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Volumn 52, Issue 7, 2007, Pages 912-921

Rapid genome evolution in Pms1 region of rice revealed by comparative sequence analysis

Author keywords

Dating experiment; Genome organization; Photoperiod sensitive genic male sterile; Retrotransposon; Selection

Indexed keywords


EID: 34247334932     PISSN: 10016538     EISSN: 18619541     Source Type: Journal    
DOI: 10.1007/s11434-007-0150-z     Document Type: Article
Times cited : (2)

References (26)
  • 1
    • 0001866438 scopus 로고
    • The discovery and preliminary studies of the photoperiod-sensitive recessive male sterile rice (Oryza sativa L. ssp. japonica)
    • in Chinese
    • Shi M. The discovery and preliminary studies of the photoperiod-sensitive recessive male sterile rice (Oryza sativa L. ssp. japonica). Sci Agric Sin (in Chinese), 1985, 2: 44-48
    • (1985) Sci Agric Sin , vol.2 , pp. 44-48
    • Shi, M.1
  • 2
    • 0003225428 scopus 로고
    • The influence of photoperiod on pollen fertility change of Hubei photoperiod-sensitive genic male sterile rice
    • Zhang Z G. The influence of photoperiod on pollen fertility change of Hubei photoperiod-sensitive genic male sterile rice. Chin J Rice Sci (in Chinese), 1987, 1: 137-143
    • (1987) Chin J Rice Sci (in Chinese) , vol.1 , pp. 137-143
    • Zhang, Z.G.1
  • 3
    • 0028059292 scopus 로고
    • Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male ste-rility in rice
    • Zhang Q, Shen B Z, Dai X K, et al. Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male ste-rility in rice. Proc Natl Acad Sci USA, 1994, 91: 8675-8679
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 8675-8679
    • Zhang, Q.1    Shen, B.Z.2    Dai, X.K.3
  • 4
    • 0033370181 scopus 로고    scopus 로고
    • Mapping and genetic analysis of the genes for photoperiod-sensitive genic sterility in rice using the original mutant Nongken 58S
    • Mei M H, Dai X K, Xu C G, et al. Mapping and genetic analysis of the genes for photoperiod-sensitive genic sterility in rice using the original mutant Nongken 58S. Crop Sci, 1999, 39: 1711-1715
    • (1999) Crop Sci , vol.39 , pp. 1711-1715
    • Mei, M.H.1    Dai, X.K.2    Xu, C.G.3
  • 5
    • 23044513238 scopus 로고    scopus 로고
    • Pms3 is the locus causing the original photoperiod-sensitive genic male sterility mutation of Nongken 58S
    • Mei M H, Chen L, Zhang Z H, et al. Pms3 is the locus causing the original photoperiod-sensitive genic male sterility mutation of Nongken 58S. Sci China Ser C-Life Sci, 1999, 42(3): 316-322
    • (1999) Sci China Ser C-Life Sci , vol.42 , Issue.3 , pp. 316-322
    • Mei, M.H.1    Chen, L.2    Zhang, Z.H.3
  • 6
    • 0001700891 scopus 로고    scopus 로고
    • Pms1 genomic region does not cause fertility difference between the photoperiod-sensitive male sterile rice Nongken 58S and normal Nongken 58
    • Wang F P, Mei M H, Xu C G, et al. Pms1 genomic region does not cause fertility difference between the photoperiod-sensitive male sterile rice Nongken 58S and normal Nongken 58. Acta Bot Sin, 1997, 39: 922-925
    • (1997) Acta Bot Sin , vol.39 , pp. 922-925
    • Wang, F.P.1    Mei, M.H.2    Xu, C.G.3
  • 7
    • 0034784836 scopus 로고    scopus 로고
    • Identification of an 85-kb DNA fragment containing pms1, a locus for photoperiod-sensitive genic male sterility in rice
    • Liu N, Shan Y, Wang F P, et al. Identification of an 85-kb DNA fragment containing pms1, a locus for photoperiod-sensitive genic male sterility in rice. Mol Genet Genomics, 2001, 266: 271-275
    • (2001) Mol Genet Genomics , vol.266 , pp. 271-275
    • Liu, N.1    Shan, Y.2    Wang, F.P.3
  • 8
    • 23044456199 scopus 로고    scopus 로고
    • Localization of pms3, a gene for photo-period-sensitive genic male sterility, to a 28.4-kb DNA fragment
    • Lu Q, Li X H, Guo D, et al. Localization of pms3, a gene for photo-period-sensitive genic male sterility, to a 28.4-kb DNA fragment. Mol Genet Genomics, 2005, 273: 507-511
    • (2005) Mol Genet Genomics , vol.273 , pp. 507-511
    • Lu, Q.1    Li, X.H.2    Guo, D.3
  • 9
    • 0001483073 scopus 로고    scopus 로고
    • Peng K M, Zhang H B, Zhang Q. A BAC library constructed to the rice cultivar 'Minghui 63' for cloning genes of agronomic importance. Acta Bot Sin, 1998, 40: 1108-1114
    • Peng K M, Zhang H B, Zhang Q. A BAC library constructed to the rice cultivar 'Minghui 63' for cloning genes of agronomic importance. Acta Bot Sin, 1998, 40: 1108-1114
  • 10
    • 0031239012 scopus 로고    scopus 로고
    • Physical mapping of the rice genome with BACs
    • Zhang H B, Wing RA. Physical mapping of the rice genome with BACs. Plant Mol Biol, 1997, 35: 115-127
