메뉴 건너뛰기




Volumn 44, Issue W1, 2016, Pages W194-W200

GAM: a web-service for integrated transcriptional and metabolic network analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BREAST CELL; GENE EXPRESSION; GENETIC TRANSCRIPTION; GLUCOSE METABOLISM; HUMAN; MACROPHAGE ACTIVATION; METABOLOMICS; NONHUMAN; TRANSCRIPTION REGULATION; ALGORITHM; ANIMAL; ARABIDOPSIS; COMPUTER GRAPHICS; CYTOLOGY; EPITHELIUM CELL; GENETIC DATABASE; GENETICS; IMMUNOLOGY; INTERNET; MACROPHAGE; METABOLISM; METABOLOME; MOUSE; PATHOLOGY; PRIMARY CELL CULTURE; SACCHAROMYCES CEREVISIAE; SOFTWARE; SPECIES DIFFERENCE; TUMOR CELL LINE;

EID: 85003475263     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw266     Document Type: Article
Times cited : (75)

References (28)
  • 1
    • 20644467467 scopus 로고    scopus 로고
    • Systems biotechnology for strain improvement
    • Lee, S.Y., Lee, D.-Y. and Kim, T.Y. (2005) Systems biotechnology for strain improvement. Trends Biotechnol., 23, 349-358.
    • (2005) Trends Biotechnol , vol.23 , pp. 349-358
    • Lee, S.Y.1    Lee, D.-Y.2    Kim, T.Y.3
  • 2
    • 84866487453 scopus 로고    scopus 로고
    • Integration of expression data in genome-scale metabolic network reconstructions
    • Blazier, A.S. and Papin, J.A. (2012) Integration of expression data in genome-scale metabolic network reconstructions. Front. Physiol., 3, 299.
    • (2012) Front. Physiol , vol.3 , pp. 299
    • Blazier, A.S.1    Papin, J.A.2
  • 6
    • 77954197778 scopus 로고    scopus 로고
    • Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
    • Yizhak, K., Benyamini, T., Liebermeister, W., Ruppin, E. and Shlomi, T. (2010) Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. Bioinformatics, 26, i255-i260.
    • (2010) Bioinformatics , vol.26 , pp. i255-i260
    • Yizhak, K.1    Benyamini, T.2    Liebermeister, W.3    Ruppin, E.4    Shlomi, T.5
  • 8
    • 84897674937 scopus 로고    scopus 로고
    • iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis
    • Sun, H., Wang, H., Zhu, R., Tang, K., Gong, Q., Cui, J., Cao, Z. and Liu, Q. (2014) iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis. Bioinformatics, 30, 737-739.
    • (2014) Bioinformatics , vol.30 , pp. 737-739
    • Sun, H.1    Wang, H.2    Zhu, R.3    Tang, K.4    Gong, Q.5    Cui, J.6    Cao, Z.7    Liu, Q.8
  • 9
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • (Suppl. 1)
    • Ideker, T., Ozier, O., Schwikowski, B. and Siegel, A.F. (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 18(Suppl. 1), S233-S240.
    • (2002) Bioinformatics , vol.18 , pp. S233-S240
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 12
    • 84964694431 scopus 로고    scopus 로고
    • Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content
    • Kling, T., Johansson, P., Sanchez, J., Marinescu, V.D., Jörnsten, R. and Nelander, S. (2015) Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content. Nucleic Acids Res., 43, e98.
    • (2015) Nucleic Acids Res , vol.43 , pp. e98
    • Kling, T.1    Johansson, P.2    Sanchez, J.3    Marinescu, V.D.4    Jörnsten, R.5    Nelander, S.6
  • 13
    • 84859959092 scopus 로고    scopus 로고
    • Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation
    • Zhu, J., Sova, P., Xu, Q., Dombek, K.M., Xu, E.Y., Vu, H., Tu, Z., Brem, R.B., Bumgarner, R.E. and Schadt, E.E. (2012) Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation. PLoS Biol., 10, e1001301.
    • (2012) PLoS Biol , vol.10 , pp. e1001301
    • Zhu, J.1    Sova, P.2    Xu, Q.3    Dombek, K.M.4    Xu, E.Y.5    Vu, H.6    Tu, Z.7    Brem, R.B.8    Bumgarner, R.E.9    Schadt, E.E.10
