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Volumn 5, Issue 12, 2016, Pages 1355-1361

CRISPR/Cas9-Based Efficient Genome Editing in Clostridium ljungdahlii, an Autotrophic Gas-Fermenting Bacterium

Author keywords

autotrophic bacterium; Clostridium ljungdahlii; CRISPR Cas9; gas fermentation; rapid genome editing; strong promoters

Indexed keywords

ALCOHOL; BETA GALACTOSIDASE; GENOMIC DNA; GUIDE RNA; BACTERIAL PROTEIN;

EID: 85006485809     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/acssynbio.6b00044     Document Type: Article
Times cited : (164)

References (30)
  • 1
    • 84878655703 scopus 로고    scopus 로고
    • Biological conversion of carbon dioxide and hydrogen into liquid fuels and industrial chemicals
    • Hawkins, A. S., McTernan, P. M., Lian, H., Kelly, R. M., and Adams, M. W. ( 2013 ) Biological conversion of carbon dioxide and hydrogen into liquid fuels and industrial chemicals Curr. Opin. Biotechnol. 24, 376-384 10.1016/j.copbio.2013.02.017
    • (2013) Curr. Opin. Biotechnol. , vol.24 , pp. 376-384
    • Hawkins, A.S.1    McTernan, P.M.2    Lian, H.3    Kelly, R.M.4    Adams, M.W.5
  • 2
    • 79958010534 scopus 로고    scopus 로고
    • Microbial production of ethanol from carbon monoxide
    • Wilkins, M. R. and Atiyeh, H. K. ( 2011 ) Microbial production of ethanol from carbon monoxide Curr. Opin. Biotechnol. 22, 326-330 10.1016/j.copbio.2011.03.005
    • (2011) Curr. Opin. Biotechnol. , vol.22 , pp. 326-330
    • Wilkins, M.R.1    Atiyeh, H.K.2
  • 3
    • 79957995288 scopus 로고    scopus 로고
    • Fermentative production of ethanol from carbon monoxide
    • Köpke, M., Mihalcea, C., Bromley, J. C., and Simpson, S. D. ( 2011 ) Fermentative production of ethanol from carbon monoxide Curr. Opin. Biotechnol. 22, 320-325 10.1016/j.copbio.2011.01.005
    • (2011) Curr. Opin. Biotechnol. , vol.22 , pp. 320-325
    • Köpke, M.1    Mihalcea, C.2    Bromley, J.C.3    Simpson, S.D.4
  • 4
    • 84862010951 scopus 로고    scopus 로고
    • Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications
    • Tracy, B. P., Jones, S. W., Fast, A. G., Indurthi, D. C., and Papoutsakis, E. T. ( 2012 ) Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications Curr. Opin. Biotechnol. 23, 364-381 10.1016/j.copbio.2011.10.008
    • (2012) Curr. Opin. Biotechnol. , vol.23 , pp. 364-381
    • Tracy, B.P.1    Jones, S.W.2    Fast, A.G.3    Indurthi, D.C.4    Papoutsakis, E.T.5
  • 7
    • 84908433337 scopus 로고    scopus 로고
    • Converting carbon dioxide to butyrate with an engineered strain of Clostridium ljungdahlii
    • Ueki, T., Nevin, K. P., Woodard, T. L., and Lovley, D. R. ( 2014 ) Converting carbon dioxide to butyrate with an engineered strain of Clostridium ljungdahlii mBio 5, e01636 10.1128/mBio.01636-14
    • (2014) mBio , vol.5 , pp. e01636
    • Ueki, T.1    Nevin, K.P.2    Woodard, T.L.3    Lovley, D.R.4
  • 8
    • 84874738185 scopus 로고    scopus 로고
    • A genetic system for Clostridium ljungdahlii: a chassis for autotrophic production of biocommodities and a model homoacetogen
    • Leang, C., Ueki, T., Nevin, K. P., and Lovley, D. R. ( 2013 ) A genetic system for Clostridium ljungdahlii: a chassis for autotrophic production of biocommodities and a model homoacetogen Appl. Environ. Microbiol. 79, 1102-1109 10.1128/AEM.02891-12
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 1102-1109
    • Leang, C.1    Ueki, T.2    Nevin, K.P.3    Lovley, D.R.4
  • 10
    • 84895962809 scopus 로고    scopus 로고
    • Application of TALEs, CRISPR/Cas and sRNAs as trans-acting regulators in prokaryotes
