-
1
-
-
84921345093
-
Antibodies to watch in 2015
-
Reichert,J.M. (2015) Antibodies to watch in 2015. MAbs, 7, 1-8.
-
(2015)
MAbs
, vol.7
, pp. 1-8
-
-
Reichert, J.M.1
-
2
-
-
0016756272
-
Continuous cultures of fused cells secreting antibody of predefined specificity
-
Kohler,G. and Milstein,C. (1975) Continuous cultures of fused cells secreting antibody of predefined specificity. Nature, 256, 495-497.
-
(1975)
Nature
, vol.256
, pp. 495-497
-
-
Kohler, G.1
Milstein, C.2
-
3
-
-
0021818675
-
Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface
-
Smith,G.P. (1985) Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science (New York, N.Y.), 228, 1315-1317.
-
(1985)
Science (New York, N.Y.)
, vol.228
, pp. 1315-1317
-
-
Smith, G.P.1
-
4
-
-
77957361348
-
Development trends for human monoclonal antibody therapeutics
-
Nelson,A.L., Dhimolea,E. and Reichert,J.M. (2010) Development trends for human monoclonal antibody therapeutics. Nat. Rev. Drug Discov., 9, 767-774.
-
(2010)
Nat. Rev. Drug Discov
, vol.9
, pp. 767-774
-
-
Nelson, A.L.1
Dhimolea, E.2
Reichert, J.M.3
-
5
-
-
84929179769
-
Developability assessment during the selection of novel therapeutic antibodies
-
Jarasch,A., Koll,H., Regula,J.T., Bader,M., Papadimitriou,A. and Kettenberger,H. (2015) Developability assessment during the selection of novel therapeutic antibodies. J. Pharm. Sci., 104, 1885-1898.
-
(2015)
J. Pharm. Sci
, vol.104
, pp. 1885-1898
-
-
Jarasch, A.1
Koll, H.2
Regula, J.T.3
Bader, M.4
Papadimitriou, A.5
Kettenberger, H.6
-
6
-
-
85127167136
-
Antibody informatics for drug discovery
-
Shirai,H., Prades,C., Vita,R., Marcatili,P., Popovic,B., Xu,J., Overington,J.P., Hirayama,K., Soga,S., Tsunoyama,K. et al. (2014) Antibody informatics for drug discovery. Biochim. Biophys. Acta, 14, S1570-S9639.
-
(2014)
Biochim. Biophys. Acta
, vol.14
, pp. S1570-S9639
-
-
Shirai, H.1
Prades, C.2
Vita, R.3
Marcatili, P.4
Popovic, B.5
Xu, J.6
Overington, J.P.7
Hirayama, K.8
Soga, S.9
Tsunoyama, K.10
-
7
-
-
84867015346
-
Computer-aided antibody design
-
Kuroda,D., Shirai,H., Jacobson,M.P. and Nakamura,H. (2012) Computer-aided antibody design. Protein Eng. Des. Sel., 25, 507-521.
-
(2012)
Protein Eng. Des. Sel
, vol.25
, pp. 507-521
-
-
Kuroda, D.1
Shirai, H.2
Jacobson, M.P.3
Nakamura, H.4
-
8
-
-
48049124972
-
Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains
-
Abhinandan,K.R. and Martin,A.C. (2008) Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains. Mol. Immunol., 45, 3832-3839.
-
(2008)
Mol. Immunol
, vol.45
, pp. 3832-3839
-
-
Abhinandan, K.R.1
Martin, A.C.2
-
9
-
-
84867370412
-
IMGT/DomainGapAlign: the IMGT(R) tool for the analysis of IG, TR, MH, IgSF, and MhSF domain amino acid polymorphism
-
Ehrenmann,F. and Lefranc,M.P. (2012) IMGT/DomainGapAlign: the IMGT(R) tool for the analysis of IG, TR, MH, IgSF, and MhSF domain amino acid polymorphism. Methods Mol. Biol., 882, 605-633.
-
(2012)
Methods Mol. Biol
, vol.882
, pp. 605-633
-
-
Ehrenmann, F.1
Lefranc, M.P.2
-
10
-
-
84946071579
-
PyIgClassify: a database of antibody CDR structural classifications
-
Adolf-Bryfogle,J., Xu,Q., North,B., Lehmann,A. and Dunbrack,R.L. Jr (2015) PyIgClassify: a database of antibody CDR structural classifications. Nucleic Acids Res., 43, D432-D438.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D432-D438
-
-
Adolf-Bryfogle, J.1
Xu, Q.2
North, B.3
Lehmann, A.4
Dunbrack, R.L.5
-
11
-
-
80054001999
-
Antibody modeling assessment
-
Almagro,J.C., Beavers,M.P., Hernandez-Guzman,F., Maier,J., Shaulsky,J., Butenhof,K., Labute,P., Thorsteinson,N., Kelly,K., Teplyakov,A. et al. (2011) Antibody modeling assessment. Proteins, 79, 3050-3066.
