메뉴 건너뛰기




Volumn 48, Issue , 2017, Pages 83-94

Immunoinformatics analysis and in silico designing of a novel multi-epitope peptide vaccine against Staphylococcus aureus

Author keywords

Alpha enolase; Clumping factor A; Immunoinformatics; Iron surface determinant B; Staphylococcus aureus; Subunit vaccine

Indexed keywords

ALPHA ENOLASE; EPITOPE; PEPTIDE VACCINE; TOLL LIKE RECEPTOR 2; STAPHYLOCOCCUS VACCINE; SUBUNIT VACCINE;

EID: 85006952981     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2016.12.010     Document Type: Article
Times cited : (159)

References (76)
  • 1
    • 84936950290 scopus 로고    scopus 로고
    • The Gromacs Development Team. Gromacs User Manual Version 5
    • Abraham, M., Van Der Spoel, D., Lindahl, E., Hess, B., The Gromacs Development Team. Gromacs User Manual Version 5. 2014.
    • (2014)
    • Abraham, M.1    Van Der Spoel, D.2    Lindahl, E.3    Hess, B.4
  • 4
    • 3843052528 scopus 로고    scopus 로고
    • Prediction of CTL epitopes using QM, SVM and ANN techniques
    • Bhasin, M., Raghava, G., Prediction of CTL epitopes using QM, SVM and ANN techniques. Vaccine 22:23 (2004), 3195–3204.
    • (2004) Vaccine , vol.22 , Issue.23 , pp. 3195-3204
    • Bhasin, M.1    Raghava, G.2
  • 5
    • 79957595749 scopus 로고    scopus 로고
    • Strategies for and advances in the development of Staphylococcus aureus prophylactic vaccines
    • Broughan, J., Anderson, R., Anderson, A.S., Strategies for and advances in the development of Staphylococcus aureus prophylactic vaccines. Expert. Rev. Vaccines 10:5 (2011), 695–708.
    • (2011) Expert. Rev. Vaccines , vol.10 , Issue.5 , pp. 695-708
    • Broughan, J.1    Anderson, R.2    Anderson, A.S.3
  • 8
    • 0032833566 scopus 로고    scopus 로고
    • Costs of treating infections caused by methicillin-resistant staphylococci and vancomycin-resistant enterococci
    • Carbon, C., Costs of treating infections caused by methicillin-resistant staphylococci and vancomycin-resistant enterococci. J. Antimicrob. Chemother. 44:1 (1999), 31–36.
    • (1999) J. Antimicrob. Chemother. , vol.44 , Issue.1 , pp. 31-36
    • Carbon, C.1
  • 10
    • 77955792980 scopus 로고    scopus 로고
    • Consistent refinement of submitted models at CASP using a knowledge-based potential
    • Chopra, G., Kalisman, N., Levitt, M., Consistent refinement of submitted models at CASP using a knowledge-based potential. Proteins: Struct. Funct. Bioinf. 78:12 (2010), 2668–2678.
    • (2010) Proteins: Struct. Funct. Bioinf. , vol.78 , Issue.12 , pp. 2668-2678
    • Chopra, G.1    Kalisman, N.2    Levitt, M.3
  • 11
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: a hub for protein information
    • Consortium, U., UniProt: a hub for protein information. Nucleic Acids Res. 43 (2015), D204–D212.
    • (2015) Nucleic Acids Res. , vol.43 , pp. D204-D212
    • Consortium, U.1
  • 12
    • 84888312300 scopus 로고    scopus 로고
    • Disulfide by design 2.0: a web-based tool for disulfide engineering in proteins
    • Craig, D.B., Dombkowski, A.A., Disulfide by design 2.0: a web-based tool for disulfide engineering in proteins. BMC Bioinf., 14(1), 2013, 346.
