-
1
-
-
84926475830
-
Food processing and allergenicity
-
[1] Verhoeckx, K.C.M., Vissers, Y.M., Baumert, J.L., Faludi, R., Feys, M., Flanagan, S., et al. Food processing and allergenicity. Food Chem Toxicol 80 (2015), 223–240.
-
(2015)
Food Chem Toxicol
, vol.80
, pp. 223-240
-
-
Verhoeckx, K.C.M.1
Vissers, Y.M.2
Baumert, J.L.3
Faludi, R.4
Feys, M.5
Flanagan, S.6
-
3
-
-
38049094662
-
Allergenicity assessment of genetically modified crops—what makes sense?
-
Review. Erratum in: Nat Biotechnol. 2008 February;26(2):241. PMID: 18183024
-
[3] Goodman, R.E., Vieths, S., Sampson, H.A., Hill, D., Ebisawa, M., Taylor, S.L., et al. Allergenicity assessment of genetically modified crops—what makes sense?. Nat Biotechnol 26:January (1) (2008), 73–81, 10.1038/nbt1343 Review. Erratum in: Nat Biotechnol. 2008 February;26(2):241. PMID: 18183024.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.January (1)
, pp. 73-81
-
-
Goodman, R.E.1
Vieths, S.2
Sampson, H.A.3
Hill, D.4
Ebisawa, M.5
Taylor, S.L.6
-
4
-
-
85010891674
-
Codex Alimentarius Commission guidelines. Foods derived from modern biotechnology (2003 reprinted in the second edition in 2009)
-
World Health Organization and Agricultural Organization of the United Nations
-
[4] Codex Alimentarius Commission guidelines. Foods derived from modern biotechnology (2003 reprinted in the second edition in 2009). 2009, World Health Organization and Agricultural Organization of the United Nations.
-
(2009)
-
-
-
5
-
-
84886582371
-
Comparative assessment of multiple criteria for the in silico prediction of cross-reactivity of proteins to known allergens
-
[5] Mirsky, H.P., Cressman, R.J., Ladics, G.S., Comparative assessment of multiple criteria for the in silico prediction of cross-reactivity of proteins to known allergens. Regul Toxicol Pharmacol 67:2 (2013), 232–239.
-
(2013)
Regul Toxicol Pharmacol
, vol.67
, Issue.2
, pp. 232-239
-
-
Mirsky, H.P.1
Cressman, R.J.2
Ladics, G.S.3
-
6
-
-
84879520811
-
Evaluation and integration of existing methods for computational prediction of allergens
-
[6] Wang, J., Yu, Y., Zhao, Y., Zhang, D., Li, J., Evaluation and integration of existing methods for computational prediction of allergens. BMC Bioinform, 14, 2013, S1, 10.1186/1476-2105-14-S4-s1.
-
(2013)
BMC Bioinform
, vol.14
, pp. S1
-
-
Wang, J.1
Yu, Y.2
Zhao, Y.3
Zhang, D.4
Li, J.5
-
7
-
-
53049104153
-
Current Codex guidelines for assessment of potential protein allergenicity
-
[7] Ladics, G.S., Current Codex guidelines for assessment of potential protein allergenicity. Food Chem Toxicol 46 (2008), S20–S23.
-
(2008)
Food Chem Toxicol
, vol.46
, pp. S20-S23
-
-
Ladics, G.S.1
-
8
-
-
0003432228
-
Evaluation of allergenicity of genetically modified foods. Report of a Joint FAO/WHO Expert Consultation on Allergenicity of Foods derived from biotechnology, 22nd–25th January, 2001
-
FAO/WHO
-
[8] FAO/WHO, Evaluation of allergenicity of genetically modified foods. Report of a Joint FAO/WHO Expert Consultation on Allergenicity of Foods derived from biotechnology, 22nd–25th January, 2001. 2001, FAO/WHO, 15.