-
(2011)
Proteins
, vol.79
, pp. 3050-3066
-
-
Almagro, J.C.1
Beavers, M.P.2
Hernandez-Guzman, F.3
Maier, J.4
Shaulsky, J.5
Butenhof, K.6
Labute, P.7
Thorsteinson, N.8
Kelly, K.9
Teplyakov, A.10
-
12
-
-
84904420055
-
Second antibody modeling assessment (AMA-II)
-
Almagro,J.C., Teplyakov,A., Luo,J., Sweet,R.W., Kodangattil,S., Hernandez-Guzman,F. and Gilliland,G.L. (2014) Second antibody modeling assessment (AMA-II). Proteins, 82, 1553-1562.
-
(2014)
Proteins
, vol.82
, pp. 1553-1562
-
-
Almagro, J.C.1
Teplyakov, A.2
Luo, J.3
Sweet, R.W.4
Kodangattil, S.5
Hernandez-Guzman, F.6
Gilliland, G.L.7
-
13
-
-
84864465479
-
Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure
-
Kunik,V., Ashkenazi,S. and Ofran,Y. (2012) Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure. Nucleic Acids Res., 40, W521-W524.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W521-W524
-
-
Kunik, V.1
Ashkenazi, S.2
Ofran, Y.3
-
14
-
-
84884998464
-
Antibody i-Patch prediction of the antibody binding site improves rigid local antibody-antigen docking
-
Krawczyk,K., Baker,T., Shi,J. and Deane,C.M. (2013) Antibody i-Patch prediction of the antibody binding site improves rigid local antibody-antigen docking. Protein Eng. Des. Sel., 26, 621-629.
-
(2013)
Protein Eng. Des. Sel
, vol.26
, pp. 621-629
-
-
Krawczyk, K.1
Baker, T.2
Shi, J.3
Deane, C.M.4
-
15
-
-
84906235282
-
Improving B-cell epitope prediction and its application to global antibody-antigen docking
-
Krawczyk,K., Liu,X., Baker,T., Shi,J. and Deane,C.M. (2014) Improving B-cell epitope prediction and its application to global antibody-antigen docking. Bioinformatics (Oxford, England), 30, 2288-2294.
-
(2014)
Bioinformatics (Oxford, England)
, vol.30
, pp. 2288-2294
-
-
Krawczyk, K.1
Liu, X.2
Baker, T.3
Shi, J.4
Deane, C.M.5
-
16
-
-
84872049601
-
Reliable B cell epitope predictions: impacts of method development and improved benchmarking
-
Kringelum,J.V., Lundegaard,C., Lund,O. and Nielsen,M. (2012) Reliable B cell epitope predictions: impacts of method development and improved benchmarking. PLoS Comput. Biol., 8, e1002829.
-
(2012)
PLoS Comput. Biol
, vol.8
, pp. e1002829
-
-
Kringelum, J.V.1
Lundegaard, C.2
Lund, O.3
Nielsen, M.4
-
17
-
-
79251638148
-
Computational docking of antibody-antigen complexes, opportunities and pitfalls illustrated by influenza hemagglutinin
-
Pedotti,M., Simonelli,L., Livoti,E. and Varani,L. (2011) Computational docking of antibody-antigen complexes, opportunities and pitfalls illustrated by influenza hemagglutinin. Int. J. Mol. Sci., 12, 226-251.
-
(2011)
Int. J. Mol. Sci
, vol.12
, pp. 226-251
-
-
Pedotti, M.1
Simonelli, L.2
Livoti, E.3
Varani, L.4
-
18
-
-
84959903029
-
ANARCI: antigen receptor numbering and receptor classification
-
Dunbar,J. and Deane,C.M. (2016) ANARCI: antigen receptor numbering and receptor classification. Bioinformatics (Oxford, England), 32, 298-300.
-
(2016)
Bioinformatics (Oxford, England)
, vol.32
, pp. 298-300
-
-
Dunbar, J.1
Deane, C.M.2
-
19
-
-
0004032583
-
-
DIANE Publishing, Darby
-
Kabat,E.A., Te Wu,T., Perry,H.M., Gottesman,K.S. and Foeller,C. (1992) Sequences of proteins of immunological interest. DIANE Publishing, Darby.
-
(1992)
Sequences of proteins of immunological interest
-
-
Kabat, E.A.1
Te Wu, T.2
Perry, H.M.3
Gottesman, K.S.4
Foeller, C.5
-
20
-
-
0031558798
-
Standard conformations for the canonical structures of immunoglobulins
-
Al-Lazikani,B., Lesk,A.M. and Chothia,C. (1997) Standard conformations for the canonical structures of immunoglobulins. J. Mol. Biol., 273, 927-948.
