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Volumn 113, Issue 47, 2016, Pages 13432-13437

High-density array-CGH with targeted NGS unmask multiple noncontiguous minute deletions on chromosome 3p21 in mesothelioma

Author keywords

BAP1; Mesothelioma; PBRM1; SETD2; SMARCC1

Indexed keywords

BRCA1 ASSOCIATED PROTEIN 1; BRCA1 PROTEIN; GENOMIC DNA; PROTEIN; SET DOMAIN CONTAINING PROTEIN 2; STEROL REGULATORY ELEMENT BINDING PROTEIN 1; UNCLASSIFIED DRUG; MESSENGER RNA;

EID: 84996671366     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1612074113     Document Type: Article
Times cited : (126)

References (48)
  • 1
    • 84982133114 scopus 로고    scopus 로고
    • Consensus report of the 2015 Weinman International Conference on Mesothelioma
    • Carbone M, et al. (2016) Consensus report of the 2015 Weinman International Conference on Mesothelioma. J Thorac Oncol 11(8):1246-62.
    • (2016) J Thorac Oncol , vol.11 , Issue.8 , pp. 1246-1262
    • Carbone, M.1
  • 2
    • 84953218392 scopus 로고    scopus 로고
    • Combined genetic and genealogic studies uncover a large BAP1 cancer syndrome kindred tracing back nine generations to a common ancestor from the 1700s
    • Carbone M, et al. (2015) Combined genetic and genealogic studies uncover a large BAP1 cancer syndrome kindred tracing back nine generations to a common ancestor from the 1700s. PLoS Genet 11(12):e1005633.
    • (2015) PLoS Genet , vol.11 , Issue.12 , pp. e1005633
    • Carbone, M.1
  • 3
    • 0347600558 scopus 로고    scopus 로고
    • Molecular pathogenesis of malignant mesothelioma and its relationship to simian virus 40
    • Gazdar AF, Carbone M (2003) Molecular pathogenesis of malignant mesothelioma and its relationship to simian virus 40. Clin Lung Cancer 5(3):177-181.
    • (2003) Clin Lung Cancer , vol.5 , Issue.3 , pp. 177-181
    • Gazdar, A.F.1    Carbone, M.2
  • 4
    • 0034011844 scopus 로고    scopus 로고
    • Simian virus 40: The link with human malignant mesothelioma is well established
    • Carbone M, Rizzo P, Pass H (2000) Simian virus 40: The link with human malignant mesothelioma is well established. Anticancer Res 20(2 A):875-877.
    • (2000) Anticancer Res , vol.20 , Issue.2 A , pp. 875-877
    • Carbone, M.1    Rizzo, P.2    Pass, H.3
  • 5
    • 84867068847 scopus 로고    scopus 로고
    • Early detection of malignant pleural mesothelioma in asbestos-exposed individuals with a noninvasive proteomics-based surveillance tool
    • Ostroff RM, et al. (2012) Early detection of malignant pleural mesothelioma in asbestos-exposed individuals with a noninvasive proteomics-based surveillance tool. PLoS One 7(10):e46091.
    • (2012) PLoS One , vol.7 , Issue.10 , pp. e46091
    • Ostroff, R.M.1
  • 6
    • 84966429389 scopus 로고    scopus 로고
    • HMGB1 and its hyperacetylated isoform are sensitive and specific serum biomarkers to detect asbestos exposure and to identify mesothelioma patients
    • Napolitano A, et al. (2016) HMGB1 and its hyperacetylated isoform are sensitive and specific serum biomarkers to detect asbestos exposure and to identify mesothelioma patients. Clin Cancer Res 22(12):3087-3096.
    • (2016) Clin Cancer Res , vol.22 , Issue.12 , pp. 3087-3096
    • Napolitano, A.1
  • 7
    • 84989869556 scopus 로고    scopus 로고
    • Malignant mesothelioma: Time to translate?
    • Napolitano A, Carbone M (2016) Malignant mesothelioma: Time to translate? Trends in Cancer 2(9):467-474.
    • (2016) Trends in Cancer , vol.2 , Issue.9 , pp. 467-474
    • Napolitano, A.1    Carbone, M.2
  • 8
    • 84937412447 scopus 로고    scopus 로고
    • Not all next generation sequencing diagnostics are created equal: Understanding the nuances of solid tumor assay design for somatic mutation detection
    • Gray PN, Dunlop CL, Elliott AM (2015) Not all next generation sequencing diagnostics are created equal: Understanding the nuances of solid tumor assay design for somatic mutation detection. Cancers (Basel) 7(3):1313-1332.