-
(2001)
, pp. 15
-
-
FAO/WHO1
-
9
-
-
80052659566
-
IgE-binding epitopes: a reappraisal
-
[9] Aalberese, R.C., Crameri, R., IgE-binding epitopes: a reappraisal. Allergy 66 (2011), 1261–1274.
-
(2011)
Allergy
, vol.66
, pp. 1261-1274
-
-
Aalberese, R.C.1
Crameri, R.2
-
10
-
-
84959465378
-
AllergenOnline: a peer-reviewed, curated allergen database to assess novel food proteins for potential cross-reactivity
-
[10] Goodman, R.E., Ebisawa, M., Ferreira, F., Sampson, H.A., van Ree, R., Vieths, S., et al. AllergenOnline: a peer-reviewed, curated allergen database to assess novel food proteins for potential cross-reactivity. Mol Nutr Food Res, 2016, 10.1002/mnfr.201500769.
-
(2016)
Mol Nutr Food Res
-
-
Goodman, R.E.1
Ebisawa, M.2
Ferreira, F.3
Sampson, H.A.4
van Ree, R.5
Vieths, S.6
-
11
-
-
84934922001
-
Evaluation of Bar, Barnase and Barstar recombinant proteins expressed in genetically engineered Brassica juncea (Indian mustard) for potential risks of food allergy using bioinformatics and literature searches
-
[11] Siruguri, V., Bharatraj, D.K., Vankudavath, R.N., Mendu, V.V., Gupta, V., Goodman, R.E., Evaluation of Bar, Barnase and Barstar recombinant proteins expressed in genetically engineered Brassica juncea (Indian mustard) for potential risks of food allergy using bioinformatics and literature searches. Food Chem Toxicol 83 (2015), 93–102.
-
(2015)
Food Chem Toxicol
, vol.83
, pp. 93-102
-
-
Siruguri, V.1
Bharatraj, D.K.2
Vankudavath, R.N.3
Mendu, V.V.4
Gupta, V.5
Goodman, R.E.6
-
12
-
-
84899899719
-
Safety assessment of the calcium-binding protein, apoaequorin, expressed by Escherichia coli
-
[12] Moran, D.L., Tetteh, A.O., Goodman, R.E., Underwood, M.Y., Safety assessment of the calcium-binding protein, apoaequorin, expressed by Escherichia coli. Regul Toxicol Pharmacol 69:2 (2014), 243–249.
-
(2014)
Regul Toxicol Pharmacol
, vol.69
, Issue.2
, pp. 243-249
-
-
Moran, D.L.1
Tetteh, A.O.2
Goodman, R.E.3
Underwood, M.Y.4
-
13
-
-
31944437281
-
Napins, 2 S albumins, are major allergens in oilseed rape and turnip rape
-
[13] Puumalainen, T.J., Poikonen, S., Kotoyuori, A., Vaali, K., Kalkkinen, N., Napins, 2 S albumins, are major allergens in oilseed rape and turnip rape. J Allergy Clin Immunol 117 (2006), 426–432.
-
(2006)
J Allergy Clin Immunol
, vol.117
, pp. 426-432
-
-
Puumalainen, T.J.1
Poikonen, S.2
Kotoyuori, A.3
Vaali, K.4
Kalkkinen, N.5
-
14
-
-
0038380463
-
Allergenicity prediction by protein sequence
-
[14] Stadler, M.B., Stadler, B.M., Allergenicity prediction by protein sequence. FASEB J 17:9 (2003), 1141–1143.
-
(2003)
FASEB J
, vol.17
, Issue.9
, pp. 1141-1143
-
-
Stadler, M.B.1
Stadler, B.M.2
-
15
-
-
84978023494
-
Allergic sensitization: screening methods
-
[15] Ladics, G.S., Fry, J., Goodman, R., Herouet-Guicheney, C., Hoffmann-Sommergruber, K., Madsen, C.B., et al. Allergic sensitization: screening methods. Clin Transl Allergy, 4, 2014, 13.
