-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 1:CAS:528:DyaK2sXlvFyhu7w%3D 9254694
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
37549035397
-
Genome sequence of Staphylococcus aureus strain Newman and comparative analysis of staphylococcal genomes: Polymorphism and evolution of two major pathogenicity islands
-
2223734 1:CAS:528:DC%2BD1cXhsF2rsw%3D%3D 17951380
-
Baba T, Bae T, Schneewind O, Takeuchi F, Hiramatsu K (2008) Genome sequence of Staphylococcus aureus strain Newman and comparative analysis of staphylococcal genomes: polymorphism and evolution of two major pathogenicity islands. J Bacteriol 190:300-310
-
(2008)
J Bacteriol
, vol.190
, pp. 300-310
-
-
Baba, T.1
Bae, T.2
Schneewind, O.3
Takeuchi, F.4
Hiramatsu, K.5
-
3
-
-
61649121489
-
The use of genomics in microbial vaccine development
-
1:CAS:528:DC%2BD1MXjt1Shtrg%3D 19150507
-
Bambini S, Rappuoli R (2009) The use of genomics in microbial vaccine development. Drug Discov Today 14:252-260
-
(2009)
Drug Discov Today
, vol.14
, pp. 252-260
-
-
Bambini, S.1
Rappuoli, R.2
-
4
-
-
0035403493
-
Detection of differential gene expression in biofilm-forming versus planktonic populations of Staphylococcus aureus using micro-representational-difference analysis
-
92967 1:CAS:528:DC%2BD3MXkvFSntLg%3D 11425708
-
Becker P, Hufnagle W, Peters G, Herrmann M (2001) Detection of differential gene expression in biofilm-forming versus planktonic populations of Staphylococcus aureus using micro-representational-difference analysis. Appl Environ Microbiol 67:2958-2965
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2958-2965
-
-
Becker, P.1
Hufnagle, W.2
Peters, G.3
Herrmann, M.4
-
5
-
-
3042857766
-
Global gene expression in Staphylococcus aureus biofilms
-
438561 1:CAS:528:DC%2BD2cXmtVemsLo%3D 15231800
-
Beenken KE et al (2004) Global gene expression in Staphylococcus aureus biofilms. J Bacteriol 186:4665-4684
-
(2004)
J Bacteriol
, vol.186
, pp. 4665-4684
-
-
Beenken, K.E.1
-
6
-
-
85004911383
-
Positional flexibilities of amino acid residues in globular proteins
-
1:CAS:528:DyaL1MXitVSrtg%3D%3D
-
Bhaskaran R, Ponnuswamy P (1988) Positional flexibilities of amino acid residues in globular proteins. Int J Pept Protein Res 32:241-255
-
(1988)
Int J Pept Protein Res
, vol.32
, pp. 241-255
-
-
Bhaskaran, R.1
Ponnuswamy, P.2
-
7
-
-
12744279638
-
Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins
-
15319257
-
Björklund ÅK, Soeria-Atmadja D, Zorzet A, Hammerling U, Gustafsson MG (2005) Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins. Bioinformatics 21:39-50
-
(2005)
Bioinformatics
, vol.21
, pp. 39-50
-
-
Björklund, Å.1
Soeria-Atmadja, D.2
Zorzet, A.3
Hammerling, U.4
Gustafsson, M.G.5
-
8
-
-
0026069154
-
Amino acid scale: Hydrophobicity of physiological L-alpha amino acids
-
1:CAS:528:DyaK3MXitVejtrc%3D 2042744
-
Black S, Mould D (1991) Amino acid scale: hydrophobicity of physiological L-alpha amino acids. Anal Biochem 193:72-82
-
(1991)
Anal Biochem
, vol.193
, pp. 72-82
-
-
Black, S.1
Mould, D.2
-
9
-
-
33646923704
-
Identification of Staphylococcus aureus proteins recognized by the antibody-mediated immune response to a biofilm infection
-
1479260 1:CAS:528:DC%2BD28Xlt1Cgu7s%3D 16714572
-
Brady RA, Leid JG, Camper AK, Costerton JW, Shirtliff ME (2006) Identification of Staphylococcus aureus proteins recognized by the antibody-mediated immune response to a biofilm infection. Infect Immun 74:3415-3426
-
(2006)
Infect Immun
, vol.74
, pp. 3415-3426
-
-
Brady, R.A.1
Leid, J.G.2
Camper, A.K.3
Costerton, J.W.4
Shirtliff, M.E.5
-
10
-
-
79957595749
-
Strategies for and advances in the development of Staphylococcus aureus prophylactic vaccines
-
1:CAS:528:DC%2BC3MXmsFymu7Y%3D 21604989
-
Broughan J, Anderson R, Anderson A (2011) Strategies for and advances in the development of Staphylococcus aureus prophylactic vaccines. Expert Rev Vaccines 10:695-708