    • (2015) Cancers (Basel) , vol.7 , Issue.3 , pp. 1313-1332
    • Gray, P.N.1    Dunlop, C.L.2    Elliott, A.M.3
  • 9
    • 84920940180 scopus 로고    scopus 로고
    • Whole-exome sequencing reveals frequent genetic alterations in BAP1, NF2, CDKN2A, and CUL1 in malignant pleural mesothelioma
    • Guo G, et al. (2015) Whole-exome sequencing reveals frequent genetic alterations in BAP1, NF2, CDKN2A, and CUL1 in malignant pleural mesothelioma. Cancer Res 75(2):264-269.
    • (2015) Cancer Res , vol.75 , Issue.2 , pp. 264-269
    • Guo, G.1
  • 10
    • 84938287128 scopus 로고    scopus 로고
    • Targeted next-generation sequencing of cancer genes in advanced stage malignant pleural mesothelioma: A retrospective study
    • Lo Iacono M, et al. (2015) Targeted next-generation sequencing of cancer genes in advanced stage malignant pleural mesothelioma: a retrospective study. J Thorac Oncol 10(3):492-499.
    • (2015) J Thorac Oncol , vol.10 , Issue.3 , pp. 492-499
    • Lo Iacono, M.1
  • 11
    • 84959205080 scopus 로고    scopus 로고
    • Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations
    • Bueno R, et al. (2016) Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations. Nat Genet 48(4):407-416.
    • (2016) Nat Genet , vol.48 , Issue.4 , pp. 407-416
    • Bueno, R.1
  • 12
    • 84989929921 scopus 로고    scopus 로고
    • Genome-based mutational analysis by next generation sequencing in patients with malignant pleural and peritoneal mesothelioma
    • Ugurluer G, et al. (2016) Genome-based mutational analysis by next generation sequencing in patients with malignant pleural and peritoneal mesothelioma. Anticancer Res 36(5):2331-2338.
    • (2016) Anticancer Res , vol.36 , Issue.5 , pp. 2331-2338
    • Ugurluer, G.1
  • 13
    • 79959694149 scopus 로고    scopus 로고
    • The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma
    • Bott M, et al. (2011) The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma. Nat Genet 43(7):668-672.
    • (2011) Nat Genet , vol.43 , Issue.7 , pp. 668-672
    • Bott, M.1
  • 14
    • 80053385701 scopus 로고    scopus 로고
    • Germline BAP1 mutations predispose to malignant mesothelioma
    • Testa JR, et al. (2011) Germline BAP1 mutations predispose to malignant mesothelioma. Nat Genet 43(10):1022-1025.
    • (2011) Nat Genet , vol.43 , Issue.10 , pp. 1022-1025
    • Testa, J.R.1
  • 15
    • 84886466708 scopus 로고    scopus 로고
    • Clinical characteristics of patients with malignant pleural mesothelioma harboring somatic BAP1 mutations
    • Zauderer MG, et al. (2013) Clinical characteristics of patients with malignant pleural mesothelioma harboring somatic BAP1 mutations. J Thorac Oncol 8(11):1430-1433.
    • (2013) J Thorac Oncol , vol.8 , Issue.11 , pp. 1430-1433
    • Zauderer, M.G.1
  • 16
    • 84938272948 scopus 로고    scopus 로고
    • Recent insights emerging from malignant mesothelioma genome sequencing
    • Carbone M, Gaudino G, Yang H (2015) Recent insights emerging from malignant mesothelioma genome sequencing. J Thorac Oncol 10(3):409-411.
    • (2015) J Thorac Oncol , vol.10 , Issue.3 , pp. 409-411
    • Carbone, M.1    Gaudino, G.2    Yang, H.3
  • 17
    • 84875758730 scopus 로고    scopus 로고
    • Lessons from the cancer genome
    • Garraway LA, Lander ES (2013) Lessons from the cancer genome. Cell 153(1):17-37.
    • (2013) Cell , vol.153 , Issue.1 , pp. 17-37
    • Garraway, L.A.1    Lander, E.S.2
  • 19
    • 0027853058 scopus 로고
    • Recurrent deletions of specific chromosomal sites in 1p, 3p, 6q, and 9p in human malignant mesothelioma
    • Taguchi T, Jhanwar SC, Siegfried JM, Keller SM, Testa JR (1993) Recurrent deletions of specific chromosomal sites in 1p, 3p, 6q, and 9p in human malignant mesothelioma. Cancer Res 53(18):4349-4355.