    • (2013) BMC Bioinf. , vol.14 , Issue.1 , pp. 346
    • Craig, D.B.1    Dombkowski, A.A.2
  • 13
    • 84889053011 scopus 로고    scopus 로고
    • Designing of interferon-gamma inducing MHC class-II binders
    • Dhanda, S.K., Vir, P., Raghava, G., Designing of interferon-gamma inducing MHC class-II binders. Biol. Direct, 8, 2013, 30.
    • (2013) Biol. Direct , vol.8 , pp. 30
    • Dhanda, S.K.1    Vir, P.2    Raghava, G.3
  • 14
    • 84884187982 scopus 로고    scopus 로고
    • AllerTOP-a server for in silico prediction of allergens
    • Dimitrov, I., Flower, D.R., Doytchinova, I., AllerTOP-a server for in silico prediction of allergens. BMC Bioinf., 14(6), 2013, 1.
    • (2013) BMC Bioinf. , vol.14 , Issue.6 , pp. 1
    • Dimitrov, I.1    Flower, D.R.2    Doytchinova, I.3
  • 16
    • 33847031827 scopus 로고    scopus 로고
    • VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines
    • Doytchinova, I.A., Flower, D.R., VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinf., 8(1), 2007, 4.
    • (2007) BMC Bioinf. , vol.8 , Issue.1 , pp. 4
    • Doytchinova, I.A.1    Flower, D.R.2
  • 18
    • 47649130438 scopus 로고    scopus 로고
    • Predicting linear B-cell epitopes using string kernels
    • EL-Manzalawy, Y., Dobbs, D., Honavar, V., Predicting linear B-cell epitopes using string kernels. J. Mol. Recognit. 21:4 (2008), 243–255.
    • (2008) J. Mol. Recognit. , vol.21 , Issue.4 , pp. 243-255
    • EL-Manzalawy, Y.1    Dobbs, D.2    Honavar, V.3
  • 19
    • 84938417152 scopus 로고    scopus 로고
    • Designing of complex multi-epitope peptide vaccine based on omps of Klebsiella pneumoniae: an in silico approach
    • Farhadi, T., Nezafat, N., Ghasemi, Y., Karimi, Z., Hemmati, S., Erfani, N., Designing of complex multi-epitope peptide vaccine based on omps of Klebsiella pneumoniae: an in silico approach. Int. J. Pept. Res. Ther. 21 (2015), 325–341.
    • (2015) Int. J. Pept. Res. Ther. , vol.21 , pp. 325-341
    • Farhadi, T.1    Nezafat, N.2    Ghasemi, Y.3    Karimi, Z.4    Hemmati, S.5    Erfani, N.6
  • 20
    • 70449723681 scopus 로고    scopus 로고
    • Streptococcus suis enolase functions as a protective antigen displayed on the bacterial cell surface
    • Feng, Y., Pan, X., Sun, W., Wang, C., Zhang, H., Li, X., Ma, Y., Shao, Z., Ge, J., Zheng, F., Gao, G.F., Tang, J., Streptococcus suis enolase functions as a protective antigen displayed on the bacterial cell surface. J. Infect Dis. 200:10 (2009), 1583–1592.
    • (2009) J. Infect Dis. , vol.200 , Issue.10 , pp. 1583-1592
    • Feng, Y.1    Pan, X.2    Sun, W.3    Wang, C.4    Zhang, H.5    Li, X.6    Ma, Y.7    Shao, Z.8    Ge, J.9    Zheng, F.10    Gao, G.F.11    Tang, J.12
  • 21
    • 22244439504 scopus 로고    scopus 로고
    • Recognition of Staphylococcus aureus by the innate immune system
    • Fournier, B., Philpott, D.J., Recognition of Staphylococcus aureus by the innate immune system. Clin. Microbiol. Rev. 18:3 (2005), 521–540.