-
(2011)
Expert Rev Vaccines
, vol.10
, pp. 695-708
-
-
Broughan, J.1
Anderson, R.2
Anderson, A.3
-
11
-
-
84883591545
-
Scalable web services for the PSIPRED protein analysis workbench
-
3692098 23748958
-
Buchan DW, Minneci F, Nugent TC, Bryson K, Jones DT (2013) Scalable web services for the PSIPRED protein analysis workbench. Nucleic Acids Res 41:W349-W357
-
(2013)
Nucleic Acids Res
, vol.41
, pp. W349-W357
-
-
Buchan, D.W.1
Minneci, F.2
Nugent, T.C.3
Bryson, K.4
Jones, D.T.5
-
12
-
-
0034964768
-
Emergence of methicillin-resistant Staphylococcus aureus as a community pathogen
-
1:CAS:528:DC%2BD3MXltVarsr0%3D 11448556
-
Bukharie H, Abdelhadi M, SaeedI RA, Larbi E (2001) Emergence of methicillin-resistant Staphylococcus aureus as a community pathogen. Diagn Microbiol Infect Dis 40:1-4
-
(2001)
Diagn Microbiol Infect Dis
, vol.40
, pp. 1-4
-
-
Bukharie, H.1
Abdelhadi, M.2
SaeedI, R.A.3
Larbi, E.4
-
13
-
-
0035050284
-
Bap, a Staphylococcus aureus surface protein involved in biofilm formation
-
99507 1:CAS:528:DC%2BD3MXivFOksLo%3D 11292810
-
Cucarella C, Solano C, Valle J, Amorena B, Lasa Í, Penadés JR (2001) Bap, a Staphylococcus aureus surface protein involved in biofilm formation. J Bacteriol 183:2888-2896
-
(2001)
J Bacteriol
, vol.183
, pp. 2888-2896
-
-
Cucarella, C.1
Solano, C.2
Valle, J.3
Amorena, B.4
Lasa, Í.5
Penadés, J.R.6
-
14
-
-
34247388467
-
Harnessing bioinformatics to discover new vaccines
-
Davies MN, Flower DR (2007) Harnessing bioinformatics to discover new vaccines. Drug Discov Today 12:389-395. doi: 10.1016/j.drudis.2007.03.010
-
(2007)
Drug Discov Today
, vol.12
, pp. 389-395
-
-
Davies, M.N.1
Flower, D.R.2
-
15
-
-
55549131491
-
The evolution of Staphylococcus aureus
-
1:CAS:528:DC%2BD1cXhtlyhsbzN 18718557
-
Deurenberg RH, Stobberingh EE (2008) The evolution of Staphylococcus aureus. Infect Genet Evol 8:747-763
-
(2008)
Infect Genet Evol
, vol.8
, pp. 747-763
-
-
Deurenberg, R.H.1
Stobberingh, E.E.2
-
16
-
-
33847031827
-
VaxiJen: A server for prediction of protective antigens, tumour antigens and subunit vaccines
-
Doytchinova IA, Flower DR (2007) VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines. BMC Bioinform 8:4
-
(2007)
BMC Bioinform
, vol.8
, pp. 4
-
-
Doytchinova, I.A.1
Flower, D.R.2
-
17
-
-
79960425958
-
The cell surface proteome of Staphylococcus aureus
-
1:CAS:528:DC%2BC3MXovFClu7Y%3D 21630461
-
Dreisbach A, van Dijl JM, Buist G (2011) The cell surface proteome of Staphylococcus aureus. Proteomics 11:3154-3168
-
(2011)
Proteomics
, vol.11
, pp. 3154-3168
-
-
Dreisbach, A.1
Van Dijl, J.M.2
Buist, G.3
-
18
-
-
84899875092
-
O-Mannosylation in Candida albicans enables development of interkingdom biofilm communities
-
3993854 24736223
-
Dutton LC et al (2014) O-Mannosylation in Candida albicans enables development of interkingdom biofilm communities. mBio 5:e00911-00914
-
(2014)
MBio
, vol.5
, pp. e00911-00914
-
-
Dutton, L.C.1
-
19
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
390337 1:CAS:528:DC%2BD2cXisF2ks7w%3D 15034147
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
20
-
-
84977832023
-
Designing of complex multi-epitope peptide vaccine based on omps of Klebsiella pneumoniae: An in silico approach
-
Farhadi T, Nezafat N, Ghasemi Y, Karimi Z, Hemmati S, Erfani N (2015) Designing of complex multi-epitope peptide vaccine based on omps of Klebsiella pneumoniae: an in silico approach. Int J Pept Res Ther 2015:1-17
-
(2015)
Int J Pept Res Ther
, vol.2015
, pp. 1-17
-
-
Farhadi, T.1
Nezafat, N.2
Ghasemi, Y.3
Karimi, Z.4
Hemmati, S.5
Erfani, N.6
-
21
-
-
38049165543
-
Localizing frustration in native proteins and protein assemblies
-
2148382 1:CAS:528:DC%2BD1cXitFSrtA%3D%3D 18077414
-
Ferreiro DU, Hegler JA, Komives EA, Wolynes PG (2007) Localizing frustration in native proteins and protein assemblies. Proc Natl Acad Sci 104:19819-19824