    • (1993) Cancer Res , vol.53 , Issue.18 , pp. 4349-4355
    • Taguchi, T.1    Jhanwar, S.C.2    Siegfried, J.M.3    Keller, S.M.4    Testa, J.R.5
  • 20
    • 84860248968 scopus 로고    scopus 로고
    • Frequent inactivation of the BAP1 gene in epithelioid-type malignant mesothelioma
    • Yoshikawa Y, et al. (2012) Frequent inactivation of the BAP1 gene in epithelioid-type malignant mesothelioma. Cancer Sci 103(5):868-874.
    • (2012) Cancer Sci , vol.103 , Issue.5 , pp. 868-874
    • Yoshikawa, Y.1
  • 21
    • 84938286152 scopus 로고    scopus 로고
    • High Incidence of Somatic BAP1 alterations in sporadic malignant mesothelioma
    • Nasu M, et al. (2015) High Incidence of Somatic BAP1 alterations in sporadic malignant mesothelioma. J Thorac Oncol 10(4):565-576.
    • (2015) J Thorac Oncol , vol.10 , Issue.4 , pp. 565-576
    • Nasu, M.1
  • 22
    • 0028133288 scopus 로고
    • Loss of heterozygosity on the short arm of chromosome 3 in mesothelioma cell lines and solid tumors
    • Zeiger MA, Gnarra JR, Zbar B, Linehan WM, Pass HI (1994) Loss of heterozygosity on the short arm of chromosome 3 in mesothelioma cell lines and solid tumors. Genes Chromosomes Cancer 11(1):15-20.
    • (1994) Genes Chromosomes Cancer , vol.11 , Issue.1 , pp. 15-20
    • Zeiger, M.A.1    Gnarra, J.R.2    Zbar, B.3    Linehan, W.M.4    Pass, H.I.5
  • 23
    • 37549058023 scopus 로고    scopus 로고
    • Gene copy number analysis in malignant pleural mesothelioma using oligonucleotide array CGH
    • Lindholm PM, et al. (2007) Gene copy number analysis in malignant pleural mesothelioma using oligonucleotide array CGH. Cytogenet Genome Res 119(1-2):46-52.
    • (2007) Cytogenet Genome Res , vol.119 , Issue.1-2 , pp. 46-52
    • Lindholm, P.M.1
  • 24
    • 33846674993 scopus 로고    scopus 로고
    • Genomic profiling of malignant pleural mesothelioma with array-based comparative genomic hybridization shows frequent non-random chromosomal alteration regions including JUN amplification on 1p32
    • Taniguchi T, et al. (2007) Genomic profiling of malignant pleural mesothelioma with array-based comparative genomic hybridization shows frequent non-random chromosomal alteration regions including JUN amplification on 1p32. Cancer Sci 98(3):438-446.
    • (2007) Cancer Sci , vol.98 , Issue.3 , pp. 438-446
    • Taniguchi, T.1
  • 25
    • 58149286580 scopus 로고    scopus 로고
    • Genomic events associated with progression of pleural malignant mesothelioma
    • Ivanov SV, et al. (2009) Genomic events associated with progression of pleural malignant mesothelioma. Int J cancer 124(3):589-599.
    • (2009) Int J Cancer , vol.124 , Issue.3 , pp. 589-599
    • Ivanov, S.V.1
  • 26
    • 80054808016 scopus 로고    scopus 로고
    • Frequent deletion of 3p21.1 region carrying semaphorin 3G and aberrant expression of the genes participating in semaphorin signaling in the epithelioid type of malignant mesothelioma cells
    • Yoshikawa Y, et al. (2011) Frequent deletion of 3p21.1 region carrying semaphorin 3G and aberrant expression of the genes participating in semaphorin signaling in the epithelioid type of malignant mesothelioma cells. Int J Oncol 39(6):1365-1374.
    • (2011) Int J Oncol , vol.39 , Issue.6 , pp. 1365-1374
    • Yoshikawa, Y.1
  • 27
    • 36148946432 scopus 로고    scopus 로고
    • Evaluation of the 3p21.3 tumour-suppressor gene cluster
    • Hesson LB, Cooper WN, Latif F (2007) Evaluation of the 3p21.3 tumour-suppressor gene cluster. Oncogene 26(52):7283-7301.