-
(2014)
Clin Transl Allergy
, vol.4
, pp. 13
-
-
Ladics, G.S.1
Fry, J.2
Goodman, R.3
Herouet-Guicheney, C.4
Hoffmann-Sommergruber, K.5
Madsen, C.B.6
-
16
-
-
25644434412
-
A novel approach for investigation of specific and cross reactive IgE epitopes on Bet v 1 and homologous food allergens in individual patients
-
[17] Mittag, D., Batori, V., Neudecker, P., Wiche, R., Friis, E.P., Ballmer-Weber, B.K., et al. A novel approach for investigation of specific and cross reactive IgE epitopes on Bet v 1 and homologous food allergens in individual patients. Mol Immunol 43 (2006), 268–278.
-
(2006)
Mol Immunol
, vol.43
, pp. 268-278
-
-
Mittag, D.1
Batori, V.2
Neudecker, P.3
Wiche, R.4
Friis, E.P.5
Ballmer-Weber, B.K.6
-
17
-
-
84871255686
-
Accuracy of protein allergenicity prediction can be improved by taking into account data on allergenic protein discontinuous peptides
-
[18] Bragin, A.O., Demenkov, P.S., Kolshonov, N.A., Ivanisenko, V.A., Accuracy of protein allergenicity prediction can be improved by taking into account data on allergenic protein discontinuous peptides. J Biomol Struct Dyn 1 (2013), 59–64.
-
(2013)
J Biomol Struct Dyn
, vol.1
, pp. 59-64
-
-
Bragin, A.O.1
Demenkov, P.S.2
Kolshonov, N.A.3
Ivanisenko, V.A.4
-
18
-
-
41449094497
-
Allergens are distributed into a few protein families and possess a restricted number of biochemical functions
-
[19] Radauer, C., Bublin, M., Wagner, S., Mari, A., Breiteneder, H., Allergens are distributed into a few protein families and possess a restricted number of biochemical functions. J Allergy Clin Immunol 121:4 (2008), 847–852.
-
(2008)
J Allergy Clin Immunol
, vol.121
, Issue.4
, pp. 847-852
-
-
Radauer, C.1
Bublin, M.2
Wagner, S.3
Mari, A.4
Breiteneder, H.5
-
19
-
-
19044365083
-
The classification, functions and evolutionary relationships of plant proteins in relation to food allergies
-
C.E.N. Mills P.R. Shewry Blackwell Sciences
-
[20] Shewry, P.R., Jenkins, J.A., Beaudoin, F., Mills, E.N.C., The classification, functions and evolutionary relationships of plant proteins in relation to food allergies. Mills, C.E.N., Shewry, P.R., (eds.) Plant food allergens, 2004, Blackwell Sciences, 24–86.
-
(2004)
Plant food allergens
, pp. 24-86
-
-
Shewry, P.R.1
Jenkins, J.A.2
Beaudoin, F.3
Mills, E.N.C.4
-
20
-
-
49749085210
-
An SVM method using evolutionary information for the identification of allergenic proteins
-
[21] Kumar, K.K., Sheloker, P.S., An SVM method using evolutionary information for the identification of allergenic proteins. Bioinformation 2:6 (2008), 253–256.
-
(2008)
Bioinformation
, vol.2
, Issue.6
, pp. 253-256
-
-
Kumar, K.K.1
Sheloker, P.S.2
-
21
-
-
67649219008
-
AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins
-
[22] Muh, H.C., Tong, J.C., Tammi, M.T., AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins. PLoS ONE, 4(6), 2009, e5861, 10.1371/journal.pone.0005861.
-
(2009)
PLoS ONE
, vol.4
, Issue.6
, pp. e5861
-
-
Muh, H.C.1
Tong, J.C.2
Tammi, M.T.3
-
22
-
-
33747871140
-
AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
-
[23] Saha, S., Raghava, S.P.S., AlgPred: prediction of allergenic proteins and mapping of IgE epitopes. Nucleic Acid Res, 34, 2006, 10.1093/nar/gkL343.