  • 15
    • 84897943328 scopus 로고    scopus 로고
    • Integrative study of Arabidopsis thaliana metabolomic and transcriptomic data with the interactive MarVis-Graph software
    • Landesfeind, M., Kaever, A., Feussner, K., Thurow, C., Gatz, C., Feussner, I. and Meinicke, P. (2014) Integrative study of Arabidopsis thaliana metabolomic and transcriptomic data with the interactive MarVis-Graph software. PeerJ, 2, e239.
    • (2014) PeerJ , vol.2 , pp. e239
    • Landesfeind, M.1    Kaever, A.2    Feussner, K.3    Thurow, C.4    Gatz, C.5    Feussner, I.6    Meinicke, P.7
  • 17
    • 84893854125 scopus 로고    scopus 로고
    • Untargeted LC-MS metabolomics of bronchoalveolar lavage fluid differentiates acute respiratory distress syndrome from health
    • Evans, C.R., Karnovsky, A., Kovach, M.A., Standiford, T.J., Burant, C.F. and Stringer, K.A. (2014) Untargeted LC-MS metabolomics of bronchoalveolar lavage fluid differentiates acute respiratory distress syndrome from health. J. Proteome Res., 13, 640-649.
    • (2014) J. Proteome Res , vol.13 , pp. 640-649
    • Evans, C.R.1    Karnovsky, A.2    Kovach, M.A.3    Standiford, T.J.4    Burant, C.F.5    Stringer, K.A.6
  • 18
    • 46249128543 scopus 로고    scopus 로고
    • Identifying functional modules in protein-protein interaction networks: an integrated exact approach
    • Dittrich, M.T., Klau, G.W., Rosenwald, A., Dandekar, T. and Müller, T. (2008) Identifying functional modules in protein-protein interaction networks: an integrated exact approach. Bioinformatics, 24, i223-i231.
    • (2008) Bioinformatics , vol.24 , pp. i223-i231
    • Dittrich, M.T.1    Klau, G.W.2    Rosenwald, A.3    Dandekar, T.4    Müller, T.5
  • 21
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • Kanehisa, M. (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1
  • 23
    • 84926507971 scopus 로고    scopus 로고
    • limma powers differential expression analyses for RNA-sequencing and microarray studies
    • Ritchie, M.E., Phipson, B., Wu, D., Hu, Y., Law, C.W., Shi, W. and Smyth, G.K. (2015) limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res., 43, e47.
    • (2015) Nucleic Acids Res , vol.43 , pp. e47
    • Ritchie, M.E.1    Phipson, B.2    Wu, D.3    Hu, Y.4    Law, C.W.5    Shi, W.6    Smyth, G.K.7
  • 24
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M.I., Huber, W. and Anders, S. (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol., 15, 1-21.
    • (2014) Genome Biol , vol.15 , pp. 1-21
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 25
    • 84879055437 scopus 로고    scopus 로고
    • Enhanced compact models for the connected subgraph problem and for the shortest path problem in digraphs with negative cycles
    • Haouari, M., Maculan, N. and Mrad, M. (2013) Enhanced compact models for the connected subgraph problem and for the shortest path problem in digraphs with negative cycles. Comput. Oper. Res., 40, 2485-2492.
    • (2013) Comput. Oper. Res , vol.40 , pp. 2485-2492
    • Haouari, M.1    Maculan, N.2    Mrad, M.3
  • 27
    • 0141688316 scopus 로고    scopus 로고
    • Glucose deprivation induces mitochondrial dysfunction and oxidative stress in PC12 cell line
    • Liu, Y., Song, X.-D., Liu, W., Zhang, T.-Y. and Zuo, J. (2003) Glucose deprivation induces mitochondrial dysfunction and oxidative stress in PC12 cell line. J. Cell. Mol. Med., 7, 49-56.
    • (2003) J. Cell. Mol. Med , vol.7 , pp. 49-56
    • Liu, Y.1    Song, X.-D.2    Liu, W.3    Zhang, T.-Y.4    Zuo, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.