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 19819-19824
-
-
Ferreiro, D.U.1
Hegler, J.A.2
Komives, E.A.3
Wolynes, P.G.4
-
22
-
-
84890522378
-
Adhesion, invasion and evasion: The many functions of the surface proteins of Staphylococcus aureus
-
1:CAS:528:DC%2BC3sXhvFentLvO 24336184
-
Foster TJ, Geoghegan JA, Ganesh VK, Höök M (2014) Adhesion, invasion and evasion: the many functions of the surface proteins of Staphylococcus aureus. Nat Rev Microbiol 12:49-62
-
(2014)
Nat Rev Microbiol
, vol.12
, pp. 49-62
-
-
Foster, T.J.1
Geoghegan, J.A.2
Ganesh, V.K.3
Höök, M.4
-
23
-
-
84875655969
-
Effect of an investigational vaccine for preventing Staphylococcus aureus infections after cardiothoracic surgery: A randomized trial
-
1:CAS:528:DC%2BC3sXlvVSkurs%3D 23549582
-
Fowler VG et al (2013) Effect of an investigational vaccine for preventing Staphylococcus aureus infections after cardiothoracic surgery: a randomized trial. JAMA 309:1368-1378
-
(2013)
JAMA
, vol.309
, pp. 1368-1378
-
-
Fowler, V.G.1
-
24
-
-
48449095267
-
PVS: A web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery
-
2447719 1:CAS:528:DC%2BD1cXptlKku78%3D 18442995
-
Garcia-Boronat M, Diez-Rivero CM, Reinherz EL, Reche PA (2008) PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery. Nucleic Acids Res 36:W35-W41
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W35-W41
-
-
Garcia-Boronat, M.1
Diez-Rivero, C.M.2
Reinherz, E.L.3
Reche, P.A.4
-
25
-
-
27144505097
-
Protein identification and analysis tools on the ExPASy server
-
J.M. Walker (eds) Springer New York
-
Gasteiger E, Hoogland C, Gattiker A, Wilkins MR, Appel RD, Bairoch A (2005) Protein identification and analysis tools on the ExPASy server. In: Walker JM (ed) The proteomics protocols handbook. Springer, New York, pp 571-607
-
(2005)
The Proteomics Protocols Handbook
, pp. 571-607
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Wilkins, M.R.4
Appel, R.D.5
Bairoch, A.6
-
26
-
-
84867692604
-
The possible role of HSPs on Behçet's disease: A bioinformatic approach
-
1:CAS:528:DC%2BC38XhsVemtLvJ 23036375
-
Ghasemi Y, Dabbagh F, Rasoul-Amini S, Haghighi AB, Morowvat MH (2012) The possible role of HSPs on Behçet's disease: a bioinformatic approach. Comput Biol Med 42:1079-1085
-
(2012)
Comput Biol Med
, vol.42
, pp. 1079-1085
-
-
Ghasemi, Y.1
Dabbagh, F.2
Rasoul-Amini, S.3
Haghighi, A.B.4
Morowvat, M.H.5
-
27
-
-
84977871365
-
Cloning, characterization and bioinformatics analysis of novel cytosine deaminase from Escherichia coli AGH09
-
Gholami A, Shahin S, Mohkam M, Nezafat N, Ghasemi Y (2015) Cloning, characterization and bioinformatics analysis of novel cytosine deaminase from Escherichia coli AGH09. Int J Pept Res Ther 2015:1-10
-
(2015)
Int J Pept Res Ther
, vol.2015
, pp. 1-10
-
-
Gholami, A.1
Shahin, S.2
Mohkam, M.3
Nezafat, N.4
Ghasemi, Y.5
-
28
-
-
1242341376
-
RT-PCR detection of Candida albicans ALS gene expression in the reconstituted human epithelium (RHE) model of oral candidiasis and in model biofilms
-
1:CAS:528:DC%2BD2cXhsVSrsbc%3D 14766904
-
Green CB, Cheng G, Chandra J, Mukherjee P, Ghannoum MA, Hoyer LL (2004) RT-PCR detection of Candida albicans ALS gene expression in the reconstituted human epithelium (RHE) model of oral candidiasis and in model biofilms. Microbiology 150:267-275
-
(2004)
Microbiology
, vol.150
, pp. 267-275
-
-
Green, C.B.1
Cheng, G.2
Chandra, J.3
Mukherjee, P.4
Ghannoum, M.A.5
Hoyer, L.L.6
-
29
-
-
79958184746
-
Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes
-
3626422 1:CAS:528:DC%2BC3MXlvFOqurw%3D 21305276
-
Greenbaum J, Sidney J, Chung J, Brander C, Peters B, Sette A (2011) Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes. Immunogenetics 63:325-335
-
(2011)
Immunogenetics
, vol.63
, pp. 325-335
-
-
Greenbaum, J.1
Sidney, J.2
Chung, J.3
Brander, C.4
Peters, B.5
Sette, A.6
-
30
-
-
53649097678
-