-
(2006)
Nucleic Acid Res
, vol.34
-
-
Saha, S.1
Raghava, S.P.S.2
-
23
-
-
77956319457
-
Immunoinformatics: an integrated scenario
-
[24] Tomar, N., De, R.K., Immunoinformatics: an integrated scenario. Immunology 131:2 (2010), 153–168.
-
(2010)
Immunology
, vol.131
, Issue.2
, pp. 153-168
-
-
Tomar, N.1
De, R.K.2
-
24
-
-
83155164579
-
Predictions versus high-throughput experiments in T-cell epitope discovery: competition and synergy?
-
[25] Lundegaard, C., Lund, O., Nielsen, M., Predictions versus high-throughput experiments in T-cell epitope discovery: competition and synergy?. Expert Rev Vaccines 11:1 (2012), 3–54.
-
(2012)
Expert Rev Vaccines
, vol.11
, Issue.1
, pp. 3-54
-
-
Lundegaard, C.1
Lund, O.2
Nielsen, M.3
-
25
-
-
33845790480
-
How reliable is the structural prediction of IgE-binding epitopes of allergens? The case study of plant lipid transfer proteins
-
[26] Borges, J-P., Barre, A., Culerrier, R., Archimbaud, N., Didier, A., Rougé, P., How reliable is the structural prediction of IgE-binding epitopes of allergens? The case study of plant lipid transfer proteins. Biochemie 89:1 (2007), 83–97.
-
(2007)
Biochemie
, vol.89
, Issue.1
, pp. 83-97
-
-
Borges, J.-P.1
Barre, A.2
Culerrier, R.3
Archimbaud, N.4
Didier, A.5
Rougé, P.6
-
26
-
-
0037093644
-
Increasing the precision of comparative models with YASARA NOVA – a self-parameterizing force field
-
[27] Krieger, E., Koraimann, G., Vriend, G., Increasing the precision of comparative models with YASARA NOVA – a self-parameterizing force field. Proteins 47:3 (2002), 393–402.
-
(2002)
Proteins
, vol.47
, Issue.3
, pp. 393-402
-
-
Krieger, E.1
Koraimann, G.2
Vriend, G.3
-
27
-
-
84871255686
-
Accuracy of protein allergenicity prediction can be improved by taking into account data on allergenic protein discontinuous peptides
-
[28] Bragin, A.O., Demenkov, D.S., Kolchanov, N.A., Ivanisenko, V.A., Accuracy of protein allergenicity prediction can be improved by taking into account data on allergenic protein discontinuous peptides. J Biomol Struct Dyn 13:1 (2013), 59–64.
-
(2013)
J Biomol Struct Dyn
, vol.13
, Issue.1
, pp. 59-64
-
-
Bragin, A.O.1
Demenkov, D.S.2
Kolchanov, N.A.3
Ivanisenko, V.A.4
-
28
-
-
84889677044
-
PREAL: prediction of allergenicity protein by maximum relevance minimum redundancy (mRMR) feature selection
-
[29] Wang, J., Zhang, D., Li, J., PREAL: prediction of allergenicity protein by maximum relevance minimum redundancy (mRMR) feature selection. BMC Syst Biol, 7(5), 2013, 59.
-
(2013)
BMC Syst Biol
, vol.7
, Issue.5
, pp. 59
-
-
Wang, J.1
Zhang, D.2
Li, J.3
-
29
-
-
84928809810
-
Predict and analyse protein glycation sites with the mRMR and IFS methods
-
[30] Liu, y., Gu, W., Zhang, W., Wang, J., Predict and analyse protein glycation sites with the mRMR and IFS methods. BioMed Res Int, 2015, 10.1155/2015/561549.
-
(2015)
BioMed Res Int
-
-
Liu, Y.1
Gu, W.2
Zhang, W.3
Wang, J.4
-
30
-
-
84907487648
-
Sspro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profile, machine learning and structural similarity
-
[31] Magnan, C.N., Balidi, P., Sspro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profile, machine learning and structural similarity. Bioinformatics 30:18 (2014), 2592–2597.
