-
1
-
-
28544451327
-
Foundations for engineering biology
-
Endy, D. ( 2005 ) Foundations for engineering biology Nature 438, 449-53 10.1038/nature04342
-
(2005)
Nature
, vol.438
, pp. 449-453
-
-
Endy, D.1
-
2
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
Canton, B., Labno, A., and Endy, D. ( 2008 ) Refinement and standardization of synthetic biological parts and devices Nat. Biotechnol. 26, 787-93 10.1038/nbt1413
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
3
-
-
84863630261
-
Pathway engineering and synthetic biology using acetogens
-
Schiel-Bengelsdorf, B. and Dürre, P. ( 2012 ) Pathway engineering and synthetic biology using acetogens FEBS Lett. 586, 2191-8 10.1016/j.febslet.2012.04.043
-
(2012)
FEBS Lett.
, vol.586
, pp. 2191-2198
-
-
Schiel-Bengelsdorf, B.1
Dürre, P.2
-
4
-
-
84898874640
-
Biotechnological domestication of pseudomonads using synthetic biology
-
Nikel, P. I., Martínez-García, E., and de Lorenzo, V. ( 2014 ) Biotechnological domestication of pseudomonads using synthetic biology Nat. Rev. Microbiol. 12, 368-79 10.1038/nrmicro3253
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 368-379
-
-
Nikel, P.I.1
Martínez-García, E.2
De Lorenzo, V.3
-
5
-
-
84896120817
-
Biotechnological potential of the fungal CTG clade species in the synthetic biology era
-
Papon, N., Courdavault, V., and Clastre, M. ( 2014 ) Biotechnological potential of the fungal CTG clade species in the synthetic biology era Trends Biotechnol. 32, 167-8 10.1016/j.tibtech.2013.10.006
-
(2014)
Trends Biotechnol.
, vol.32
, pp. 167-168
-
-
Papon, N.1
Courdavault, V.2
Clastre, M.3
-
6
-
-
84929593888
-
Synthetic biology toolbox for controlling gene expression in the cyanobacterium Synechococcus sp. strain PCC 7002
-
Markley, A. L., Begemann, M. B., Clarke, R. E., Gordon, G. C., and Pfleger, B. F. ( 2015 ) Synthetic biology toolbox for controlling gene expression in the cyanobacterium Synechococcus sp. strain PCC 7002 ACS Synth. Biol. 4, 595-603 10.1021/sb500260k
-
(2015)
ACS Synth. Biol.
, vol.4
, pp. 595-603
-
-
Markley, A.L.1
Begemann, M.B.2
Clarke, R.E.3
Gordon, G.C.4
Pfleger, B.F.5
-
7
-
-
84938323503
-
Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota
-
Mimee, M., Tucker, A. C., Voigt, C. A., and Lu, T. K. ( 2015 ) Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota Cell Syst. 1, 62-71 10.1016/j.cels.2015.06.001
-
(2015)
Cell Syst.
, vol.1
, pp. 62-71
-
-
Mimee, M.1
Tucker, A.C.2
Voigt, C.A.3
Lu, T.K.4
-
9
-
-
67649111013
-
Thermophilic ethanologenesis: future prospects for second-generation bioethanol production
-
Taylor, M. P., Eley, K. L., Martin, S., Tuffin, M. I., Burton, S. G., and Cowan, D. A. ( 2009 ) Thermophilic ethanologenesis: future prospects for second-generation bioethanol production Trends Biotechnol. 27, 398-405 10.1016/j.tibtech.2009.03.006
-
(2009)
Trends Biotechnol.
, vol.27
, pp. 398-405
-
-
Taylor, M.P.1
Eley, K.L.2
Martin, S.3
Tuffin, M.I.4
Burton, S.G.5
Cowan, D.A.6
-
10
-
-
70450221933
-
Metabolic engineering of Geobacillus thermoglucosidasius for high yield ethanol production
-
Cripps, R. E., Eley, K., Leak, D. J., Rudd, B., Taylor, M., Todd, M., Boakes, S., Martin, S., and Atkinson, T. ( 2009 ) Metabolic engineering of Geobacillus thermoglucosidasius for high yield ethanol production Metab. Eng. 11, 398-408 10.1016/j.ymben.2009.08.005
-
(2009)
Metab. Eng.