Candida albicans-endothelial cell interactions: A key step in the pathogenesis of systemic candidiasis
-
2546854 1:CAS:528:DC%2BD1cXhtF2jtb3L 18573891
-
Grubb SE, Murdoch C, Sudbery PE, Saville SP, Lopez-Ribot JL, Thornhill MH (2008) Candida albicans-endothelial cell interactions: a key step in the pathogenesis of systemic candidiasis. Infect Immun 76:4370-4377
-
(2008)
Infect Immun
, vol.76
, pp. 4370-4377
-
-
Grubb, S.E.1
Murdoch, C.2
Sudbery, P.E.3
Saville, S.P.4
Lopez-Ribot, J.L.5
Thornhill, M.H.6
-
31
-
-
0025612425
-
Correlation between stability of a protein and its dipeptide composition: A novel approach for predicting in vivo stability of a protein from its primary sequence
-
1:CAS:528:DyaK3MXlslOktw%3D%3D 2075190
-
Guruprasad K, Reddy BB, Pandit MW (1990) Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Eng 4:155-161
-
(1990)
Protein Eng
, vol.4
, pp. 155-161
-
-
Guruprasad, K.1
Reddy, B.B.2
Pandit, M.W.3
-
32
-
-
77956132510
-
Ability of Candida albicans mutants to induce Staphylococcus aureus vancomycin resistance during polymicrobial biofilm formation
-
2934986 1:CAS:528:DC%2BC3cXht12ktL%2FP 20566760
-
Harriott MM, Noverr MC (2010) Ability of Candida albicans mutants to induce Staphylococcus aureus vancomycin resistance during polymicrobial biofilm formation. Antimicrob Agents Chemother 54:3746-3755
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 3746-3755
-
-
Harriott, M.M.1
Noverr, M.C.2
-
33
-
-
78649837727
-
Safety and immunogenicity of a novel Staphylococcus aureus vaccine: Results from the first study of the vaccine dose range in humans
-
3008200 1:CAS:528:DC%2BC3MXhtFGmsQ%3D%3D 20943877
-
Harro C et al (2010a) Safety and immunogenicity of a novel Staphylococcus aureus vaccine: results from the first study of the vaccine dose range in humans. Clin Vaccine Immunol 17:1868-1874
-
(2010)
Clin Vaccine Immunol
, vol.17
, pp. 1868-1874
-
-
Harro, C.1
-
34
-
-
77954637231
-
Vaccine development in Staphylococcus aureus: Taking the biofilm phenotype into consideration
-
2936112 1:CAS:528:DC%2BC3cXhtVeju77K 20602638
-
Harro JM, Peters BM, O'May GA, Archer N, Kerns P, Prabhakara R, Shirtliff ME (2010b) Vaccine development in Staphylococcus aureus: taking the biofilm phenotype into consideration. FEMS Immunol Med Microbiol 59:306-323
-
(2010)
FEMS Immunol Med Microbiol
, vol.59
, pp. 306-323
-
-
Harro, J.M.1
Peters, B.M.2
O'May, G.A.3
Archer, N.4
Kerns, P.5
Prabhakara, R.6
Shirtliff, M.E.7
-
35
-
-
0037310114
-
Risk of methicillin-resistant Staphylococcus aureus infection after previous infection or colonization
-
12539068
-
Huang SS, Platt R (2003) Risk of methicillin-resistant Staphylococcus aureus infection after previous infection or colonization. Clin Infect Dis 36:281-285
-
(2003)
Clin Infect Dis
, vol.36
, pp. 281-285
-
-
Huang, S.S.1
Platt, R.2
-
36
-
-
80052342097
-
An in silico DNA vaccine against Listeria monocytogenes
-
1:CAS:528:DC%2BC3MXhtFaksb3P 21791233
-
Jahangiri A, Rasooli I, Gargari SLM, Owlia P, Rahbar MR, Amani J, Khalili S (2011) An in silico DNA vaccine against Listeria monocytogenes. Vaccine 29:6948-6958
-
(2011)
Vaccine
, vol.29
, pp. 6948-6958
-
-
Jahangiri, A.1
Rasooli, I.2
Gargari, S.L.M.3
Owlia, P.4
Rahbar, M.R.5
Amani, J.6
Khalili, S.7
-
37
-
-
0018784438
-
Surface and inside volumes in globular proteins
-
1:CAS:528:DyaE1MXktlCgsrc%3D 763335
-
Janin J (1979) Surface and inside volumes in globular proteins. Nature 277:491-492
-
(1979)
Nature
, vol.277
, pp. 491-492
-
-
Janin, J.1
-
38
-
-
84881152848
-
Prediction of methicillin-resistant Staphylococcus aureus in patients with non-nosocomial pneumonia
-
3751064 23937553
-
Jung WJ et al (2013) Prediction of methicillin-resistant Staphylococcus aureus in patients with non-nosocomial pneumonia. BMC Infect Dis 13:370
-
(2013)
BMC Infect Dis
, vol.13
, pp. 370
-
-
Jung, W.J.1
-
39
-
-
0034117358
-
Dotlet: Diagonal plots in a web browser
-