    • (2005) Clin. Microbiol. Rev. , vol.18 , Issue.3 , pp. 521-540
    • Fournier, B.1    Philpott, D.J.2
  • 22
    • 57149093798 scopus 로고    scopus 로고
    • A structural model of the Staphylococcus aureus ClfA-fibrinogen interaction opens new avenues for the design of anti-staphylococcal therapeutics
    • e1000226
    • Ganesh, V.K., Rivera, J.J., Smeds, E., Ko, Y.P., Bowden, M.G., Wann, E.R., Gurusiddappa, S., Fitzgerald, J.R., Hook, M., A structural model of the Staphylococcus aureus ClfA-fibrinogen interaction opens new avenues for the design of anti-staphylococcal therapeutics. PLoS Pathog., 4(11), 2008, e1000226.
    • (2008) PLoS Pathog. , vol.4 , Issue.11
    • Ganesh, V.K.1    Rivera, J.J.2    Smeds, E.3    Ko, Y.P.4    Bowden, M.G.5    Wann, E.R.6    Gurusiddappa, S.7    Fitzgerald, J.R.8    Hook, M.9
  • 23
    • 70349433674 scopus 로고    scopus 로고
    • Anti-Staphylococcus aureus immunotherapy: current status and prospects
    • García-Lara, J., Foster, S.J., Anti-Staphylococcus aureus immunotherapy: current status and prospects. Curr. Opin. Pharmacol. 9:5 (2009), 552–557.
    • (2009) Curr. Opin. Pharmacol. , vol.9 , Issue.5 , pp. 552-557
    • García-Lara, J.1    Foster, S.J.2
  • 28
    • 0024046835 scopus 로고
    • Model building of disulfide bonds in proteins with known three-dimensional structure
    • Hazes, B., Dijkstra, B.W., Model building of disulfide bonds in proteins with known three-dimensional structure. Protein Eng. 2:2 (1988), 119–125.
    • (1988) Protein Eng. , vol.2 , Issue.2 , pp. 119-125
    • Hazes, B.1    Dijkstra, B.W.2
  • 29
    • 84883590772 scopus 로고    scopus 로고
    • GalaxyRefine: protein structure refinement driven by side-chain repacking
    • Heo, L., Park, H., Seok, C., GalaxyRefine: protein structure refinement driven by side-chain repacking. Nucleic Acids Res. 41 (2013), W384–W388.
    • (2013) Nucleic Acids Res. , vol.41 , pp. W384-W388
    • Heo, L.1    Park, H.2    Seok, C.3
  • 30
  • 31
    • 0037310114 scopus 로고    scopus 로고
    • Risk of methicillin-resistant Staphylococcus aureus infection after previous infection or colonization
    • Huang, S.S., Platt, R., Risk of methicillin-resistant Staphylococcus aureus infection after previous infection or colonization. Clin. Infect. Dis. 36:3 (2003), 281–285.
    • (2003) Clin. Infect. Dis. , vol.36 , Issue.3 , pp. 281-285
    • Huang, S.S.1    Platt, R.2
  • 33
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W., Sander, C., Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:12 (1983), 2577–2637.
    • (1983) Biopolymers , vol.22 , Issue.12 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 34
    • 71749118913 scopus 로고    scopus 로고
    • Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer
    • Kang, J.Y., Nan, X., Jin, M.S., Youn, S.J., Ryu, Y.H., Mah, S., Han, S.H., Lee, H., Paik, S.G., Lee, J.O., Recognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer. Immunity 31:6 (2009), 873–884.
    • (2009) Immunity , vol.31 , Issue.6 , pp. 873-884
    • Kang, J.Y.1    Nan, X.2    Jin, M.S.3    Youn, S.J.4    Ryu, Y.H.5    Mah, S.6    Han, S.H.7    Lee, H.8    Paik, S.G.9    Lee, J.O.10
  • 35
    • 84930074657 scopus 로고    scopus 로고
    • The Phyre2 web portal for protein modeling, prediction and analysis
    • Kelley, L.A., Mezulis, S., Yates, C.M., Wass, M.N., Sternberg, M.J., The Phyre2 web portal for protein modeling, prediction and analysis. Nat. Protoc. 10:6 (2015), 845–858.
