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Volumn 2, Issue 3, 2016, Pages

Origins of pandemic Vibrio cholerae from environmental gene pools

Author keywords

[No Author keywords available]

Indexed keywords

VIRULENCE FACTOR;

EID: 85006736346     PISSN: None     EISSN: 20585276     Source Type: Journal    
DOI: 10.1038/nmicrobiol.2016.240     Document Type: Article
Times cited : (36)

References (43)
  • 1
    • 84958234886 scopus 로고    scopus 로고
    • 'Add, stir and reduce': Yersinia spp. As model bacteria for pathogen evolution
    • McNally, A., Thomson, N. R., Reuter, S. & Wren, B. W. 'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution. Nat. Rev. Microbiol. 14, 177-190 (2016).
    • (2016) Nat. Rev. Microbiol. , vol.14 , pp. 177-190
    • McNally, A.1    Thomson, N.R.2    Reuter, S.3    Wren, B.W.4
  • 2
    • 79955559191 scopus 로고    scopus 로고
    • Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
    • Luo, C. et al. Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species. Proc. Natl Acad. Sci. USA 108, 7200-7205 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 7200-7205
    • Luo, C.1
  • 4
    • 0035843908 scopus 로고    scopus 로고
    • Genes lost and genes found: Evolution of bacterial pathogenesis and symbiosis
    • Ochman, H. Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis. Science 292, 1096-1099 (2001).
    • (2001) Science , vol.292 , pp. 1096-1099
    • Ochman, H.1
  • 5
    • 84962201580 scopus 로고    scopus 로고
    • How clonal are bacteria over time?
    • Shapiro, B. J. How clonal are bacteria over time? Curr. Opin. Microbiol. 31, 116-123 (2016).
    • (2016) Curr. Opin. Microbiol. , vol.31 , pp. 116-123
    • Shapiro, B.J.1
  • 6
    • 84930728804 scopus 로고    scopus 로고
    • Epidemic clones, oceanic gene pools, and eco-LD in the free living marine pathogen Vibrio parahaemolyticus
    • Cui, Y. et al. Epidemic clones, oceanic gene pools, and eco-LD in the free living marine pathogen Vibrio parahaemolyticus. Mol. Biol. Evol. 32, 1396-1410 (2015).
    • (2015) Mol. Biol. Evol. , vol.32 , pp. 1396-1410
    • Cui, Y.1
  • 7
    • 70349304423 scopus 로고    scopus 로고
    • Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
    • Chun, J. et al. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proc. Natl Acad. Sci. USA 106, 15442-15447 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 15442-15447
    • Chun, J.1
  • 8
    • 84979037391 scopus 로고    scopus 로고
    • Sustained local diversity of Vibrio cholerae O1 biotypes in a previously cholera-free country
    • e00570-e005716
    • Boucher, Y. Sustained local diversity of Vibrio cholerae O1 biotypes in a previously cholera-free country. mBio 7, e00570-16 (2016).
    • (2016) MBio , vol.7
    • Boucher, Y.1
  • 9
    • 80053133499 scopus 로고    scopus 로고
    • Evidence for several waves of global transmission in the seventh cholera pandemic
    • Mutreja, A. et al. Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477, 462-465 (2011).
    • (2011) Nature , vol.477 , pp. 462-465
    • Mutreja, A.1
  • 10
    • 0039391898 scopus 로고
    • Use of phoA gene fusions to identify a pilus colonization factor coordinately regulated with cholera toxin
    • Taylor, R. K., Miller, V. L., Furlong, D. B. & Mekalanos, J. J. Use of phoA gene fusions to identify a pilus colonization factor coordinately regulated with cholera toxin. Proc. Natl Acad. Sci. USA 84, 2833-2837 (1987).
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 2833-2837
    • Taylor, R.K.1    Miller, V.L.2    Furlong, D.B.3    Mekalanos, J.J.4
  • 11
    • 0030057090 scopus 로고    scopus 로고
    • Lysogenic conversion by a filamentous phage encoding cholera toxin
    • Waldor, M. K. & Mekalanos, J. J. Lysogenic conversion by a filamentous phage encoding cholera toxin. Science 272, 1910-1914 (1996).
    • (1996) Science , vol.272 , pp. 1910-1914
    • Waldor, M.K.1    Mekalanos, J.J.2
  • 12