1:CAS:528:DC%2BD3cXktVyitrg%3D 10842741
-
Junier T, Pagni M (2000) Dotlet: diagonal plots in a web browser. Bioinformatics 16:178-179
-
(2000)
Bioinformatics
, vol.16
, pp. 178-179
-
-
Junier, T.1
Pagni, M.2
-
40
-
-
84857183448
-
Changes in community-associated methicillin-resistant Staphylococcus aureus skin and soft tissue infections presenting to the pediatric emergency department: Comparing 2003 to 2008
-
Karamatsu M, Thorp A, Brown L (2012) Changes in community-associated methicillin-resistant Staphylococcus aureus skin and soft tissue infections presenting to the pediatric emergency department: comparing 2003 to 2008. Pediatr Emerg Care 28:131-135. doi: 10.1097/PEC.0b013e318243fa36
-
(2012)
Pediatr Emerg Care
, vol.28
, pp. 131-135
-
-
Karamatsu, M.1
Thorp, A.2
Brown, L.3
-
41
-
-
0036093924
-
Multiple mechanisms for the activation of human platelet aggregation by Staphylococcus aureus: Roles for the clumping factors ClfA and ClfB, the serine-aspartate repeat protein SdrE and protein A
-
12010496
-
Kerrigan SW et al (2002) Multiple mechanisms for the activation of human platelet aggregation by Staphylococcus aureus: roles for the clumping factors ClfA and ClfB, the serine-aspartate repeat protein SdrE and protein A. Mol Microbiol 44:1033-1044
-
(2002)
Mol Microbiol
, vol.44
, pp. 1033-1044
-
-
Kerrigan, S.W.1
-
42
-
-
34249668846
-
Candida albicans Als proteins mediate aggregation with bacteria and yeasts
-
1:CAS:528:DC%2BD2sXltlOitrk%3D 17510860
-
Klotz SA, Gaur NK, De Armond R, Sheppard D, Khardori N, Edwards JE Jr, Lipke PN, El-Azizi M (2007) Candida albicans Als proteins mediate aggregation with bacteria and yeasts. Med Mycol 45(4):363-370
-
(2007)
Med Mycol
, vol.45
, Issue.4
, pp. 363-370
-
-
Klotz, S.A.1
Gaur, N.K.2
De Armond, R.3
Sheppard, D.4
Khardori, N.5
Edwards, J.E.6
Lipke, P.N.7
El-Azizi, M.8
-
43
-
-
0025605617
-
A semi-empirical method for prediction of antigenic determinants on protein antigens
-
1:CAS:528:DyaK3MXktVGntw%3D%3D 1702393
-
Kolaskar A, Tongaonkar PC (1990) A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett 276:172-174
-
(1990)
FEBS Lett
, vol.276
, pp. 172-174
-
-
Kolaskar, A.1
Tongaonkar, P.C.2
-
44
-
-
84872049601
-
Reliable B cell epitope predictions: Impacts of method development and improved benchmarking
-
3531324 1:CAS:528:DC%2BC3sXotVCltw%3D%3D 23300419
-
Kringelum JV, Lundegaard C, Lund O, Nielsen M (2012) Reliable B cell epitope predictions: impacts of method development and improved benchmarking. PLoS Comput Biol 8:e1002829
-
(2012)
PLoS Comput Biol
, vol.8
, pp. e1002829
-
-
Kringelum, J.V.1
Lundegaard, C.2
Lund, O.3
Nielsen, M.4
-
45
-
-
33751104704
-
Improved method for predicting linear B-cell epitopes
-
1479323 16635264
-
Larsen JE, Lund O, Nielsen M (2006) Improved method for predicting linear B-cell epitopes. Immunome Res 2:2
-
(2006)
Immunome Res
, vol.2
, pp. 2
-
-
Larsen, J.E.1
Lund, O.2
Nielsen, M.3
-
47
-
-
84859297309
-
CD4 T cell antigens from Staphylococcus aureus Newman strain identified following immunization with heat-killed bacteria
-
3318285 1:CAS:528:DC%2BC38Xlslams7c%3D 22323557
-
Lawrence PK, Rokbi B, Arnaud-Barbe N, Sutten EL, Norimine J, Lahmers KK, Brown WC (2012) CD4 T cell antigens from Staphylococcus aureus Newman strain identified following immunization with heat-killed bacteria. Clin Vaccine Immunol 19:477-489
-
(2012)
Clin Vaccine Immunol
, vol.19
, pp. 477-489
-
-
Lawrence, P.K.1
Rokbi, B.2
Arnaud-Barbe, N.3
Sutten, E.L.4
Norimine, J.5
Lahmers, K.K.6
Brown, W.C.7
-
48
-
-
0018093765
-
Conformational preferences of amino acids in globular proteins
-
1:CAS:528:DyaE1cXlslGgs7w%3D 708713
-
Levitt M (1978) Conformational preferences of amino acids in globular proteins. Biochemistry 17:4277-4285
-
(1978)
Biochemistry
, vol.17
, pp. 4277-4285
-
-
Levitt, M.1
-
49
-
-
74549186432
-
Th1-Th17 cells mediate protective adaptive immunity against Staphylococcus aureus and Candida albicans infection in mice