-
(2014)
Bioinformatics
, vol.30
, Issue.18
, pp. 2592-2597
-
-
Magnan, C.N.1
Balidi, P.2
-
31
-
-
12744279638
-
Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins
-
[32] Bjorklund, A.K., Soeria-Atmadja, D., Zorzet, A., Hammerling, U., Gustafsson, M.G., Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins. Bioinformatics 21:1 (2005), 39–50.
-
(2005)
Bioinformatics
, vol.21
, Issue.1
, pp. 39-50
-
-
Bjorklund, A.K.1
Soeria-Atmadja, D.2
Zorzet, A.3
Hammerling, U.4
Gustafsson, M.G.5
-
32
-
-
34547567978
-
EVALLER: a web server for in silico assessment of potential protein allergenicity
-
[33] Barrio, A.M., EVALLER: a web server for in silico assessment of potential protein allergenicity. Nucleic Acids Res 35:Suppl 2 (2007), W694–W700.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W694-W700
-
-
Barrio, A.M.1
-
33
-
-
84901583210
-
AllerTop v 2 – a server for in silico prediction of allergens
-
[34] Dimitrov, I., Bangor, I., Flower, D.R., AllerTop v 2 – a server for in silico prediction of allergens. J Mol Model, 20(6), 2014, 2278.
-
(2014)
J Mol Model
, vol.20
, Issue.6
, pp. 2278
-
-
Dimitrov, I.1
Bangor, I.2
Flower, D.R.3
-
34
-
-
84884187982
-
AllerTop – a server for in silico prediction of allergens
-
[35] Dimitrov, I., Flower, D.R., Doytchinova, I., AllerTop – a server for in silico prediction of allergens. BMC Bioinform, 14(6), 2013, S4.
-
(2013)
BMC Bioinform
, vol.14
, Issue.6
, pp. S4
-
-
Dimitrov, I.1
Flower, D.R.2
Doytchinova, I.3
-
35
-
-
50649101652
-
BIOPEP database and other programs for processing bioactive peptide sequences
-
[36] Minkiewicz, P., Dziuba, J., Iwaniak, A., Dziuba, M., Darewicz, M., BIOPEP database and other programs for processing bioactive peptide sequences. J AOAC Int 91 (2008), 965–980.
-
(2008)
J AOAC Int
, vol.91
, pp. 965-980
-
-
Minkiewicz, P.1
Dziuba, J.2
Iwaniak, A.3
Dziuba, M.4
Darewicz, M.5
-
36
-
-
75549084463
-
The Immune Epitope Database 2.0
-
[37] Vita, R., Zarebski, L., Greenbaum, J.A., Emami, H., Hoof, I., Salimi, N., et al. The Immune Epitope Database 2.0. Nucleic Acids Res 38 (2010), D854–D862.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D854-D862
-
-
Vita, R.1
Zarebski, L.2
Greenbaum, J.A.3
Emami, H.4
Hoof, I.5
Salimi, N.6
-
37
-
-
20744452365
-
GOR V server for protein secondary structure prediction
-
[38] Sen, T.Z., Jernigan, R.L., Garnier, J., Kloczkowski, A., GOR V server for protein secondary structure prediction. Bioinformatics 21:11 (2005), 2787–2788.
-
(2005)
Bioinformatics
, vol.21
, Issue.11
, pp. 2787-2788
-
-
Sen, T.Z.1
Jernigan, R.L.2
Garnier, J.3
Kloczkowski, A.4
-
38
-
-
84924989748
-
The occurrence of sequence identical with epitopes from the allergen pen a 1.0102 among food and non-food proteins
-
[39] Minkiewicz, P., Sokolowska, J., Darewicz, M., The occurrence of sequence identical with epitopes from the allergen pen a 1.0102 among food and non-food proteins. Pol J Food Nutr Sci 65:1 (2015), 21–29.