    • 0032539912 scopus 로고    scopus 로고
    • A Vibrio cholerae pathogenicity island associated with epidemic and pandemic strains
    • Karaolis, D. K. et al. A Vibrio cholerae pathogenicity island associated with epidemic and pandemic strains. Proc. Natl Acad. Sci. USA 95, 3134-3139 (1998).
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 3134-3139
    • Karaolis, D.K.1
  • 13
    • 1242274354 scopus 로고    scopus 로고
    • Genetic diversity and virulence potential of environmental Vibrio cholerae population in a cholera-endemic area
    • Faruque, S. M. et al. Genetic diversity and virulence potential of environmental Vibrio cholerae population in a cholera-endemic area. Proc. Natl Acad. Sci. USA 101, 2123-2128 (2004).
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 2123-2128
    • Faruque, S.M.1
  • 14
    • 0035378336 scopus 로고    scopus 로고
    • Genotypes associated with virulence in environmental isolates of Vibrio cholerae
    • Rivera, I. N., Chun, J., Huq, A., Sack, R. B. & Colwell, R. R. Genotypes associated with virulence in environmental isolates of Vibrio cholerae. Appl. Environ. Microbiol. 67, 2421-2429 (2001).
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2421-2429
    • Rivera, I.N.1    Chun, J.2    Huq, A.3    Sack, R.B.4    Colwell, R.R.5
  • 15
    • 84869882769 scopus 로고    scopus 로고
    • Virulence genes and pathogenicity islands in environmental Vibrio strains non-pathogenic to humans
    • Gennari, M., Ghidini, V. & Lleo, M. M. Virulence genes and pathogenicity islands in environmental Vibrio strains non-pathogenic to humans. FEMS Microbiol. Ecol. 82, 563-573 (2012).
    • (2012) FEMS Microbiol. Ecol. , vol.82 , pp. 563-573
    • Gennari, M.1    Ghidini, V.2    Lleo, M.M.3
  • 16
    • 20044388551 scopus 로고    scopus 로고
    • Genomic characterization of non-O1, non-O139 Vibrio cholerae reveals genes for a type III secretion system
    • Dziejman, M. et al. Genomic characterization of non-O1, non-O139 Vibrio cholerae reveals genes for a type III secretion system. Proc. Natl Acad. Sci. USA 102, 3465-3470 (2005).
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 3465-3470
    • Dziejman, M.1
  • 17
    • 83155185442 scopus 로고    scopus 로고
    • Ecology and genetic structure of a northern temperate Vibrio cholerae population related to toxigenic isolates
    • Schuster, B. M. et al. Ecology and genetic structure of a northern temperate Vibrio cholerae population related to toxigenic isolates. Appl. Environ. Microbiol. 77, 7568-7575 (2011).
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 7568-7575
    • Schuster, B.M.1
  • 18
    • 85015984197 scopus 로고    scopus 로고
    • The dynamics of genetic interactions between Vibrio metoecus and Vibrio cholerae, two close relatives co-occurring in the environment
    • Orata, F. D. et al. The dynamics of genetic interactions between Vibrio metoecus and Vibrio cholerae, two close relatives co-occurring in the environment. Genome Biol. Evol. 7, 2941-2954 (2015).
    • (2015) Genome Biol. Evol. , vol.7 , pp. 2941-2954
    • Orata, F.D.1
  • 19
    • 79551493539 scopus 로고    scopus 로고
    • Recombination shapes the structure of an environmental Vibrio cholerae population
    • Keymer, D. P. & Boehm, A. B. Recombination shapes the structure of an environmental Vibrio cholerae population. Appl. Environ. Microbiol. 77, 537-544 (2011).
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 537-544
    • Keymer, D.P.1    Boehm, A.B.2
  • 20
    • 0033970188 scopus 로고    scopus 로고
    • The virulence regulatory protein ToxR mediates enhanced bile resistance in Vibrio cholerae and other pathogenic Vibrio species
    • Provenzano, D., Schuhmacher, D. A., Barker, J. L. & Klose, K. E. The virulence regulatory protein ToxR mediates enhanced bile resistance in Vibrio cholerae and other pathogenic Vibrio species. Infect. Immun. 68, 1491-1497 (2000).
    • (2000) Infect. Immun. , vol.68 , pp. 1491-1497