, vol.11
, pp. 398-408
-
-
Cripps, R.E.1
Eley, K.2
Leak, D.J.3
Rudd, B.4
Taylor, M.5
Todd, M.6
Boakes, S.7
Martin, S.8
Atkinson, T.9
-
11
-
-
84894085130
-
Characterization of two novel plasmids from Geobacillus sp. 610 and 1121 strains
-
Kananavičiutė, R., Butaitė, E., and Citavičius, D. ( 2014 ) Characterization of two novel plasmids from Geobacillus sp. 610 and 1121 strains Plasmid 71, 23-31 10.1016/j.plasmid.2013.10.002
-
(2014)
Plasmid
, vol.71
, pp. 23-31
-
-
Kananavičiutė, R.1
Butaitė, E.2
Citavičius, D.3
-
12
-
-
84899555105
-
Isobutanol production at elevated temperatures in thermophilic Geobacillus thermoglucosidasius
-
Lin, P. P., Rabe, K. S., Takasumi, J. L., Kadisch, M., Arnold, F. H., and Liao, J. C. ( 2014 ) Isobutanol production at elevated temperatures in thermophilic Geobacillus thermoglucosidasius Metab. Eng. 24, 1-8 10.1016/j.ymben.2014.03.006
-
(2014)
Metab. Eng.
, vol.24
, pp. 1-8
-
-
Lin, P.P.1
Rabe, K.S.2
Takasumi, J.L.3
Kadisch, M.4
Arnold, F.H.5
Liao, J.C.6
-
13
-
-
44649096262
-
Development of a versatile shuttle vector for gene expression in Geobacillus spp
-
Taylor, M. P., Esteban, C. D., and Leak, D. J. ( 2008 ) Development of a versatile shuttle vector for gene expression in Geobacillus spp Plasmid 60, 45-52 10.1016/j.plasmid.2008.04.001
-
(2008)
Plasmid
, vol.60
, pp. 45-52
-
-
Taylor, M.P.1
Esteban, C.D.2
Leak, D.J.3
-
14
-
-
84866170627
-
Application of pheB as a reporter gene for Geobacillus spp., enabling qualitative colony screening and quantitative analysis of promoter strength
-
Bartosiak-Jentys, J., Eley, K., and Leak, D. J. ( 2012 ) Application of pheB as a reporter gene for Geobacillus spp., enabling qualitative colony screening and quantitative analysis of promoter strength Appl. Environ. Microbiol. 78, 5945-7 10.1128/AEM.07944-11
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 5945-5947
-
-
Bartosiak-Jentys, J.1
Eley, K.2
Leak, D.J.3
-
15
-
-
70349964350
-
Automated design of synthetic ribosome binding sites to control protein expression
-
Salis, H. M., Mirsky, E. A., and Voigt, C. A. ( 2009 ) Automated design of synthetic ribosome binding sites to control protein expression Nat. Biotechnol. 27, 946-50 10.1038/nbt.1568
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 946-950
-
-
Salis, H.M.1
Mirsky, E.A.2
Voigt, C.A.3
-
16
-
-
67349159856
-
A modular system for Clostridium shuttle plasmids
-
Heap, J. T., Pennington, O. J., Cartman, S. T., and Minton, N. P. ( 2009 ) A modular system for Clostridium shuttle plasmids J. Microbiol. Methods 78, 79-85 10.1016/j.mimet.2009.05.004
-
(2009)
J. Microbiol. Methods
, vol.78
, pp. 79-85
-
-
Heap, J.T.1
Pennington, O.J.2
Cartman, S.T.3
Minton, N.P.4
-
17
-
-
84876567509
-
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
-