-
(2015)
Pol J Food Nutr Sci
, vol.65
, Issue.1
, pp. 21-29
-
-
Minkiewicz, P.1
Sokolowska, J.2
Darewicz, M.3
-
39
-
-
0036589311
-
Bioinformatic methods for identifying known or potential allergens in the safety assessment of genetically modified crops
-
[40] Goodman, R.E., Silvanovich, A., Hileman, R.E., Bannon, G.A., Rice, E.A., Astwood, J.D., Bioinformatic methods for identifying known or potential allergens in the safety assessment of genetically modified crops. Comments Toxicol 8:3 (2002), 251–269.
-
(2002)
Comments Toxicol
, vol.8
, Issue.3
, pp. 251-269
-
-
Goodman, R.E.1
Silvanovich, A.2
Hileman, R.E.3
Bannon, G.A.4
Rice, E.A.5
Astwood, J.D.6
-
40
-
-
0027215340
-
DNA and peptide sequences and chemical processes multi-variably modelled by principal components analysis and partial least square projections to latent structures
-
[41] Wold, S., Jonsson, J., Sjostrom, M., Sandberg, M., Rännar, S., DNA and peptide sequences and chemical processes multi-variably modelled by principal components analysis and partial least square projections to latent structures. Anal Chim Acta 277 (1993), 239–253.
-
(1993)
Anal Chim Acta
, vol.277
, pp. 239-253
-
-
Wold, S.1
Jonsson, J.2
Sjostrom, M.3
Sandberg, M.4
Rännar, S.5
-
41
-
-
84884187982
-
AllerTOP – a server for in silico prediction of allergens
-
[42] Dimitrov, I., Flower, D.R., Doytchinova, I., AllerTOP – a server for in silico prediction of allergens. BMC Bioinform, 14, 2013, S4.
-
(2013)
BMC Bioinform
, vol.14
, pp. S4
-
-
Dimitrov, I.1
Flower, D.R.2
Doytchinova, I.3
-
42
-
-
17744405989
-
Integrated databanks access and sequence/structure analysis services at PBIL
-
[43] Pierriere, G., Combet, C., Penel, S., Blanchet, C., Thioulouse, J., Integrated databanks access and sequence/structure analysis services at PBIL. Nucleic Acids Res 31:13 (2003), 3393–3399.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3393-3399
-
-
Pierriere, G.1
Combet, C.2
Penel, S.3
Blanchet, C.4
Thioulouse, J.5
-
43
-
-
33748672467
-
Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning
-
[44] Soeria-Atmadja, D., Lundell, T., Gustafsson, M.G., Hammerling, U., Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning. Nucleic Acids Res 34:13 (2006), 3779–3793.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.13
, pp. 3779-3793
-
-
Soeria-Atmadja, D.1
Lundell, T.2
Gustafsson, M.G.3
Hammerling, U.4
-
44
-
-
33751104704
-
Improved method for predicting linear B-cell epitopes
-
[45] Larsen, J.E., Lund, O., Nielsen, M., Improved method for predicting linear B-cell epitopes. Immunome Res, 2, 2006, 2, 10.1186/1745-7580-2-2.
-
(2006)
Immunome Res
, vol.2
, pp. 2
-
-
Larsen, J.E.1
Lund, O.2
Nielsen, M.3
-
45
-
-
80051623308
-
Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature
-
[46] Zhang, W., Xiang, Y., Zhao, M., Zou, H., Ye, X., Liu, J., Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature. BMC Bioinform, 17, 2011, 10.1186/1471-210512-341.
-
(2011)
BMC Bioinform
, vol.17
-
-
Zhang, W.1
Xiang, Y.2
Zhao, M.3
Zou, H.4
Ye, X.5
Liu, J.6
-
46
-
-
59249095901
-
A machine-learning approach for predicting B cell epitopes
-
[47] Rubinstein, N.D., Mayrose, I., Pupko, T., A machine-learning approach for predicting B cell epitopes. Mol Immunol 46 (2008), 840–847.
-
(2008)
Mol Immunol
, vol.46
, pp. 840-847
-
-
Rubinstein, N.D.1
Mayrose, I.2
Pupko, T.3
|