    • (2015) Nat. Protoc. , vol.10 , Issue.6 , pp. 845-858
    • Kelley, L.A.1    Mezulis, S.2    Yates, C.M.3    Wass, M.N.4    Sternberg, M.J.5
  • 37
    • 84872049601 scopus 로고    scopus 로고
    • Reliable B cell epitope predictions: impacts of method development and improved benchmarking
    • e1002829
    • Kringelum, J.V., Lundegaard, C., Lund, O., Nielsen, M., Reliable B cell epitope predictions: impacts of method development and improved benchmarking. PLoS Comput. Biol., 8(12), 2012, e1002829.
    • (2012) PLoS Comput. Biol. , vol.8 , Issue.12
    • Kringelum, J.V.1    Lundegaard, C.2    Lund, O.3    Nielsen, M.4
  • 38
    • 33645512072 scopus 로고    scopus 로고
    • A novel Staphylococcus aureus vaccine: iron surface determinant B induces rapid antibody responses in rhesus macaques and specific increased survival in a murine S. aureus sepsis model
    • Kuklin, N.A., Clark, D.J., Secore, S., Cook, J., Cope, L.D., McNeely, T., Noble, L., Brown, M.J., Zorman, J.K., Wang, X.M., A novel Staphylococcus aureus vaccine: iron surface determinant B induces rapid antibody responses in rhesus macaques and specific increased survival in a murine S. aureus sepsis model. Infect. Immun. 74:4 (2006), 2215–2223.
    • (2006) Infect. Immun. , vol.74 , Issue.4 , pp. 2215-2223
    • Kuklin, N.A.1    Clark, D.J.2    Secore, S.3    Cook, J.4    Cope, L.D.5    McNeely, T.6    Noble, L.7    Brown, M.J.8    Zorman, J.K.9    Wang, X.M.10
  • 39
    • 85026262422 scopus 로고    scopus 로고
    • The role of Staphylococcus aureus virulence factors in skin infection and their potential as vaccine antigens
    • Lacey, K.A., Geoghegan, J.A., McLoughlin, R.M., The role of Staphylococcus aureus virulence factors in skin infection and their potential as vaccine antigens. Pathogens, 5(1), 2016, 22.
    • (2016) Pathogens , vol.5 , Issue.1 , pp. 22
    • Lacey, K.A.1    Geoghegan, J.A.2    McLoughlin, R.M.3
  • 40
    • 84896812498 scopus 로고    scopus 로고
    • Phenol-soluble modulins: novel virulence-associated peptides of staphylococci
    • Li, S., Huang, H., Rao, X., Chen, W., Wang, Z., Hu, X., Phenol-soluble modulins: novel virulence-associated peptides of staphylococci. Future Microbiol 9:2 (2014), 203–216.
    • (2014) Future Microbiol , vol.9 , Issue.2 , pp. 203-216
    • Li, S.1    Huang, H.2    Rao, X.3    Chen, W.4    Wang, Z.5    Hu, X.6
  • 41
    • 0032571811 scopus 로고    scopus 로고
    • Methicillin-resistant Staphylococcus aureus in a high school wrestling team and the surrounding community
    • Lindenmayer, J.M., Schoenfeld, S., O'Grady, R., Carney, J.K., Methicillin-resistant Staphylococcus aureus in a high school wrestling team and the surrounding community. Arch. Intern. Med. 158:8 (1998), 895–899.
    • (1998) Arch. Intern. Med. , vol.158 , Issue.8 , pp. 895-899
    • Lindenmayer, J.M.1    Schoenfeld, S.2    O'Grady, R.3    Carney, J.K.4
  • 43
    • 79959970988 scopus 로고    scopus 로고
    • PAComplex: a web server to infer peptide antigen families and binding models from TCR–pMHC complexes
    • Liu, I.H., Lo, Y.S., Yang, J.M., PAComplex: a web server to infer peptide antigen families and binding models from TCR–pMHC complexes. Nucleic Acids Res. 39:Suppl. 2 (2011), W254–W260.