    • Copeland, M. F., Politz, M. C., and Pfleger, B. F. ( 2014 ) Application of TALEs, CRISPR/Cas and sRNAs as trans-acting regulators in prokaryotes Curr. Opin. Biotechnol. 29, 46-54 10.1016/j.copbio.2014.02.010
    • (2014) Curr. Opin. Biotechnol. , vol.29 , pp. 46-54
    • Copeland, M.F.1    Politz, M.C.2    Pfleger, B.F.3
  • 11
    • 84896304359 scopus 로고    scopus 로고
    • Gene regulation by engineered CRISPR-Cas systems
    • Fineran, P. C. and Dy, R. L. ( 2014 ) Gene regulation by engineered CRISPR-Cas systems Curr. Opin. Microbiol. 18, 83-89 10.1016/j.mib.2014.02.007
    • (2014) Curr. Opin. Microbiol. , vol.18 , pp. 83-89
    • Fineran, P.C.1    Dy, R.L.2
  • 12
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J. A., and Charpentier, E. ( 2012 ) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity Science 337, 816-821 10.1126/science.1225829
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 13
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR-Cas systems
    • Jiang, W., Bikard, D., Cox, D., Zhang, F., and Marraffini, L. A. ( 2013 ) RNA-guided editing of bacterial genomes using CRISPR-Cas systems Nat. Biotechnol. 31, 233-239 10.1038/nbt.2508
    • (2013) Nat. Biotechnol. , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 15
    • 84876575031 scopus 로고    scopus 로고
    • Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems
    • DiCarlo, J. E., Norville, J. E., Mali, P., Rios, X., Aach, J., and Church, G. M. ( 2013 ) Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems Nucleic Acids Res. 41, 4336-4343 10.1093/nar/gkt135
    • (2013) Nucleic Acids Res. , vol.41 , pp. 4336-4343
    • DiCarlo, J.E.1    Norville, J.E.2    Mali, P.3    Rios, X.4    Aach, J.5    Church, G.M.6
  • 17
    • 84924425397 scopus 로고    scopus 로고
    • Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system
    • Wang, Y., Zhang, Z. T., Seo, S. O., Choi, K., Lu, T., Jin, Y. S., and Blaschek, H. P. ( 2015 ) Markerless chromosomal gene deletion in Clostridium beijerinckii using CRISPR/Cas9 system J. Biotechnol. 200, 1-5 10.1016/j.jbiotec.2015.02.005
    • (2015) J. Biotechnol. , vol.200 , pp. 1-5
    • Wang, Y.1    Zhang, Z.T.2    Seo, S.O.3    Choi, K.4    Lu, T.5    Jin, Y.S.6    Blaschek, H.P.7
  • 19
    • 79955611428 scopus 로고    scopus 로고
    • Metabolic engineering of Clostridium cellulolyticum for production of isobutanol from cellulose
    • Higashide, W., Li, Y., Yang, Y., and Liao, J. C. ( 2011 ) Metabolic engineering of Clostridium cellulolyticum for production of isobutanol from cellulose Appl. Environ. Microbiol. 77, 2727-2733 10.1128/AEM.02454-10
    • (2011) Appl. Environ. Microbiol. , vol.77 , pp. 2727-2733
    • Higashide, W.1    Li, Y.2    Yang, Y.3    Liao, J.C.4
  • 20
    • 84855266078 scopus 로고    scopus 로고
    • Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations
    • Li, Y., Tschaplinski, T. J., Engle, N. L., Hamilton, C. Y., Rodriguez, M., Jr., Liao, J. C., Schadt, C. W., Guss, A. M., Yang, Y., and Graham, D. E. ( 2012 ) Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations Biotechnol. Biofuels 5, 2 10.1186/1754-6834-5-2
    • (2012) Biotechnol. Biofuels , vol.5 , pp. 2
    • Li, Y.1    Tschaplinski, T.J.2    Engle, N.L.3    Hamilton, C.Y.4    Rodriguez, M.5    Liao, J.C.6    Schadt, C.W.7    Guss, A.M.8    Yang, Y.9    Graham, D.E.10
  • 21
    • 84865613048 scopus 로고    scopus 로고
    • Metabolic engineering of d-xylose pathway in Clostridium beijerinckii to optimize solvent production from xylose mother liquid
