메뉴 건너뛰기




Volumn 30, Issue 22, 2014, Pages 3279-3280

Kotai Antibody Builder: Automated high-resolution structural modeling of antibodies

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY; COMPLEMENTARITY DETERMINING REGION;

EID: 84911398863     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu510     Document Type: Article
Times cited : (44)

References (13)
  • 1
    • 80054001999 scopus 로고    scopus 로고
    • Antibody modeling assessment
    • Almagro, J.C. et al. (2011) Antibody modeling assessment. Proteins, 79, 3050-3066.
    • (2011) Proteins , vol.79 , pp. 3050-3066
    • Almagro, J.C.1
  • 2
    • 84904420055 scopus 로고    scopus 로고
    • Second antibody modeling assessment (AMA -II)
    • Almagro, J.C. et al. (2014) Second antibody modeling assessment (AMA-II). Proteins, 82, 1553-1562.
    • (2014) Proteins , vol.82 , pp. 1553-1562
    • Almagro, J.C.1
  • 3
    • 74549178560 scopus 로고    scopus 로고
    • MolProbity: All-atom structure validation for macromolecular crystallography
    • Chen, V.B. et al. (2010) MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D Biol. Crystallogr., D66, 12-21.
    • (2010) Acta Crystallogr. D Biol. Crystallogr. , vol.D66 , pp. 12-21
    • Chen, V.B.1
  • 4
    • 0344121638 scopus 로고    scopus 로고
    • The filling potential method: A method for estimating the free energy surface for protein-ligand docking
    • Fukunishi, Y. et al. (2003) The filling potential method: a method for estimating the free energy surface for protein-ligand docking. J. Phys. Chem. B., 107, 13201-13210.
    • (2003) J. Phys. Chem. B. , vol.107 , pp. 13201-13210
    • Fukunishi, Y.1
  • 5
    • 57349097173 scopus 로고    scopus 로고
    • Structual classification of CDR-H3 revisited: A lesson in antibody modeling
    • Kuroda, D. et al. (2008) Structual classification of CDR-H3 revisited: a lesson in antibody modeling. Proteins, 73, 608-620.
    • (2008) Proteins , vol.73 , pp. 608-620
    • Kuroda, D.1
  • 6
    • 84867015346 scopus 로고    scopus 로고
    • Computer-aided antibody design
    • Kuroda, D. et al. (2012) Computer-aided antibody design. Protein Eng. Des. Sel., 25, 507-521.
    • (2012) Protein Eng. Des. Sel. , vol.25 , pp. 507-521
    • Kuroda, D.1
  • 7
    • 80053986637 scopus 로고    scopus 로고
    • Fast and accurate prediction of protein side-chain conformations
    • Liang, S. et al. (2011) Fast and accurate prediction of protein side-chain conformations. Bioinformatics, 27, 2913-2914.
    • (2011) Bioinformatics , vol.27 , pp. 2913-2914
    • Liang, S.1
  • 8
    • 84891886128 scopus 로고    scopus 로고
    • LEAP: Highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chains
    • Liang, S. et al. (2014) LEAP: highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chains. J. Comput. Chem., 35, 335-341.
    • (2014) J. Comput. Chem. , vol.35 , pp. 335-341
    • Liang, S.1
  • 9
    • 84867033435 scopus 로고    scopus 로고
    • Bridging the gap between single-template and fragment based protein structure modeling using Spanner
    • Lis, M. et al. (2011) Bridging the gap between single-template and fragment based protein structure modeling using Spanner. Immunome Res., 7, 1-8.
    • (2011) Immunome Res. , vol.7 , pp. 1-8
    • Lis, M.1
  • 10
    • 50549090182 scopus 로고    scopus 로고
    • PIGS: Automatic prediction of antibody structures
    • Marcatili, P. et al. (2008) PIGS: automatic prediction of antibody structures. Bioinformatics, 24, 1953-1954.
    • (2008) Bioinformatics , vol.24 , pp. 1953-1954
    • Marcatili, P.1
  • 11
    • 79251598995 scopus 로고    scopus 로고
    • A new clustering of antibody CDR loop conformations
    • North, B. et al. (2011) A new clustering of antibody CDR loop conformations. J. Mol. Biol., 406, 228-256.
    • (2011) J. Mol. Biol. , vol.406 , pp. 228-256
    • North, B.1
  • 12
    • 0030577371 scopus 로고    scopus 로고
    • Structural classification of CDR-H3 in antibodies
    • Shirai, H. et al. (1996) Structural classification of CDR-H3 in antibodies. FEBS Lett., 399, 1-8.
    • (1996) FEBS Lett. , vol.399 , pp. 1-8
    • Shirai, H.1
  • 13
    • 84904439050 scopus 로고    scopus 로고
    • High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations
    • Shirai, H. et al. (2014) High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations. Proteins, 82, 1624-1635.
    • (2014) Proteins , vol.82 , pp. 1624-1635
    • Shirai, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.