-
2792038 20041174
-
Lin L, Ibrahim AS, Xu X, Farber JM, Avanesian V, Baquir B, Fu Y, French SW, Edwards JE, Spellberg B (2009) Th1-Th17 cells mediate protective adaptive immunity against Staphylococcus aureus and Candida albicans infection in mice. PLoS Pathog 5:e1000703
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000703
-
-
Lin, L.1
Ibrahim, A.S.2
Xu, X.3
Farber, J.M.4
Avanesian, V.5
Baquir, B.6
Fu, Y.7
French, S.W.8
Edwards, J.E.9
Spellberg, B.10
-
50
-
-
68049137069
-
Molecular pathogenesis of Staphylococcus aureus infection
-
2919328 19190527
-
Liu GY (2009) Molecular pathogenesis of Staphylococcus aureus infection. Pediatr Res 65:71R-77R
-
(2009)
Pediatr Res
, vol.65
, pp. 71R-77R
-
-
Liu, G.Y.1
-
51
-
-
79957448536
-
How Staphylococcus aureus adapts to its host
-
1:CAS:528:DC%2BC3MXmsFKrsrs%3D 21612466
-
Lowy F (2011) How Staphylococcus aureus adapts to its host. N Engl J Med 364:1987-1990
-
(2011)
N Engl J Med
, vol.364
, pp. 1987-1990
-
-
Lowy, F.1
-
52
-
-
36849071439
-
SAMMD: Staphylococcus aureus microarray meta-database
-
Nagarajan V, Elasri MO (2007) SAMMD: staphylococcus aureus microarray meta-database. BMC Genome 8:35-359
-
(2007)
BMC Genome
, vol.8
, pp. 35-359
-
-
Nagarajan, V.1
Elasri, M.O.2
-
53
-
-
84896964486
-
A novel multi-epitope peptide vaccine against cancer: An in silico approach
-
1:CAS:528:DC%2BC2cXltl2ntbo%3D 24512916
-
Nezafat N, Ghasemi Y, Javadi G, Khoshnoud MJ, Omidinia E (2014) A novel multi-epitope peptide vaccine against cancer: an in silico approach. J Theor Biol 349:121-134
-
(2014)
J Theor Biol
, vol.349
, pp. 121-134
-
-
Nezafat, N.1
Ghasemi, Y.2
Javadi, G.3
Khoshnoud, M.J.4
Omidinia, E.5
-
54
-
-
84872181103
-
SyntTax: A web server linking synteny to prokaryotic taxonomy Bmc
-
3571937 23323735
-
Oberto J (2013) SyntTax: a web server linking synteny to prokaryotic taxonomy Bmc. Bioinformatics 14:4
-
(2013)
Bioinformatics
, vol.14
, pp. 4
-
-
Oberto, J.1
-
55
-
-
0023055775
-
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: Correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites
-
1:CAS:528:DyaL28XlsFWjtb4%3D 2430611
-
Parker J, Guo D, Hodges R (1986) New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry 25:5425-5432
-
(1986)
Biochemistry
, vol.25
, pp. 5425-5432
-
-
Parker, J.1
Guo, D.2
Hodges, R.3
-
56
-
-
84875073951
-
Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes
-
3668253 23506117
-
Perry AJ, Ho BK (2013) Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes. Source Code Biol Med 8:9
-
(2013)
Source Code Biol Med
, vol.8
, pp. 9
-
-
Perry, A.J.1
Ho, B.K.2
-
57
-
-
84870367328
-
Staphylococcus aureus adherence to Candida albicans hyphae is mediated by the hyphal adhesin Als3p
-
4083660 1:CAS:528:DC%2BC3sXhslGitrg%3D 22918893
-
Peters BM, Ovchinnikova ES, Krom BP, Schlecht LM, Zhou H, Hoyer LL, Busscher HJ, van der Mei HC, Jabra-Rizk MA, Shirtliff ME (2012) Staphylococcus aureus adherence to Candida albicans hyphae is mediated by the hyphal adhesin Als3p. Microbiology 158(Pt 12):2975-2986
-
(2012)
Microbiology
, vol.158
, pp. 2975-2986
-
-
Peters, B.M.1
Ovchinnikova, E.S.2
Krom, B.P.3
Schlecht, L.M.4
Zhou, H.5
Hoyer, L.L.6
Busscher, H.J.7
Van Der Mei, H.C.8
Jabra-Rizk, M.A.9
Shirtliff, M.E.10
-
58
-
-
84871621938
-
Epidemiology of methicillin-resistant Staphylococcus aureus carrying the novel mecC gene in Denmark corroborates a zoonotic reservoir with transmission to humans
-
1:CAS:528:DC%2BC3sXitlOm 23078039
-
Petersen A et al (2013) Epidemiology of methicillin-resistant Staphylococcus aureus carrying the novel mecC gene in Denmark corroborates a zoonotic reservoir with transmission to humans. Clin Microbiol Infect 19:E16-E22
-
(2013)
Clin Microbiol Infect
, vol.19
, pp. E16-E22
-
-
Petersen, A.1
-
59
-
-
84859424015
-
Is there a future for a Staphylococcus aureus vaccine?