Silva-Rocha, R., Martinez-Garcia, E., Calles, B., Chavarria, M., Arce-Rodriguez, A., de las Heras, A., Paez-Espino, A. D., Durante-Rodriguez, G., Kim, J., Nikel, P. I., Platero, R., and de Lorenzo, V. ( 2013 ) The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes Nucleic Acids Res. 41, D666-D675 10.1093/nar/gks1119
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D666-D675
-
-
Silva-Rocha, R.1
Martinez-Garcia, E.2
Calles, B.3
Chavarria, M.4
Arce-Rodriguez, A.5
De Las Heras, A.6
Paez-Espino, A.D.7
Durante-Rodriguez, G.8
Kim, J.9
Nikel, P.I.10
Platero, R.11
De Lorenzo, V.12
-
18
-
-
84879806357
-
Modular system for assessment of glycosyl hydrolase secretion in Geobacillus thermoglucosidasius
-
Bartosiak-Jentys, J., Hussein, A. H., Lewis, C. J., and Leak, D. J. ( 2013 ) Modular system for assessment of glycosyl hydrolase secretion in Geobacillus thermoglucosidasius Microbiology 159, 1267-75 10.1099/mic.0.066332-0
-
(2013)
Microbiology
, vol.159
, pp. 1267-1275
-
-
Bartosiak-Jentys, J.1
Hussein, A.H.2
Lewis, C.J.3
Leak, D.J.4
-
19
-
-
0025093952
-
Increased efficiency of transformation ofBacillus stearothermophilus by a plasmid carrying a thermostable kanamycin resistance marker
-
Liao, H. H. and Kanikula, A. M. ( 1990 ) Increased efficiency of transformation ofBacillus stearothermophilus by a plasmid carrying a thermostable kanamycin resistance marker Curr. Microbiol. 21, 301-306 10.1007/BF02092095
-
(1990)
Curr. Microbiol.
, vol.21
, pp. 301-306
-
-
Liao, H.H.1
Kanikula, A.M.2
-
20
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron, C., Vieira, J., and Messing, J. ( 1985 ) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors Gene 33, 103-19 10.1016/0378-1119(85)90120-9
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
21
-
-
0022599340
-
The nucleotide sequence of pUB110: some salient features in relation to replication and its regulation
-
McKenzie, T., Hoshino, T., Tanaka, T., and Sueoka, N. ( 1986 ) The nucleotide sequence of pUB110: some salient features in relation to replication and its regulation Plasmid 15, 93-103 10.1016/0147-619X(86)90046-6
-
(1986)
Plasmid
, vol.15
, pp. 93-103
-
-
McKenzie, T.1
Hoshino, T.2
Tanaka, T.3
Sueoka, N.4
-
22
-
-
0020266466
-
Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance
-
Horinouchi, S. and Weisblum, B. ( 1982 ) Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance J. Bacteriol. 150, 815-25
-
(1982)
J. Bacteriol.
, vol.150
, pp. 815-825
-
-
Horinouchi, S.1
Weisblum, B.2
-
23
-
-
84930757423
-
Thermoadaptation-directed evolution of chloramphenicol acetyltransferase in an error-prone thermophile using improved procedures
-
Kobayashi, J., Furukawa, M., Ohshiro, T., and Suzuki, H. ( 2015 ) Thermoadaptation-directed evolution of chloramphenicol acetyltransferase in an error-prone thermophile using improved procedures Appl. Microbiol. Biotechnol. 99, 5563-72 10.1007/s00253-015-6522-4
-
(2015)
Appl. Microbiol. Biotechnol.