    • Provenzano, D.1    Schuhmacher, D.A.2    Barker, J.L.3    Klose, K.E.4
  • 21
    • 2542610001 scopus 로고    scopus 로고
    • The Vibrio cholerae ToxR-regulated porin OmpU confers resistance to antimicrobial peptides
    • Mathur, J. & Waldor, M. K. The Vibrio cholerae ToxR-regulated porin OmpU confers resistance to antimicrobial peptides. Infect. Immun. 72, 3577-3583 (2004).
    • (2004) Infect. Immun. , vol.72 , pp. 3577-3583
    • Mathur, J.1    Waldor, M.K.2
  • 22
    • 84930328219 scopus 로고    scopus 로고
    • Intestinal colonization dynamics of Vibrio cholerae
    • Almagro-Moreno, S., Pruss, K. & Taylor, R. K. Intestinal colonization dynamics of Vibrio cholerae. PLoS Pathogens 11, e1004787 (2015).
    • (2015) PLoS Pathogens , vol.11 , pp. e1004787
    • Almagro-Moreno, S.1    Pruss, K.2    Taylor, R.K.3
  • 23
    • 0035045057 scopus 로고    scopus 로고
    • The ToxR-mediated organic acid tolerance response of Vibrio cholerae requires OmpU
    • Merrell, D. S., Bailey, C., Kaper, J. B. & Camilli, A. The ToxR-mediated organic acid tolerance response of Vibrio cholerae requires OmpU. J. Bacteriol. 183, 2746-2754 (2001).
    • (2001) J. Bacteriol. , vol.183 , pp. 2746-2754
    • Merrell, D.S.1    Bailey, C.2    Kaper, J.B.3    Camilli, A.4
  • 24
    • 0032723826 scopus 로고    scopus 로고
    • Steps in the development of a Vibrio cholerae El Tor biofilm
    • Watnick, P. I. & Kolter, R. Steps in the development of a Vibrio cholerae El Tor biofilm. Mol. Microbiol. 34, 586-595 (1999).
    • (1999) Mol. Microbiol. , vol.34 , pp. 586-595
    • Watnick, P.I.1    Kolter, R.2
  • 25
    • 84855811375 scopus 로고    scopus 로고
    • Toxr of Vibrio cholerae affects biofilm, rugosity and survival with Acanthamoeba castellanii
    • Valeru, S. P., Wai, S. N., Saeed, A., Sandström, G. & Abd, H. Toxr of Vibrio cholerae affects biofilm, rugosity and survival with Acanthamoeba castellanii. BMC Res. Notes 5, 33 (2012).
    • (2012) BMC Res. Notes , vol.5 , pp. 33
    • Valeru, S.P.1    Wai, S.N.2    Saeed, A.3    Sandström, G.4    Abd, H.5
  • 26
    • 0033616585 scopus 로고    scopus 로고
    • Vibrio cholerae O1 El Tor: Identification of a gene cluster required for the rugose colony type, exopolysaccharide production, chlorine resistance, and biofilm formation
    • Yildiz, F. H. & Schoolnik, G. K. Vibrio cholerae O1 El Tor: identification of a gene cluster required for the rugose colony type, exopolysaccharide production, chlorine resistance, and biofilm formation. Proc. Natl Acad. Sci. USA 96, 4028-4033 (1999).
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 4028-4033
    • Yildiz, F.H.1    Schoolnik, G.K.2
  • 27
    • 33749260708 scopus 로고    scopus 로고
    • Vibrio cholerae virulence regulatorcoordinated evasion of host immunity
    • Hsiao, A., Liu, Z., Joelsson, A. & Zhu, J. Vibrio cholerae virulence regulatorcoordinated evasion of host immunity. Proc. Natl Acad. Sci. USA 103, 14542-14547 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 14542-14547
    • Hsiao, A.1    Liu, Z.2    Joelsson, A.3    Zhu, J.4
  • 28
    • 84946831191 scopus 로고    scopus 로고
    • The out-of - The-delta hypothesis: Dense human populations in low-lying river deltas served as agents for the evolution of a deadly pathogen
    • Boucher, Y., Orata, F. D. & Alam, M. The out-of-the-delta hypothesis: dense human populations in low-lying river deltas served as agents for the evolution of a deadly pathogen. Front. Microbiol. 6, 1120 (2015).
    • (2015) Front. Microbiol. , vol.6 , pp. 1120
    • Boucher, Y.1    Orata, F.D.2    Alam, M.3
  • 29
    • 84872553569 scopus 로고    scopus 로고
    • Sympatric speciation: When is it possible in bacteria?
    • Friedman, J., Alm, E. J. & Shapiro, B. J. Sympatric speciation: when is it possible in bacteria? PLoS ONE 8, e53539 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e53539
    • Friedman, J.1    Alm, E.J.2    Shapiro, B.J.3
  • 30