    • (2011) Nucleic Acids Res. , vol.39 , pp. W254-W260
    • Liu, I.H.1    Lo, Y.S.2    Yang, J.M.3
  • 44
    • 55249097443 scopus 로고    scopus 로고
    • Radius of gyration is indicator of compactness of protein structure
    • Lobanov, M., Bogatyreva, N., Galzitskaia, O., Radius of gyration is indicator of compactness of protein structure. Mol. Biol. 42:4 (2007), 701–706.
    • (2007) Mol. Biol. , vol.42 , Issue.4 , pp. 701-706
    • Lobanov, M.1    Bogatyreva, N.2    Galzitskaia, O.3
  • 46
    • 0038665502 scopus 로고    scopus 로고
    • Antimicrobial resistance: the example of Staphylococcus aureus
    • Lowy, F.D., Antimicrobial resistance: the example of Staphylococcus aureus. J. Clin. Invest. 111:9 (2003), 1265–1273.
    • (2003) J. Clin. Invest. , vol.111 , Issue.9 , pp. 1265-1273
    • Lowy, F.D.1
  • 47
    • 84907487648 scopus 로고    scopus 로고
    • SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity
    • Magnan, C.N., Baldi, P., SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity. Bioinformatics 30:18 (2014), 2592–2597.
    • (2014) Bioinformatics , vol.30 , Issue.18 , pp. 2592-2597
    • Magnan, C.N.1    Baldi, P.2
  • 48
    • 0031967785 scopus 로고    scopus 로고
    • Clinical experience and outcomes of community-acquired and nosocomial methicillin-resistant Staphylococcus aureus in a northern Australian hospital
    • Maguire, G., Arthur, A., Boustead, P., Dwyer, B., Currie, B., Clinical experience and outcomes of community-acquired and nosocomial methicillin-resistant Staphylococcus aureus in a northern Australian hospital. J. Hosp. Infect. 38:4 (1998), 273–281.
    • (1998) J. Hosp. Infect. , vol.38 , Issue.4 , pp. 273-281
    • Maguire, G.1    Arthur, A.2    Boustead, P.3    Dwyer, B.4    Currie, B.5
  • 49
    • 49049084915 scopus 로고    scopus 로고
    • IFN-γ regulated chemokine production determines the outcome of Staphylococcus aureus infection
    • McLoughlin, R.M., Lee, J.C., Kasper, D.L., Tzianabos, A.O., IFN-γ regulated chemokine production determines the outcome of Staphylococcus aureus infection. J. Immunol. 181:2 (2008), 1323–1332.
    • (2008) J. Immunol. , vol.181 , Issue.2 , pp. 1323-1332
    • McLoughlin, R.M.1    Lee, J.C.2    Kasper, D.L.3    Tzianabos, A.O.4
  • 51
    • 77957734605 scopus 로고    scopus 로고
    • Role of interleukin-17A in cell-mediated protection against Staphylococcus aureus infection in mice immunized with the fibrinogen-binding domain of clumping factor A
    • Narita, K., Hu, D.L., Mori, F., Wakabayashi, K., Iwakura, Y., Nakane, A., Role of interleukin-17A in cell-mediated protection against Staphylococcus aureus infection in mice immunized with the fibrinogen-binding domain of clumping factor A. Infect. Immun. 78:10 (2010), 4234–4242.
    • (2010) Infect. Immun. , vol.78 , Issue.10 , pp. 4234-4242
    • Narita, K.1    Hu, D.L.2    Mori, F.3    Wakabayashi, K.4    Iwakura, Y.5    Nakane, A.6
  • 52
    • 85006321440 scopus 로고    scopus 로고
    • A panoramic review and in silico analysis of IL-11 structure and function
    • Negahdaripour, M., Nezafat, N., Ghasemi, Y., A panoramic review and in silico analysis of IL-11 structure and function. Cytokine Growth Factor Rev., 2016, 10.1016/j.cytogfr.2016.06.002.
