Planta 226(4):953-960.
    • (2007) Planta , vol.226 , Issue.4 , pp. 953-960
    • Yuan, B.1    Shen, X.2    Li, X.3    Xu, C.4    Wang, S.5
  • 41
    • 67349135788 scopus 로고    scopus 로고
    • Over-expression of aspartate aminotransferase genes in rice resulted in altered nitrogen metabolism and increased amino acid content in seeds
    • Zhou Y, et al. (2009) Over-expression of aspartate aminotransferase genes in rice resulted in altered nitrogen metabolism and increased amino acid content in seeds. Theor Appl Genet 118(7):1381-1390.
    • (2009) Theor Appl Genet , vol.118 , Issue.7 , pp. 1381-1390
    • Zhou, Y.1
  • 42
    • 34247353776 scopus 로고    scopus 로고
    • OsWRKY13 mediates rice disease resistance by regulating defenserelated genes in salicylate- and jasmonate-dependent signaling
    • Qiu D, et al. (2007) OsWRKY13 mediates rice disease resistance by regulating defenserelated genes in salicylate- and jasmonate-dependent signaling. Mol Plant Microbe Interact 20(5):492-499.
    • (2007) Mol Plant Microbe Interact , vol.20 , Issue.5 , pp. 492-499
    • Qiu, D.1
  • 43
    • 12844274605 scopus 로고    scopus 로고
    • Optimising the tissue culture conditions for high efficiency transformation of indica rice
    • Lin YJ, Zhang Q (2005) Optimising the tissue culture conditions for high efficiency transformation of indica rice. Plant Cell Rep 23(8):540-547.
    • (2005) Plant Cell Rep , vol.23 , Issue.8 , pp. 540-547
    • Lin, Y.J.1    Zhang, Q.2
  • 44
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29(9):e45.
    • (2001) Nucleic Acids Res , vol.29 , Issue.9 , pp. e45
    • Pfaffl, M.W.1


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