, vol.99
, pp. 5563-5572
-
-
Kobayashi, J.1
Furukawa, M.2
Ohshiro, T.3
Suzuki, H.4
-
24
-
-
0024311496
-
Protoplast transformation of Bacillus stearothermophilus NUB36 by plasmid DNA
-
Wu, L. J. and Welker, N. E. ( 1989 ) Protoplast transformation of Bacillus stearothermophilus NUB36 by plasmid DNA Microbiology 135, 1315-24 10.1099/00221287-135-5-1315
-
(1989)
Microbiology
, vol.135
, pp. 1315-1324
-
-
Wu, L.J.1
Welker, N.E.2
-
25
-
-
0029074188
-
Transformation of Escherichia coli with large DNA molecules by electroporation
-
Sheng, Y., Mancino, V., and Birren, B. ( 1995 ) Transformation of Escherichia coli with large DNA molecules by electroporation Nucleic Acids Res. 23, 1990-1996 10.1093/nar/23.11.1990
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 1990-1996
-
-
Sheng, Y.1
Mancino, V.2
Birren, B.3
-
26
-
-
0035444240
-
Prediction of rho-independent transcriptional terminators in Escherichia coli
-
Lesnik, E. A., Sampath, R., Levene, H. B., Henderson, T. J., McNeil, J. A., and Ecker, D. J. ( 2001 ) Prediction of rho-independent transcriptional terminators in Escherichia coli Nucleic Acids Res. 29, 3583-94 10.1093/nar/29.17.3583
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 3583-3594
-
-
Lesnik, E.A.1
Sampath, R.2
Levene, H.B.3
Henderson, T.J.4
McNeil, J.A.5
Ecker, D.J.6
-
27
-
-
30544433196
-
Engineering and characterization of a superfolder green fluorescent protein
-
Pédelacq, J.-D., Cabantous, S., Tran, T., Terwilliger, T. C., and Waldo, G. S. ( 2006 ) Engineering and characterization of a superfolder green fluorescent protein Nat. Biotechnol. 24, 79-88 10.1038/nbt1172
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 79-88
-
-
Pédelacq, J.-D.1
Cabantous, S.2
Tran, T.3
Terwilliger, T.C.4
Waldo, G.S.5
-
28
-
-
38549111794
-
Expression and use of superfolder green fluorescent protein at high temperatures in vivo: a tool to study extreme thermophile biology
-
Cava, F., de Pedro, M. A., Blas-Galindo, E., Waldo, G. S., Westblade, L. F., and Berenguer, J. ( 2008 ) Expression and use of superfolder green fluorescent protein at high temperatures in vivo: a tool to study extreme thermophile biology Environ. Microbiol. 10, 605-13 10.1111/j.1462-2920.2007.01482.x
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 605-613
-
-
Cava, F.1
De Pedro, M.A.2
Blas-Galindo, E.3
Waldo, G.S.4
Westblade, L.F.5
Berenguer, J.6
-
29
-
-
11144267737
-
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
-
Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B. N. G., Palmer, A. E., and Tsien, R. Y. ( 2004 ) Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein Nat. Biotechnol. 22, 1567-72 10.1038/nbt1037
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1567-1572
-
-
Shaner, N.C.1
Campbell, R.E.2
Steinbach, P.A.3
Giepmans, B.N.G.4
Palmer, A.E.5
Tsien, R.Y.6
-
30
-
-
85006389004
-
Geobacillus thermoglucosidasius C56-YS93, complete genome - Nucleotide - NCBI
-
Lucas, S., Han, J., Lapidus, A., Cheng, J.-F., Goodwin, L., Pitluck, S., Peters, L., Teshima, H., Detter, J. C., Han, C., Tapia, R., Land, M., Hauser, L., Kyrpides, N., Ivanova, N., Ovchinnikova, G., Pagani, I., Brumm, P., Kourtz, L., Mead, D., and Woyke, T. ( 2011 ) Geobacillus thermoglucosidasius C56-YS93, complete genome-Nucleotide-NCBI. NCBI Nucletide Database.
-
(2011)
NCBI Nucletide Database
-
-
Lucas, S.1
Han, J.2
Lapidus, A.3
Cheng, J.-F.4
Goodwin, L.5
Pitluck, S.6
Peters, L.7
Teshima, H.8
Detter, J.C.9
Han, C.10
Tapia, R.11
Land, M.12
Hauser, L.13
Kyrpides, N.14
Ivanova, N.15
Ovchinnikova, G.16
Pagani, I.17
Brumm, P.18
Kourtz, L.19
Mead, D.20
Woyke, T.21
more..