    • (2016) Cytokine Growth Factor Rev.
    • Negahdaripour, M.1    Nezafat, N.2    Ghasemi, Y.3
  • 53
    • 84896964486 scopus 로고    scopus 로고
    • A novel multi-epitope peptide vaccine against cancer: an in silico approach
    • Nezafat, N., Ghasemi, Y., Javadi, G., Khoshnoud, M.J., Omidinia, E., A novel multi-epitope peptide vaccine against cancer: an in silico approach. J. Theor. Biol. 349 (2014), 121–134.
    • (2014) J. Theor. Biol. , vol.349 , pp. 121-134
    • Nezafat, N.1    Ghasemi, Y.2    Javadi, G.3    Khoshnoud, M.J.4    Omidinia, E.5
  • 54
    • 84963960848 scopus 로고    scopus 로고
    • Designing an efficient multi-epitope peptide vaccine against Vibrio cholerae via combined immunoinformatics and protein interaction based approaches
    • Nezafat, N., Karimi, Z., Eslami, M., Mohkam, M., Zandian, S., Ghasemi, Y., Designing an efficient multi-epitope peptide vaccine against Vibrio cholerae via combined immunoinformatics and protein interaction based approaches. Comput. Biol. Chem. 62 (2016), 82–95.
    • (2016) Comput. Biol. Chem. , vol.62 , pp. 82-95
    • Nezafat, N.1    Karimi, Z.2    Eslami, M.3    Mohkam, M.4    Zandian, S.5    Ghasemi, Y.6
  • 55
    • 0034947535 scopus 로고    scopus 로고
    • Multifunctional α-enolase: its role in diseases
    • Pancholi, V., Multifunctional α-enolase: its role in diseases. Cell. Mol. Life Sci. 58:7 (2001), 902–920.
    • (2001) Cell. Mol. Life Sci. , vol.58 , Issue.7 , pp. 902-920
    • Pancholi, V.1
  • 56
    • 55649101874 scopus 로고    scopus 로고
    • Vaccine adjuvant systems: enhancing the efficacy of sub-unit protein antigens
    • Perrie, Y., Mohammed, A.R., Kirby, D.J., McNeil, S.E., Bramwell, V.W., Vaccine adjuvant systems: enhancing the efficacy of sub-unit protein antigens. Int. J. Pharm. 364:2 (2008), 272–280.
    • (2008) Int. J. Pharm. , vol.364 , Issue.2 , pp. 272-280
    • Perrie, Y.1    Mohammed, A.R.2    Kirby, D.J.3    McNeil, S.E.4    Bramwell, V.W.5
  • 57
    • 0036227252 scopus 로고    scopus 로고
    • Molecular dynamics simulations as a tool for improving protein stability
    • Pikkemaat, M.G., Linssen, A.B., Berendsen, H.J., Janssen, D.B., Molecular dynamics simulations as a tool for improving protein stability. Protein Eng. 15:3 (2002), 185–192.
    • (2002) Protein Eng. , vol.15 , Issue.3 , pp. 185-192
    • Pikkemaat, M.G.1    Linssen, A.B.2    Berendsen, H.J.3    Janssen, D.B.4
  • 58
    • 84859424015 scopus 로고    scopus 로고
    • Is there a future for a Staphylococcus aureus vaccine?
    • Proctor, R.A., Is there a future for a Staphylococcus aureus vaccine?. Vaccine 30:19 (2012), 2921–2927.
    • (2012) Vaccine , vol.30 , Issue.19 , pp. 2921-2927
    • Proctor, R.A.1
  • 60
    • 44649189266 scopus 로고    scopus 로고
    • Prediction of peptide-MHC binding using profiles
    • Reche, P.A., Reinherz, E.L., Prediction of peptide-MHC binding using profiles. Methods Mol. Biol. 409 (2007), 185–200.