    • (2007) Oncogene , vol.26 , Issue.52 , pp. 7283-7301
    • Hesson, L.B.1    Cooper, W.N.2    Latif, F.3
  • 28
    • 79952120598 scopus 로고    scopus 로고
    • Cancer: When catastrophe strikes a cell
    • Tubio JM, Estivill X (2011) Cancer: When catastrophe strikes a cell. Nature 470(7335):476-477.
    • (2011) Nature , vol.470 , Issue.7335 , pp. 476-477
    • Tubio, J.M.1    Estivill, X.2
  • 29
    • 84911002685 scopus 로고    scopus 로고
    • Biallelic germline and somatic mutations in malignant mesothelioma: Multiple mutations in transcription regulators including mSWI/SNF genes
    • Yoshikawa Y, et al. (2015) Biallelic germline and somatic mutations in malignant mesothelioma: Multiple mutations in transcription regulators including mSWI/SNF genes. Int J Cancer 136(3):560-571.
    • (2015) Int J Cancer , vol.136 , Issue.3 , pp. 560-571
    • Yoshikawa, Y.1
  • 30
    • 75149188170 scopus 로고    scopus 로고
    • Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes
    • Dalgliesh GL, et al. (2010) Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes. Nature 463(7279):360-363.
    • (2010) Nature , vol.463 , Issue.7279 , pp. 360-363
    • Dalgliesh, G.L.1
  • 31
    • 79251635938 scopus 로고    scopus 로고
    • Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma
    • Varela I, et al. (2011) Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature 469(7331):539-542.
    • (2011) Nature , vol.469 , Issue.7331 , pp. 539-542
    • Varela, I.1
  • 32
    • 84952935440 scopus 로고    scopus 로고
    • Elucidating the cancer-specific genetic alteration spectrum of glioblastoma derived cell lines from whole exome and RNA sequencing
    • Patil V, Pal J, Somasundaram K (2015) Elucidating the cancer-specific genetic alteration spectrum of glioblastoma derived cell lines from whole exome and RNA sequencing. Oncotarget 6(41):43452-43471.
    • (2015) Oncotarget , vol.6 , Issue.41 , pp. 43452-43471
    • Patil, V.1    Pal, J.2    Somasundaram, K.3
  • 33
    • 84945493573 scopus 로고    scopus 로고
    • Genomic landscapes of breast fibroepithelial tumors
    • Tan J, et al. (2015) Genomic landscapes of breast fibroepithelial tumors. Nat Genet 47(11):1341-1345.
    • (2015) Nat Genet , vol.47 , Issue.11 , pp. 1341-1345
    • Tan, J.1
  • 34
    • 84938414877 scopus 로고    scopus 로고
    • Targeted next-generation sequencing reveals high frequency of mutations in epigenetic regulators across treatment-naïve patient melanomas
    • Lee JJ, et al. (2015) Targeted next-generation sequencing reveals high frequency of mutations in epigenetic regulators across treatment-naïve patient melanomas. Clin Epigenetics 7:59.
    • (2015) Clin Epigenetics , vol.7 , pp. 59
    • Lee, J.J.1
  • 35
    • 84981335394 scopus 로고    scopus 로고
    • SETD2: An epigenetic modifier with tumor suppressor functionality
    • May 14
    • Li J, et al. (May 14, 2016) SETD2: An epigenetic modifier with tumor suppressor functionality. Oncotarget, 10.18632/oncotarget.9368.
    • (2016) Oncotarget
    • Li, J.1
  • 37
    • 84940913853 scopus 로고    scopus 로고
    • SETD2 histone modifier loss in aggressive GI stromal tumours
    • September 3
    • Huang KK, et al. (September 3, 2015) SETD2 histone modifier loss in aggressive GI stromal tumours. Gut, 10.1136/gutjnl-2015-309482.
    • (2015) Gut
    • Huang, K.K.1
  • 38
    • 84888353882 scopus 로고    scopus 로고
    • Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas
    • Jiao Y, et al. (2013) Exome sequencing identifies frequent inactivating mutations in BAP1, ARID1A and PBRM1 in intrahepatic cholangiocarcinomas. Nat Genet 45(12):1470-1473.
    • (2013) Nat Genet , vol.45 , Issue.12 , pp. 1470-1473
    • Jiao, Y.1
  • 39
    • 84892385994 scopus 로고    scopus 로고
    • CARMA: CARM1 methylation of SWI/SNF in breast cancer
    • Wang X, Roberts CW (2014) CARMA: CARM1 methylation of SWI/SNF in breast cancer. Cancer Cell 25(1):3-4.