-
1:CAS:528:DC%2BC38XktlChtrg%3D 22115633
-
Proctor RA (2012) Is there a future for a Staphylococcus aureus vaccine? Vaccine 30:2921-2927
-
(2012)
Vaccine
, vol.30
, pp. 2921-2927
-
-
Proctor, R.A.1
-
60
-
-
77954557401
-
In silico analysis of antibody triggering biofilm associated protein in Acinetobacter baumannii
-
1:CAS:528:DC%2BC3cXhtVansLrK 20600143
-
Rahbar MR, Rasooli I, Mousavi Gargari SL, Amani J, Fattahian Y (2010) In silico analysis of antibody triggering biofilm associated protein in Acinetobacter baumannii. J Theor Biol 266:275-290
-
(2010)
J Theor Biol
, vol.266
, pp. 275-290
-
-
Rahbar, M.R.1
Rasooli, I.2
Mousavi Gargari, S.L.3
Amani, J.4
Fattahian, Y.5
-
61
-
-
84959085197
-
Application of data mining in bioinformatics
-
ArXiv:12051125
-
Raza K (2012) Application of data mining in bioinformatics. arXiv preprint. ArXiv:12051125
-
(2012)
ArXiv Preprint
-
-
Raza, K.1
-
62
-
-
33645467362
-
Comparative proteome analysis of Staphylococcus aureus biofilm and planktonic cells and correlation with transcriptome profiling
-
1:CAS:528:DC%2BD28XjtlKmtrY%3D 16470655
-
Resch A, Leicht S, Saric M, Pásztor L, Jakob A, Götz F, Nordheim A (2006) Comparative proteome analysis of Staphylococcus aureus biofilm and planktonic cells and correlation with transcriptome profiling. Proteomics 6:1867-1877
-
(2006)
Proteomics
, vol.6
, pp. 1867-1877
-
-
Resch, A.1
Leicht, S.2
Saric, M.3
Pásztor, L.4
Jakob, A.5
Götz, F.6
Nordheim, A.7
-
63
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
2849174 1:CAS:528:DC%2BC3cXksVahs74%3D 20360767
-
Roy A, Kucukural A, Zhang Y (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5:725-738
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
64
-
-
84864460609
-
COFACTOR: An accurate comparative algorithm for structure-based protein function annotation
-
Roy A, Yang J, Zhang Y (2012) COFACTOR: an accurate comparative algorithm for structure-based protein function annotation. Nucleic acids Res. doi: 10.1093/nar/gks372
-
(2012)
Nucleic Acids Res
-
-
Roy, A.1
Yang, J.2
Zhang, Y.3
-
65
-
-
33747871140
-
AlgPred: Prediction of allergenic proteins and mapping of IgE epitopes
-
1538830 1:CAS:528:DC%2BD28Xps1yhtbk%3D 16844994
-
Saha S, Raghava G (2006) AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. Nucleic Acids Res 34:W202-W209
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W202-W209
-
-
Saha, S.1
Raghava, G.2
-
66
-
-
53849102169
-
Vaccination and passive immunisation against Staphylococcus aureus
-
1:CAS:528:DC%2BD1cXht1KmurjP 18757184
-
Schaffer AC, Lee JC (2008) Vaccination and passive immunisation against Staphylococcus aureus. Int J Antimicrob Agents 32:S71-S78
-
(2008)
Int J Antimicrob Agents
, vol.32
, pp. S71-S78
-
-
Schaffer, A.C.1
Lee, J.C.2
-
67
-
-
70449441216
-
Molecular characterization of a novel Staphylococcus aureus surface protein (SasC) involved in cell aggregation and biofilm accumulation
-
2761602 19851500
-
Schroeder K et al (2009) Molecular characterization of a novel Staphylococcus aureus surface protein (SasC) involved in cell aggregation and biofilm accumulation. PLoS One 4:e7567
-
(2009)
PLoS One
, vol.4
, pp. e7567
-
-
Schroeder, K.1
-
68
-
-
84897935824
-
Covering all the bases: Preclinical development of an effective Staphylococcus aureus vaccine
-
3970019 24715889
-
Scully IL, Liberator PA, Jansen KU, Anderson AS (2014) Covering all the bases: preclinical development of an effective Staphylococcus aureus vaccine. Front Immunol 5:109
-
(2014)
Front Immunol
, vol.5
, pp. 109
-
-
Scully, I.L.1
Liberator, P.A.2
Jansen, K.U.3
Anderson, A.S.4
-
69
-
-
33749247804
-
Mapping the pathways to staphylococcal pathogenesis by comparative secretomics
-
1594592 1:CAS:528:DC%2BD28XhtVOnsrfN 16959968
-
Sibbald M et al (2006) Mapping the pathways to staphylococcal pathogenesis by comparative secretomics. Microbiol Mol Biol Rev 70:755-788
-
(2006)
Microbiol Mol Biol Rev
, vol.70
, pp. 755-788
-
-
Sibbald, M.1