    • (2007) Methods Mol. Biol. , vol.409 , pp. 185-200
    • Reche, P.A.1    Reinherz, E.L.2
  • 62
    • 33747871140 scopus 로고    scopus 로고
    • AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
    • Saha, S., Raghava, G., AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. Nucleic Acids Res. 34:Suppl. 2 (2006), W202–W209.
    • (2006) Nucleic Acids Res. , vol.34 , pp. W202-W209
    • Saha, S.1    Raghava, G.2
  • 63
    • 53849102169 scopus 로고    scopus 로고
    • Vaccination and passive immunisation against Staphylococcus aureus
    • Schaffer, A.C., Lee, J.C., Vaccination and passive immunisation against Staphylococcus aureus. Int. J. Antimicrob. Agents 32 (2008), S71–S78.
    • (2008) Int. J. Antimicrob. Agents , vol.32 , pp. S71-S78
    • Schaffer, A.C.1    Lee, J.C.2
  • 64
    • 84959126718 scopus 로고    scopus 로고
    • In silico sub-unit hexavalent peptide vaccine against an Staphylococcus aureus biofilm-related infection
    • Shahbazi, M., Haghkhah, M., Rahbar, M.R., Nezafat, N., Ghasemi, Y., In silico sub-unit hexavalent peptide vaccine against an Staphylococcus aureus biofilm-related infection. Int. J. Pept. Res. Ther. 1:22 (2016), 101–117.
    • (2016) Int. J. Pept. Res. Ther. , vol.1 , Issue.22 , pp. 101-117
    • Shahbazi, M.1    Haghkhah, M.2    Rahbar, M.R.3    Nezafat, N.4    Ghasemi, Y.5
  • 65
    • 0037606124 scopus 로고    scopus 로고
    • ProPred1: prediction of promiscuous MHC Class-I binding sites
    • Singh, H., Raghava, G., ProPred1: prediction of promiscuous MHC Class-I binding sites. Bioinformatics 19:8 (2003), 1009–1014.
    • (2003) Bioinformatics , vol.19 , Issue.8 , pp. 1009-1014
    • Singh, H.1    Raghava, G.2
  • 66
    • 84859833461 scopus 로고    scopus 로고
    • Development of a vaccine against Staphylococcus aureus
    • Spellberg, B., Daum, R., Development of a vaccine against Staphylococcus aureus. Semin. Immunopathol. 34:2 (2012), 335–348.
    • (2012) Semin. Immunopathol. , vol.34 , Issue.2 , pp. 335-348
    • Spellberg, B.1    Daum, R.2
  • 67
    • 33750933334 scopus 로고    scopus 로고
    • Vaccine assembly from surface proteins of Staphylococcus aureus
    • Stranger-Jones, Y.K., Bae, T., Schneewind, O., Vaccine assembly from surface proteins of Staphylococcus aureus. Proc. Natl. Acad. Sci. 103:45 (2006), 16942–16947.
    • (2006) Proc. Natl. Acad. Sci. , vol.103 , Issue.45 , pp. 16942-16947
    • Stranger-Jones, Y.K.1    Bae, T.2    Schneewind, O.3
  • 69
    • 10744226063 scopus 로고    scopus 로고
    • Anti-clumping factor A immunoglobulin reduces the duration of methicillin-resistant Staphylococcus aureus bacteremia in an experimental model of infective endocarditis
    • Vernachio, J., Bayer, A.S., Le, T., Chai, Y.L., Prater, B., Schneider, A., Ames, B., Syribeys, P., Robbins, J., Patti, J.M., Anti-clumping factor A immunoglobulin reduces the duration of methicillin-resistant Staphylococcus aureus bacteremia in an experimental model of infective endocarditis. Antimicrob. Agents Chemother. 47:11 (2003), 3400–3406.