    • Xiao, H., Li, Z., Jiang, Y., Yang, Y., Jiang, W., Gu, Y., and Yang, S. ( 2012 ) Metabolic engineering of d-xylose pathway in Clostridium beijerinckii to optimize solvent production from xylose mother liquid Metab. Eng. 14, 569-578 10.1016/j.ymben.2012.05.003
    • (2012) Metab. Eng. , vol.14 , pp. 569-578
    • Xiao, H.1    Li, Z.2    Jiang, Y.3    Yang, Y.4    Jiang, W.5    Gu, Y.6    Yang, S.7
  • 22
    • 80053120527 scopus 로고    scopus 로고
    • Optimization of butanol production from tropical maize stalk juice by fermentation with Clostridium beijerinckii NCIMB 8052
    • Wang, Y. and Blaschek, H. P. ( 2011 ) Optimization of butanol production from tropical maize stalk juice by fermentation with Clostridium beijerinckii NCIMB 8052 Bioresour. Technol. 102, 9985-9990 10.1016/j.biortech.2011.08.038
    • (2011) Bioresour. Technol. , vol.102 , pp. 9985-9990
    • Wang, Y.1    Blaschek, H.P.2
  • 23
    • 84876463447 scopus 로고    scopus 로고
    • Butanol production from acid hydrolyzed corn fiber with Clostridium beijerinckii mutant
    • Du, T. F., He, A. Y., Wu, H., Chen, J. N., Kong, X. P., Liu, J. L., Jiang, M., and Ouyang, P. K. ( 2013 ) Butanol production from acid hydrolyzed corn fiber with Clostridium beijerinckii mutant Bioresour. Technol. 135, 254-261 10.1016/j.biortech.2012.11.033
    • (2013) Bioresour. Technol. , vol.135 , pp. 254-261
    • Du, T.F.1    He, A.Y.2    Wu, H.3    Chen, J.N.4    Kong, X.P.5    Liu, J.L.6    Jiang, M.7    Ouyang, P.K.8
  • 24
    • 84925355124 scopus 로고    scopus 로고
    • Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system
    • Jiang, Y., Chen, B., Duan, C., Sun, B., Yang, J., and Yang, S. ( 2015 ) Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system Appl. Environ. Microbiol. 81, 2506-2514 10.1128/AEM.04023-14
    • (2015) Appl. Environ. Microbiol. , vol.81 , pp. 2506-2514
    • Jiang, Y.1    Chen, B.2    Duan, C.3    Sun, B.4    Yang, J.5    Yang, S.6
  • 25
    • 0041527233 scopus 로고    scopus 로고
    • Development of a sensitive gene expression reporter system and an inducible promoter-repressor system for Clostridium acetobutylicum
    • Girbal, L., Mortier-Barriere, I., Raynaud, F., Rouanet, C., Croux, C., and Soucaille, P. ( 2003 ) Development of a sensitive gene expression reporter system and an inducible promoter-repressor system for Clostridium acetobutylicum Appl. Environ. Microbiol. 69, 4985-4988 10.1128/AEM.69.8.4985-4988.2003
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4985-4988
    • Girbal, L.1    Mortier-Barriere, I.2    Raynaud, F.3    Rouanet, C.4    Croux, C.5    Soucaille, P.6
  • 26
    • 0032876348 scopus 로고    scopus 로고
    • Development and characterization of a gene expression reporter system for Clostridium acetobutylicum ATCC 824
    • Tummala, S. B., Welker, N. E., and Papoutsakis, E. T. ( 1999 ) Development and characterization of a gene expression reporter system for Clostridium acetobutylicum ATCC 824 Appl. Environ. Microbiol. 65, 3793-3799
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3793-3799
    • Tummala, S.B.1    Welker, N.E.2    Papoutsakis, E.T.3
  • 30
    • 84860362257 scopus 로고    scopus 로고
    • Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker
    • Heap, J. T., Ehsaan, M., Cooksley, C. M., Ng, Y. K., Cartman, S. T., Winzer, K., and Minton, N. P. ( 2012 ) Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker Nucleic Acids Res. 40, e59 10.1093/nar/gkr1321
    • (2012) Nucleic Acids Res. , vol.40 , pp. e59
    • Heap, J.T.1    Ehsaan, M.2    Cooksley, C.M.3    Ng, Y.K.4    Cartman, S.T.5    Winzer, K.6    Minton, N.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.