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F1000Research
Volumn 3, Issue , 2014, Pages
Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
Author keywords

[No Author keywords available]
Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; BIOINFORMATICS; COMPUTER PROGRAM; CONSENSUS; DATA PROCESSING; EQUIPMENT DESIGN; ONLINE SYSTEM; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;
EID: 84923373886     PISSN: 20461402     EISSN: 1759796X     Source Type: Journal    
DOI: 10.12688/f1000research.5486.1     Document Type: Article
Times cited : (13)
References (22)
  • 1
    • 0023306399 scopus 로고
    • HOMED: a homologous sequence editor
    • 3453212
    • Stockwell PA Petersen GB: HOMED: a homologous sequence editor. Comput Appl Biosci. 1987;3(1):37-43. 3453212 10.1093/bioinformatics/3.1.37
    • (1987) Comput Appl Biosci , vol.3 , Issue.1 , pp. 37-43
    • Stockwell, P.A.1    Petersen, G.B.2
  • 2
    • 0027048269 scopus 로고
    • MALIGNED: a multiple sequence alignment editor
    • 1468008
    • Clark SP: MALIGNED: a multiple sequence alignment editor. Comput Appl Biosci. 1992;8(6):535-538. 1468008 10.1093/bioinformatics/8.6.535
    • (1992) Comput Appl Biosci , vol.8 , Issue.6 , pp. 535-538
    • Clark, S.P.1
  • 3
    • 0003457674 scopus 로고    scopus 로고
    • GeneDoc: Analysis and visualization of genetic variation
    • Jr, 4, Reference Source, EMBNEW NEWS
    • Nicholas KB Nicholas HB Jr: GeneDoc: Analysis and visualization of genetic variation. EMBNEW NEWS.1997; 4:14. Reference Source
    • (1997) , pp. 14
    • Nicholas, K.B.1    Nicholas, H.B.2
  • 4
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
    • 9021275
    • Galtier N Gouy M Gautier C: SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci. 1996;12(6):543-548. 9021275 10.1093/bioinformatics/12.6.543
    • (1996) Comput Appl Biosci , vol.12 , Issue.6 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 5
    • 0027732016 scopus 로고
    • DCSE, an interactive tool for sequence alignment and secondary structure research
    • 7511479
    • De Rijk P De Wachter R: DCSE, an interactive tool for sequence alignment and secondary structure research. Comput Appl Biosci. 1993;9(6):735-740. 7511479 10.1093/bioinformatics/9.6.735
    • (1993) Comput Appl Biosci , vol.9 , Issue.6 , pp. 735-740
    • De Rijk, P.1    De Wachter, R.2
  • 6
    • 0037314114 scopus 로고    scopus 로고
    • RnaViz 2: an improved representation of RNA secondary structure
    • 12538259
    • De Rijk P Wuyts J De Wachter R: RnaViz 2: an improved representation of RNA secondary structure. Bioinformatics. 2003;19(2):299-300. 12538259 10.1093/bioinformatics/19.2.299
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 299-300
    • De Rijk, P.1    Wuyts, J.2    De Wachter, R.3
  • 7
    • 0032500897 scopus 로고    scopus 로고
    • CINEMA--a novel Colour INteractive Editor for Multiple Alignments
    • 9852962
    • Parry-Smith DJ Payne AW Michie AD: CINEMA--a novel Colour INteractive Editor for Multiple Alignments. Gene. 1998;221(1):GC57-GC63. 9852962 10.1016/S0378-1119(97)00650-1
    • (1998) Gene , vol.221 , Issue.1 , pp. GC57-GC63
    • Parry-Smith, D.J.1    Payne, A.W.2    Michie, A.D.3
  • 8
    • 2942525501 scopus 로고    scopus 로고
    • UTOPIA-User-Friendly Tools for Operating Informatics Applications
    • 18629035, 2447318
    • Pettifer SR Sinnott JR Attwood TK: UTOPIA-User-Friendly Tools for Operating Informatics Applications. Comp Funct Genomics. 2004;5(1):56-60. 18629035 10.1002/cfg.359 2447318
    • (2004) Comp Funct Genomics , vol.5 , Issue.1 , pp. 56-60
    • Pettifer, S.R.1    Sinnott, J.R.2    Attwood, T.K.3
  • 9
    • 0034088594 scopus 로고    scopus 로고
    • MPSA: integrated system for multiple protein sequence analysis with client/server capabilities
    • 10869021
    • Blanchet C Combet C Geourjon C: MPSA: integrated system for multiple protein sequence analysis with client/server capabilities. Bioinformatics. 2000;16(3):286-287. 10869021 10.1093/bioinformatics/16.3.286
    • (2000) Bioinformatics , vol.16 , Issue.3 , pp. 286-287
    • Blanchet, C.1    Combet, C.2    Geourjon, C.3
  • 10
    • 0035029214 scopus 로고    scopus 로고
    • ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities
    • 11334635
    • Deléage G Combet C Blanchet C: ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities. Comput Biol Med. 2001;31(4):259-267. 11334635 10.1016/S0010-4825(01)00008-7
    • (2001) Comput Biol Med , vol.31 , Issue.4 , pp. 259-267
    • Deléage, G.1    Combet, C.2    Blanchet, C.3
  • 11
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • 9396791, 147148