    • (2003) Antimicrob. Agents Chemother. , vol.47 , Issue.11 , pp. 3400-3406
    • Vernachio, J.1    Bayer, A.S.2    Le, T.3    Chai, Y.L.4    Prater, B.5    Schneider, A.6    Ames, B.7    Syribeys, P.8    Robbins, J.9    Patti, J.M.10
  • 70
    • 42949139524 scopus 로고    scopus 로고
    • A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach
    • e1000048
    • Wang, P., Sidney, J., Dow, C., Mothe, B., Sette, A., Peters, B., A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach. PLoS Comput. Biol., 4(4), 2008, e1000048.
    • (2008) PLoS Comput. Biol. , vol.4 , Issue.4
    • Wang, P.1    Sidney, J.2    Dow, C.3    Mothe, B.4    Sette, A.5    Peters, B.6
  • 72
    • 34547566446 scopus 로고    scopus 로고
    • ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
    • Wiederstein, M., Sippl, M.J., ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res. 35:Suppl. 2 (2007), W407–W410.
    • (2007) Nucleic Acids Res. , vol.35 , pp. W407-W410
    • Wiederstein, M.1    Sippl, M.J.2
  • 73
    • 84925156346 scopus 로고    scopus 로고
    • The I-TASSER Suite: protein structure and function prediction
    • Yang, J., Yan, R., Roy, A., Xu, D., Poisson, J., Zhang, Y., The I-TASSER Suite: protein structure and function prediction. Nat. Methods 12:1 (2015), 7–8.
    • (2015) Nat. Methods , vol.12 , Issue.1 , pp. 7-8
    • Yang, J.1    Yan, R.2    Roy, A.3    Xu, D.4    Poisson, J.5    Zhang, Y.6
  • 74
    • 0037833535 scopus 로고    scopus 로고
    • Bioinformatics: how it is being used to identify bacterial vaccine candidates
    • Zagursky, R.J., Olmsted, S.B., Russell, D.P., Wooters, J.L., Bioinformatics: how it is being used to identify bacterial vaccine candidates. Expert Rev. Vaccines 2:3 (2003), 417–436.
    • (2003) Expert Rev. Vaccines , vol.2 , Issue.3 , pp. 417-436
    • Zagursky, R.J.1    Olmsted, S.B.2    Russell, D.P.3    Wooters, J.L.4
  • 75
    • 84877794313 scopus 로고    scopus 로고
    • Iron-regulated surface determinant B (IsdB) promotes Staphylococcus aureus adherence to and internalization by non-phagocytic human cells
    • Zapotoczna, M., Jevnikar, Z., Miajlovic, H., Kos, J., Foster, T.J., Iron-regulated surface determinant B (IsdB) promotes Staphylococcus aureus adherence to and internalization by non-phagocytic human cells. Cell. Microbiol. 15:6 (2013), 1026–1041.
    • (2013) Cell. Microbiol. , vol.15 , Issue.6 , pp. 1026-1041
    • Zapotoczna, M.1    Jevnikar, Z.2    Miajlovic, H.3    Kos, J.4    Foster, T.J.5
  • 76
    • 84937943776 scopus 로고    scopus 로고
    • Multiple B-cell epitope vaccine induces a Staphylococcus enterotoxin B-specific IgG1 protective response against MRSA infection
    • Zhao, Z., Sun, H.Q., Wei, S.S., Li, B., Feng, Q., Zhu, J., Zeng, H., Zou, Q.M., Wu, C., Multiple B-cell epitope vaccine induces a Staphylococcus enterotoxin B-specific IgG1 protective response against MRSA infection. Sci. Rep., 5, 2015, 12371.
    • (2015) Sci. Rep. , vol.5 , pp. 12371
    • Zhao, Z.1    Sun, H.Q.2    Wei, S.S.3    Li, B.4    Feng, Q.5    Zhu, J.6    Zeng, H.7    Zou, Q.M.8    Wu, C.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.