    • (2014) Cancer Cell , vol.25 , Issue.1 , pp. 3-4
    • Wang, X.1    Roberts, C.W.2
  • 40
    • 85012994869 scopus 로고    scopus 로고
    • Low PBRM1 identifies tumor progression and poor prognosis in breast cancer
    • Mo D, et al. (2015) Low PBRM1 identifies tumor progression and poor prognosis in breast cancer. Int J Clin Exp Pathol 8(8):9307-9313.
    • (2015) Int J Clin Exp Pathol , vol.8 , Issue.8 , pp. 9307-9313
    • Mo, D.1
  • 41
    • 83255184470 scopus 로고    scopus 로고
    • Identification of a core member of the SWI/SNF complex, BAF155/SMARCC1, as a human tumor suppressor gene
    • Del Bove J, et al. (2011) Identification of a core member of the SWI/SNF complex, BAF155/SMARCC1, as a human tumor suppressor gene. Epigenetics 6(12):1444-1453.
    • (2011) Epigenetics , vol.6 , Issue.12 , pp. 1444-1453
    • Del Bove, J.1
  • 42
    • 84933576305 scopus 로고    scopus 로고
    • Minimal asbestos exposure in germline BAP1 heterozygous mice is associated with deregulated inflammatory response and increased risk of mesothelioma
    • Napolitano A, et al. (2016) Minimal asbestos exposure in germline BAP1 heterozygous mice is associated with deregulated inflammatory response and increased risk of mesothelioma. Oncogene 35(15):1996-2002.
    • (2016) Oncogene , vol.35 , Issue.15 , pp. 1996-2002
    • Napolitano, A.1
  • 43
    • 84915822435 scopus 로고    scopus 로고
    • Bap1 is essential for kidney function and cooperates with Vhl in renal tumorigenesis
    • Wang SS, et al. (2014) Bap1 is essential for kidney function and cooperates with Vhl in renal tumorigenesis. Proc Natl Acad Sci USA 111(46):16538-16543.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.46 , pp. 16538-16543
    • Wang, S.S.1
  • 44
    • 84982253941 scopus 로고    scopus 로고
    • Analysis of protein-coding genetic variation in 60, 706 humans
    • Lek M, et al.; Exome Aggregation Consortium (2016) Analysis of protein-coding genetic variation in 60, 706 humans. Nature 536(7616):285-291.
    • (2016) Nature , vol.536 , Issue.7616 , pp. 285-291
    • Exome Aggregation Consortium1    Lek, M.2
  • 45
    • 80054885219 scopus 로고    scopus 로고
    • Malignant mesothelioma: Facts, myths, and hypotheses
    • Carbone M, et al. (2012) Malignant mesothelioma: Facts, myths, and hypotheses. J Cell Physiol 227(1):44-58.
    • (2012) J Cell Physiol , vol.227 , Issue.1 , pp. 44-58
    • Carbone, M.1
  • 46
    • 84875446642 scopus 로고    scopus 로고
    • BAP1 and cancer
    • Carbone M, et al. (2013) BAP1 and cancer. Nat Rev Cancer 13(3):153-159.
    • (2013) Nat Rev Cancer , vol.13 , Issue.3 , pp. 153-159
    • Carbone, M.1
  • 47
    • 84897050302 scopus 로고    scopus 로고
    • BAF180 promotes cohesion and prevents genome instability and aneuploidy
    • Brownlee PM, Chambers AL, Cloney R, Bianchi A, Downs JA (2014) BAF180 promotes cohesion and prevents genome instability and aneuploidy. Cell Reports 6(6):973-981.
    • (2014) Cell Reports , vol.6 , Issue.6 , pp. 973-981
    • Brownlee, P.M.1    Chambers, A.L.2    Cloney, R.3    Bianchi, A.4    Downs, J.A.5
  • 48
    • 84915817103 scopus 로고    scopus 로고
    • 50th anniversary of the Declaration of Helsinki: The double standard was introduced
    • Hellmann F, Verdi M, Schlemper BR, Jr, Caponi S (2014) 50th anniversary of the Declaration of Helsinki: The double standard was introduced. Arch Med Res 45(7):600-601.
    • (2014) Arch Med Res , vol.45 , Issue.7 , pp. 600-601
    • Hellmann, F.1    Verdi, M.2    Schlemper, B.R.3    Caponi, S.4


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