    • Thompson JD Gibson TJ Plewniak F: The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997;25(24):4876-4882. 9396791 10.1093/nar/25.24.4876 147148
    • (1997) Nucleic Acids Res , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3
  • 12
    • 0037340652 scopus 로고    scopus 로고
    • Protein family annotation in a multiple alignment viewer
    • 12611813
    • Johnson JM Mason K Moallemi C: Protein family annotation in a multiple alignment viewer. Bioinformatics. 2003;19(4):544-545. 12611813 10.1093/bioinformatics/btg021
    • (2003) Bioinformatics , vol.19 , Issue.4 , pp. 544-545
    • Johnson, J.M.1    Mason, K.2    Moallemi, C.3
  • 13
    • 1342288004 scopus 로고    scopus 로고
    • The Jalview Java alignment editor
    • 14960472
    • Clamp M Cuff J Searle SM: The Jalview Java alignment editor. Bioinformatics. 2004;20(3):426-427. 14960472 10.1093/bioinformatics/btg430
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 426-427
    • Clamp, M.1    Cuff, J.2    Searle, S.M.3
  • 14
    • 84859260956 scopus 로고    scopus 로고
    • Improving your target-template alignment with MODalign
    • 22308148, 3315710
    • Barbato A Benkert P Schwede T: Improving your target-template alignment with MODalign. Bioinformatics. 2012;28(7):1038-1039. 22308148 10.1093/bioinformatics/bts070 3315710
    • (2012) Bioinformatics , vol.28 , Issue.7 , pp. 1038-1039
    • Barbato, A.1    Benkert, P.2    Schwede, T.3
  • 15
    • 84904811373 scopus 로고    scopus 로고
    • Alignment-Annotator web server: rendering and annotating sequence alignments
    • 24813445
    • Gille C Fähling M Weyand B: Alignment-Annotator web server: rendering and annotating sequence alignments. Nucleic Acids Res. 2014;42(Web Server issue):W3-W6. 24813445 10.1093/nar/gku400
    • (2014) Nucleic Acids Res , vol.42 , Issue.WEB SERVER ISSUE , pp. W3-W6
    • Gille, C.1    Fähling, M.2    Weyand, B.3
  • 16
    • 84904526860 scopus 로고    scopus 로고
    • SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences
    • 25056180, 4118779
    • Jaschob D Davis TN Riffle M: SnipViz: a compact and lightweight web site widget for display and dissemination of multiple versions of gene and protein sequences. BMC Res Notes. 2014;7:468. 25056180 10.1186/1756-0500-7-468 4118779
    • (2014) BMC Res Notes , vol.7 , pp. 468
    • Jaschob, D.1    Davis, T.N.2    Riffle, M.3
  • 17
    • 84916606407 scopus 로고    scopus 로고
    • Sequence, a BioJS component for visualising sequences
    • 25075289, 4103491
    • Gomez J Jimenez R: Sequence, a BioJS component for visualising sequences. F1000Res. 2014;3:52. 25075289 10.12688/f1000research.3-52.v1 4103491
    • (2014) F1000Res , vol.3 , pp. 52
    • Gomez, J.1    Jimenez, R.2
  • 18
    • 84916596159 scopus 로고    scopus 로고
    • BioJS: an open source standard for biological visualisation - its status in 2014
    • 25075290, 4103492
    • Corpas M Jimenez R Carbon SJ: BioJS: an open source standard for biological visualisation - its status in 2014. F1000Res. 2014;3:55. 25075290 10.12688/f1000research.3-55.v1 4103492
    • (2014) F1000Res , vol.3 , pp. 55
    • Corpas, M.1    Jimenez, R.2    Carbon, S.J.3
  • 19
    • 84875627549 scopus 로고    scopus 로고
    • MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships
    • 23396123, 3605600
    • Kosinski J Barbato A Tramontano A: MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships. Bioinformatics. 2013;29(7):953-954. 23396123 10.1093/bioinformatics/btt062 3605600
    • (2013) Bioinformatics , vol.29 , Issue.7 , pp. 953-954
    • Kosinski, J.1    Barbato, A.2    Tramontano, A.3
  • 20
    • 84891351693 scopus 로고    scopus 로고
    • Sequence alignment visualization in HTML5 without Java
    • 24273246
    • Gille C Birgit W Gille A: Sequence alignment visualization in HTML5 without Java. Bioinformatics. 2014;30(1):121-122. 24273246 10.1093/bioinformatics/btt614
    • (2014) Bioinformatics , vol.30 , Issue.1 , pp. 121-122
    • Gille, C.1    Birgit, W.2    Gille, A.3
  • 21
    • 84899619513 scopus 로고    scopus 로고
    • Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes
    • 24727730, 3984090
    • Langewisch T Zhang H Vincent R: Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes. PLoS One. 2014;9(4):e94150. 24727730 10.1371/journal.pone.0094150 3984090
    • (2014) PLoS One , vol.9 , Issue.4 , pp. e94150
    • Langewisch, T.1    Zhang, H.2    Vincent, R.3
  • 22
    • 84923360909 scopus 로고    scopus 로고
    • F1000Research/JSAV
    • Data Source
    • Martin ACR: F1000Research/JSAV. Zenodo. 2014. Data Source
    • (2014) Zenodo
    • Martin, A.C.R.1

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.