Strain-level discrimination of shiga toxin-producing Escherichia coli in spinach using metagenomic sequencing

PLoS ONE

Volumn 11, Issue 12, 2016, Pages

  Leonard, Susan R ^a   Mammel, Mark K ^a   Lacher, David W ^a   Elkins, Christopher A ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SHIGA TOXIN; VIRULENCE FACTOR;

ARTICLE; BACTERIAL FLORA; BACTERIAL GENE; BACTERIAL VIRULENCE; BACTERIUM DETECTION; CONTROLLED STUDY; ESCHERICHIA COLI; FOOD CONTAMINATION; GENE IDENTIFICATION; GENE SEQUENCE; METAGENOME; METAGENOMICS; MICROBIAL COMMUNITY; MICROBIAL CONTAMINATION; NATIVE SPECIES; NONHUMAN; PHYLOGENY; POPULATION ABUNDANCE; SEROTYPING; SHIGA TOXIN PRODUCING ESCHERICHIA COLI; SHOTGUN METAGENOMIC SEQUENCING; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES COMPOSITION; SPINACH; STRAIN IDENTIFICATION; BIOSYNTHESIS; CLASSIFICATION; METABOLISM; MICROBIOLOGY; PATHOGENICITY; SPECIES DIFFERENCE; VIRULENCE;

METAGENOMICS; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; SHIGA TOXIN; SHIGA-TOXIGENIC ESCHERICHIA COLI; SPECIES SPECIFICITY; SPINACIA OLERACEA; VIRULENCE;

EID: 85002997500     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0167870     Document Type: Article

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