-
70
-
-
0035060659
-
Clumping factor a mediates binding of Staphylococcus aureus to human platelets
-
98267 1:CAS:528:DC%2BD3MXjtV2qs7w%3D 11292731
-
Siboo IR, Cheung AL, Bayer AS, Sullam PM (2001) Clumping factor a mediates binding of Staphylococcus aureus to human platelets. Infect Immun 69:3120-3127
-
(2001)
Infect Immun
, vol.69
, pp. 3120-3127
-
-
Siboo, I.R.1
Cheung, A.L.2
Bayer, A.S.3
Sullam, P.M.4
-
71
-
-
78049445937
-
Interaction of Candida albicans cell wall Als3 protein with Streptococcus gordonii SspB adhesin promotes development of mixed-species communities
-
2976310 1:CAS:528:DC%2BC3cXhsFSntb3J 20805332
-
Silverman RJ, Nobbs AH, Vickerman MM, Barbour ME, Jenkinson HF (2010) Interaction of Candida albicans cell wall Als3 protein with Streptococcus gordonii SspB adhesin promotes development of mixed-species communities. Infect Immun 78(11):4644-4652
-
(2010)
Infect Immun
, vol.78
, Issue.11
, pp. 4644-4652
-
-
Silverman, R.J.1
Nobbs, A.H.2
Vickerman, M.M.3
Barbour, M.E.4
Jenkinson, H.F.5
-
72
-
-
84857036923
-
Update on the prevention and control of community-acquired meticillin-resistant Staphylococcus aureus(CA-MRSA)
-
1:CAS:528:DC%2BC38Xit12is7w%3D 22226649
-
Skov R, Christiansen K, Dancer S, Daum R, Dryden M, Huang Y, Lowy F (2012) Update on the prevention and control of community-acquired meticillin-resistant Staphylococcus aureus(CA-MRSA). Int J Antimicrob Agents 39:193-200
-
(2012)
Int J Antimicrob Agents
, vol.39
, pp. 193-200
-
-
Skov, R.1
Christiansen, K.2
Dancer, S.3
Daum, R.4
Dryden, M.5
Huang, Y.6
Lowy, F.7
-
73
-
-
62449116083
-
Methicillin-resistant Staphylococcus aureus: A new zoonotic agent?
-
1:CAS:528:DC%2BD1MXivFSms7s%3D 19280131
-
Springer B et al (2009) Methicillin-resistant Staphylococcus aureus: a new zoonotic agent? Wien Klin Wochenschr 121:86-90
-
(2009)
Wien Klin Wochenschr
, vol.121
, pp. 86-90
-
-
Springer, B.1
-
74
-
-
33750933334
-
Vaccine assembly from surface proteins of Staphylococcus aureus
-
1636558 1:CAS:528:DC%2BD28Xht1egu77M 17075065
-
Stranger-Jones YK, Bae T, Schneewind O (2006) Vaccine assembly from surface proteins of Staphylococcus aureus. Proc Natl Acad Sci 103:16942-16947
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 16942-16947
-
-
Stranger-Jones, Y.K.1
Bae, T.2
Schneewind, O.3
-
75
-
-
0038723307
-
Sip, an integrase protein with excision, circularization and integration activities, defines a new family of mobile Staphylococcus aureus pathogenicity islands
-
12823821
-
Úbeda C, Tormo M, Cucarella C, Trotonda P, Foster TJ, Lasa Í, Penadés JR (2003) Sip, an integrase protein with excision, circularization and integration activities, defines a new family of mobile Staphylococcus aureus pathogenicity islands. Mol Microbiol 49:193-210
-
(2003)
Mol Microbiol
, vol.49
, pp. 193-210
-
-
Úbeda, C.1
Tormo, M.2
Cucarella, C.3
Trotonda, P.4
Foster, T.J.5
Lasa, Í.6
Penadés, J.R.7
-
76
-
-
28044446133
-
The role of nasal carriage in Staphylococcus aureus infections
-
16310147
-
Wertheim HF, Melles DC, Vos MC, van Leeuwen W, van Belkum A, Verbrugh HA, Nouwen JL (2005) The role of nasal carriage in Staphylococcus aureus infections. Lancet Infect Dis 5:751-762
-
(2005)
Lancet Infect Dis
, vol.5
, pp. 751-762
-
-
Wertheim, H.F.1
Melles, D.C.2
Vos, M.C.3
Van Leeuwen, W.4
Van Belkum, A.5
Verbrugh, H.A.6
Nouwen, J.L.7
-
77
-
-
84937980732
-
In silico evaluation of different signal peptides for the secretory production of human growth hormone in E. Coli
-
Zamani M, Nezafat N, Negahdaripour M, Dabbagh F, Ghasemi Y (2015) In silico evaluation of different signal peptides for the secretory production of human growth hormone in E. coli. Int J Pept Res Ther 2015:1-8
-
(2015)
Int J Pept Res Ther
, vol.2015
, pp. 1-8
-
-
Zamani, M.1
Nezafat, N.2
Negahdaripour, M.3
Dabbagh, F.4
Ghasemi, Y.5
-
78
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinform 9:40
-
(2008)
BMC Bioinform
, vol.9
, pp. 40
-
-
Zhang, Y.1
|