-
31
-
-
84857683425
-
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis
-
Nicolas, P., Mäder, U., Dervyn, E., Rochat, T., Leduc, A., Pigeonneau, N., Bidnenko, E., Marchadier, E., Hoebeke, M., Aymerich, S., Becher, D., Bisicchia, P., Botella, E., Delumeau, O., Doherty, G., Denham, E. L., Fogg, M. J., Fromion, V., Goelzer, A., Hansen, A., Härtig, E., Harwood, C. R., Homuth, G., Jarmer, H., Jules, M., Klipp, E., Le Chat, L., Lecointe, F., Lewis, P., Liebermeister, W., March, A., Mars, R. A. T., Nannapaneni, P., Noone, D., Pohl, S., Rinn, B., Rügheimer, F., Sappa, P. K., Samson, F., Schaffer, M., Schwikowski, B., Steil, L., Stülke, J., Wiegert, T., Devine, K. M., Wilkinson, A. J., van Dijl, J. M., Hecker, M., Völker, U., Bessières, P., and Noirot, P. ( 2012 ) Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis Science 335, 1103-6 10.1126/science.1206848
-
(2012)
Science
, vol.335
, pp. 1103-1106
-
-
Nicolas, P.1
Mäder, U.2
Dervyn, E.3
Rochat, T.4
Leduc, A.5
Pigeonneau, N.6
Bidnenko, E.7
Marchadier, E.8
Hoebeke, M.9
Aymerich, S.10
Becher, D.11
Bisicchia, P.12
Botella, E.13
Delumeau, O.14
Doherty, G.15
Denham, E.L.16
Fogg, M.J.17
Fromion, V.18
Goelzer, A.19
Hansen, A.20
Härtig, E.21
Harwood, C.R.22
Homuth, G.23
Jarmer, H.24
Jules, M.25
Klipp, E.26
Le Chat, L.27
Lecointe, F.28
Lewis, P.29
Liebermeister, W.30
March, A.31
Mars, R.A.T.32
Nannapaneni, P.33
Noone, D.34
Pohl, S.35
Rinn, B.36
Rügheimer, F.37
Sappa, P.K.38
Samson, F.39
Schaffer, M.40
Schwikowski, B.41
Steil, L.42
Stülke, J.43
Wiegert, T.44
Devine, K.M.45
Wilkinson, A.J.46
Van Dijl, J.M.47
Hecker, M.48
Völker, U.49
Bessières, P.50
Noirot, P.51
more..
-
32
-
-
0032972099
-
High osmolarity improves the electro-transformation efficiency of the gram-positive bacteria Bacillus subtilis and Bacillus licheniformis
-
Xue, G.-P., Johnson, J. S., and Dalrymple, B. P. ( 1999 ) High osmolarity improves the electro-transformation efficiency of the gram-positive bacteria Bacillus subtilis and Bacillus licheniformis J. Microbiol. Methods 34, 183-191 10.1016/S0167-7012(98)00087-6
-
(1999)
J. Microbiol. Methods
, vol.34
, pp. 183-191
-
-
Xue, G.-P.1
Johnson, J.S.2
Dalrymple, B.P.3
-
33
-
-
33746745365
-
Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli
-
Lee, C., Kim, J., Shin, S. G., and Hwang, S. ( 2006 ) Absolute and relative QPCR quantification of plasmid copy number in Escherichia coli J. Biotechnol. 123, 273-80 10.1016/j.jbiotec.2005.11.014
-
(2006)
J. Biotechnol.
, vol.123
, pp. 273-280
-
-
Lee, C.1
Kim, J.2
Shin, S.G.3
Hwang, S.4
-
34
-
-
42449157617
-
Improved determination of plasmid copy number using quantitative real-time PCR for monitoring fermentation processes
-
Skulj, M., Okrslar, V., Jalen, S., Jevsevar, S., Slanc, P., Strukelj, B., and Menart, V. ( 2008 ) Improved determination of plasmid copy number using quantitative real-time PCR for monitoring fermentation processes Microb. Cell Fact. 7, 6 10.1186/1475-2859-7-6
-
(2008)
Microb. Cell Fact.
, vol.7
, pp. 6
-
-
Skulj, M.1
Okrslar, V.2
Jalen, S.3
Jevsevar, S.4
Slanc, P.5
Strukelj, B.6
Menart, V.7
|