    • 84925631043 scopus 로고    scopus 로고
    • The advent of genome-wide association studies for bacteria
    • Chen, P. E. & Shapiro, B. J. The advent of genome-wide association studies for bacteria. Curr. Opin. Microbiol. 25, 17-24 (2015).
    • (2015) Curr. Opin. Microbiol. , vol.25 , pp. 17-24
    • Chen, P.E.1    Shapiro, B.J.2
  • 31
    • 0036708322 scopus 로고    scopus 로고
    • New variants of Vibrio cholerae O1 biotype El Tor with attributes of the classical biotype from hospitalized patients with acute diarrhea in Bangladesh
    • Nair, G. B. et al. New variants of Vibrio cholerae O1 biotype El Tor with attributes of the classical biotype from hospitalized patients with acute diarrhea in Bangladesh. J. Clin. Microbiol. 40, 3296-3299 (2002).
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 3296-3299
    • Nair, G.B.1
  • 32
    • 80355137274 scopus 로고    scopus 로고
    • Characterization of Vibrio cholerae O1 El Tor biotype variant clinical isolates from Bangladesh and Haiti, including a molecular genetic analysis of virulence genes
    • Son, M. S., Megli, C. J., Kovacikova, G., Qadri, F. & Taylor, R. K. Characterization of Vibrio cholerae O1 El Tor biotype variant clinical isolates from Bangladesh and Haiti, including a molecular genetic analysis of virulence genes. J. Clin. Microbiol. 49, 3739-3749 (2011).
    • (2011) J. Clin. Microbiol. , vol.49 , pp. 3739-3749
    • Son, M.S.1    Megli, C.J.2    Kovacikova, G.3    Qadri, F.4    Taylor, R.K.5
  • 33
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 35
    • 79551599525 scopus 로고    scopus 로고
    • Mugsy: Fast multiple alignment of closely related whole genomes
    • Samuel, V & Angiuoli, S. L. S. Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27, 334-342 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 334-342
    • Samuel, V.1    Angiuoli, S.L.S.2
  • 36
    • 40549120596 scopus 로고    scopus 로고
    • The RAST server: Rapid annotations using subsystems technology
    • Aziz, R. K. et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9, 75 (2008).
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1
  • 37
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li, L., Stoeckert, C. J. & Roos, D. S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003).
    • (2003) Genome Res. , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 38
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 39
    • 77949718257 scopus 로고    scopus 로고
    • Fasttree 2-approximately maximumlikelihood trees for large alignments
    • Price, M. N., Dehal, P. S. & Arkin, A. P. Fasttree 2-approximately maximumlikelihood trees for large alignments. PLoS ONE 5, e9490 (2010).
    • (2010) PLoS ONE , vol.5 , pp. e9490
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 40
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net: An agglomerative method for the construction of phylogenetic networks
    • Bryant, D. & Moulton, V. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol. Biol. Evol. 21, 255-265 (2004).
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 41
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J. H. & Kreitman, M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351, 652-654 (1991).
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 42
    • 33847781444 scopus 로고    scopus 로고
    • Adaptive genic evolution in the Drosophila genomes
    • Shapiro, J. A. et al. Adaptive genic evolution in the Drosophila genomes. Proc. Natl Acad. Sci. USA 104, 2271-2276 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 2271-2276
    • Shapiro, J.A.1
  • 43
    • 0029926274 scopus 로고    scopus 로고
    • Positive selection vectors for allelic exchange
    • Skorupski, K. & Taylor, R. K. Positive selection vectors for allelic exchange. Gene 169, 47-52 (1996).
    • (1996) Gene , vol.169 , pp. 47-52
    • Skorupski, K.1    Taylor, R.K.2


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