-
(1997)
J. Mol. Biol
, vol.273
, pp. 927-948
-
-
Al-Lazikani, B.1
Lesk, A.M.2
Chothia, C.3
-
21
-
-
0037212339
-
IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains
-
Lefranc,M.-P., Pommié,C., Ruiz,M., Giudicelli,V., Foulquier,E., Truong,L., Thouvenin-Contet,V. and Lefranc,G. (2003) IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev. Comp. Immunol., 27, 55-77.
-
(2003)
Dev. Comp. Immunol
, vol.27
, pp. 55-77
-
-
Lefranc, M.-P.1
Pommié, C.2
Ruiz, M.3
Giudicelli, V.4
Foulquier, E.5
Truong, L.6
Thouvenin-Contet, V.7
Lefranc, G.8
-
22
-
-
0035827172
-
Yet another numbering scheme for immunoglobulin variable domains: an automatic modeling and analysis tool
-
Honegger,A. and Pluckthun,A. (2001) Yet another numbering scheme for immunoglobulin variable domains: an automatic modeling and analysis tool. J. Mol. Biol., 309, 657-670.
-
(2001)
J. Mol. Biol
, vol.309
, pp. 657-670
-
-
Honegger, A.1
Pluckthun, A.2
-
23
-
-
84891771647
-
SAbDab: the structural antibody database
-
Dunbar,J., Krawczyk,K., Leem,J., Baker,T., Fuchs,A., Georges,G., Shi,J. and Deane,C.M. (2014) SAbDab: the structural antibody database. Nucleic Acids Res., 42, D1140-D1146.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D1140-D1146
-
-
Dunbar, J.1
Krawczyk, K.2
Leem, J.3
Baker, T.4
Fuchs, A.5
Georges, G.6
Shi, J.7
Deane, C.M.8
-
24
-
-
84885010253
-
ABangle: characterising the VH-VL orientation in antibodies
-
Dunbar,J., Fuchs,A., Shi,J. and Deane,C.M. (2013) ABangle: characterising the VH-VL orientation in antibodies. Protein Eng. Des. Sel., 26, 611-620.
-
(2013)
Protein Eng. Des. Sel
, vol.26
, pp. 611-620
-
-
Dunbar, J.1
Fuchs, A.2
Shi, J.3
Deane, C.M.4
-
25
-
-
80755125384
-
Predicting antibody complementarity determining region structures without classification
-
Choi,Y. and Deane,C.M. (2011) Predicting antibody complementarity determining region structures without classification. Mol. Biosyst., 7, 3327-3334.
-
(2011)
Mol. Biosyst
, vol.7
, pp. 3327-3334
-
-
Choi, Y.1
Deane, C.M.2
-
26
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali,A. and Blundell,T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
-
(1993)
J. Mol. Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
27
-
-
70450106216
-
Improved prediction of protein side-chain conformations with SCWRL4
-
Krivov,G.G., Shapovalov,M.V. and Dunbrack,R.L. Jr (2009) Improved prediction of protein side-chain conformations with SCWRL4. Proteins, 77, 778-795.
-
(2009)
Proteins
, vol.77
, pp. 778-795
-
-
Krivov, G.G.1
Shapovalov, M.V.2
Dunbrack, R.L.3
-
28
-
-
84904468725
-
Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization
-
Weitzner,B.D., Kuroda,D., Marze,N., Xu,J. and Gray,J.J. (2014) Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization. Proteins, 82, 1611-1623.
-
(2014)
Proteins
, vol.82
, pp. 1611-1623
-
-
Weitzner, B.D.1
Kuroda, D.2
Marze, N.3
Xu, J.4
Gray, J.J.5
-
29
-
-
84911398863
-
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies
-
Yamashita,K., Ikeda,K., Amada,K., Liang,S., Tsuchiya,Y., Nakamura,H., Shirai,H. and Standley,D.M. (2014) Kotai Antibody Builder: automated high-resolution structural modeling of antibodies. Bioinformatics (Oxford, England), 30, 3279-3280.
-
(2014)
Bioinformatics (Oxford, England)
, vol.30
, pp. 3279-3280
-
-
Yamashita, K.1
Ikeda, K.2
Amada, K.3
Liang, S.4
Tsuchiya, Y.5
Nakamura, H.6
Shirai, H.7
Standley, D.M.8
-
30
-
-
50549090182
-
PIGS: automatic prediction of antibody structures
-
Marcatili,P., Rosi,A. and Tramontano,A. (2008) PIGS: automatic prediction of antibody structures. Bioinformatics (Oxford, England), 24, 1953-1954.
-
(2008)
Bioinformatics (Oxford, England)
, vol.24
, pp. 1953-1954
-
-
Marcatili, P.1
Rosi, A.2
Tramontano, A.3
-
31
-
-
84923373886
-
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
-
Martin,A.C. (2014) Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV). F1000Research, 3, 249.
-
(2014)
F1000Research
, vol.3
, pp. 249
-
-
Martin, A.C.1
|