    • (1997) Plant Mol Biol , vol.35 , pp. 115-127
    • Zhang, H.B.1    Wing, R.A.2
  • 11
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul S F, Madden T L, Schaffer A A, et al. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res, 1997, 25: 3389-3402
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 12
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol, 1997, 268: 78-94
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 13
    • 29444438757 scopus 로고    scopus 로고
    • Genome-wide transcription analyses in rice using tiling microarrays
    • Li L, Wang X, Stolc V, et al. Genome-wide transcription analyses in rice using tiling microarrays. Nat Genet, 2006, 38: 124-129
    • (2006) Nat Genet , vol.38 , pp. 124-129
    • Li, L.1    Wang, X.2    Stolc, V.3
  • 14
    • 0037624063 scopus 로고    scopus 로고
    • Collection, mapping, and anno-tation of over 28,000 cDNA clones from japonica rice
    • Kikuchi S, Satoh K, Nagata T, et al. Collection, mapping, and anno-tation of over 28,000 cDNA clones from japonica rice. Science, 2003, 301: 376-379
    • (2003) Science , vol.301 , pp. 376-379
    • Kikuchi, S.1    Satoh, K.2    Nagata, T.3
  • 15
    • 0346494835 scopus 로고    scopus 로고
    • The TIGR Plant Repeat Databases: A collective resource for the identification of repetitive sequences in plants
    • Ouyang S, Buell C R. The TIGR Plant Repeat Databases: A collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res, 2004, 32: D360-363
    • (2004) Nucleic Acids Res , vol.32
    • Ouyang, S.1    Buell, C.R.2
  • 16
    • 0031707062 scopus 로고    scopus 로고
    • The paleontology of intergene retrotransposons of maize
    • SanMiguel P, Tikhonov A, Nakajima Y, et al. The paleontology of intergene retrotransposons of maize. Nature Genetics, 1998, 20: 43-45
    • (1998) Nature Genetics , vol.20 , pp. 43-45
    • SanMiguel, P.1    Tikhonov, A.2    Nakajima, Y.3
  • 17
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol, 1980, 16: 111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 18
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • Kumar S, Tamura K, Nei M. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform, 2004, 5(2): 150-163
    • (2004) Brief Bioinform , vol.5 , Issue.2 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 19
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nu-clear genomes
    • Ma J, Bennetzen J L. Rapid recent growth and divergence of rice nu-clear genomes. Proc Natl Acad Sci USA, 2004, 101: 12404-12410
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 20
    • 84907150192 scopus 로고    scopus 로고
    • The map-based se-quence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project. The map-based se-quence of the rice genome. Nature, 2005, 436: 793-800
    • (2005) Nature , vol.436 , pp. 793-800
  • 21
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
    • Yu J, Hu S, Wang J, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science, 2002, 296: 79-92
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3
  • 22
    • 0036061848 scopus 로고    scopus 로고
    • Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
    • Devos K M, Brown J K, Bennetzen J L. Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res, 2002, 12: 1075-1079
    • (2002) Genome Res , vol.12 , pp. 1075-1079
    • Devos, K.M.1    Brown, J.K.2    Bennetzen, J.L.3
  • 23
    • 2342466982 scopus 로고    scopus 로고
    • Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
    • Ma J, Devos K M, Bennetzen J L. Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res, 2004, 14: 860-869
    • (2004) Genome Res , vol.14 , pp. 860-869
    • Ma, J.1    Devos, K.M.2    Bennetzen, J.L.3
  • 24
    • 0037394626 scopus 로고    scopus 로고
    • Genome-wide intraspecific DNA-sequence variations in rice
    • Han B, Xue Y. Genome-wide intraspecific DNA-sequence variations in rice. Curr Opin Plant Biol, 2003, 6: 134-138
    • (2003) Curr Opin Plant Biol , vol.6 , pp. 134-138
    • Han, B.1    Xue, Y.2
  • 25
    • 20144366003 scopus 로고    scopus 로고
    • The Genomes of Oryza sativa: A history of duplications
    • Yu J, Wang J, Lin W, et al. The Genomes of Oryza sativa: A history of duplications. PLoS Biol, 2005, 3: e38
    • (2005) PLoS Biol , vol.3
    • Yu, J.1    Wang, J.2    Lin, W.3
  • 26
    • 20444502606 scopus 로고    scopus 로고
    • Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63
    • Zhang J, Feng Q, Jin C, et al. Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. Plant J, 2005, 42: 772-780
    • (2005) Plant J , vol.42 , pp. 772-780
    • Zhang, J.1    Feng, Q.2    Jin, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.