-
2
-
-
45449099480
-
Scientific workflow: a survey and research directions
-
Springer-Verlag Berlin Heidelberg pp. 746–753
-
Barker, A., Van Hemertn, J., Scientific workflow: a survey and research directions. Parallel Processing and Applied Mathematics, Lecture Notes in Computer Science (LNCS) 4967, 2008, Springer-Verlag, Berlin Heidelberg pp. 746–753.
-
(2008)
Parallel Processing and Applied Mathematics, Lecture Notes in Computer Science (LNCS) 4967
-
-
Barker, A.1
Van Hemertn, J.2
-
3
-
-
79952106791
-
From zero to hero-design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production
-
Becker, J., Zelder, O., Häfner, S., Schröder, H., Wittmann, C., From zero to hero-design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production. Metab. Eng. 13 (2011), 159–168.
-
(2011)
Metab. Eng.
, vol.13
, pp. 159-168
-
-
Becker, J.1
Zelder, O.2
Häfner, S.3
Schröder, H.4
Wittmann, C.5
-
4
-
-
85012688561
-
Dynamic Programming
-
Princeton University Press
-
Bellman, R.E., Dynamic Programming. 1957, Princeton University Press.
-
(1957)
-
-
Bellman, R.E.1
-
5
-
-
78651076564
-
KNIME—the Konstanz information miner: version 2.0 and beyond
-
Berthold, M.R., Cebron, N., Dill, F., Gabriel, T.R., Kötter, T., Meinl, T., Ohl, P., Thiel, K., Wiswedel, B., KNIME—the Konstanz information miner: version 2.0 and beyond. ACM SIGKDD Explor. Newsl. 11 (2009), 26–31.
-
(2009)
ACM SIGKDD Explor. Newsl.
, vol.11
, pp. 26-31
-
-
Berthold, M.R.1
Cebron, N.2
Dill, F.3
Gabriel, T.R.4
Kötter, T.5
Meinl, T.6
Ohl, P.7
Thiel, K.8
Wiswedel, B.9
-
6
-
-
84883173541
-
13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis
-
13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis. Chem. Biol. 20 (2013), 1012–1021.
-
(2013)
Chem. Biol.
, vol.20
, pp. 1012-1021
-
-
Beste, D.J.1
Nöh, K.2
Niedenführ, S.3
Mendum, T.A.4
Hawkins, N.D.5
Ward, J.L.6
Beale, M.H.7
Wiechert, W.8
McFadden, J.9
-
7
-
-
33644585432
-
Apache Cookbook
-
nd ed. O'Reilly & Associates, Inc.
-
nd ed., 2008, O'Reilly & Associates, Inc.
-
(2008)
-
-
Bowen, R.1
Coar, K.2
-
8
-
-
84923596826
-
13C metabolite labeling patterns from cells
-
13C metabolite labeling patterns from cells. Curr. Opin. Biotechnol. 34 (2015), 189–201.
-
(2015)
Curr. Opin. Biotechnol.
, vol.34
, pp. 189-201
-
-
Buescher, J.M.1
Antoniewicz, M.R.2
Boros, L.G.3
Burgess, S.C.4
Brunengraber, H.5
Clish, C.B.6
DeBerardinis, R.J.7
Feron, O.8
Frezza, C.9
Ghesquiere, B.10
Gottlieb, E.11
Hiller, K.12
Jones, R.G.13
Kamphorst, J.J.14
Kibbey, R.G.15
Kimmelman, A.C.16
Locasale, J.W.17
Lunt, S.Y.18
Maddocks, O.D.19
Malloy, C.20
Metallo, C.M.21
Meuillet, E.J.22
Munger, J.23
Nöh, K.24
Rabinowitz, J.D.25
Ralser, M.26
Sauer, U.27
Stephanopoulos, G.28
St-Pierre, J.29
Tennant, D.A.30
Wittmann, C.31
Vander Heiden, M.G.32
Vazquez, A.33
Vousden, K.34
Young, J.D.35
Zamboni, N.36
Fendt, S.-M.37
more..
-
9
-
-
84891585028
-
Cloud computing: principles and paradigms
-
John Wiley & Sons
-
Buyya, R., Broberg, J., Goscinski, A.M., Cloud computing: principles and paradigms. Wiley Series on Parallel and Distributed Computing, 2011, John Wiley & Sons.
-
(2011)
Wiley Series on Parallel and Distributed Computing
-
-
Buyya, R.1
Broberg, J.2
Goscinski, A.M.3
-
10
-
-
77950510658
-
Professional Apache Tomcat 6
-
John Wiley & Sons
-
Chopra, V., Li, S., Genender, J., Professional Apache Tomcat 6. Wrox Professional Guides, 2007, John Wiley & Sons.
-
(2007)
Wrox Professional Guides
-
-
Chopra, V.1
Li, S.2
Genender, J.3
-
11
-
-
79951957782
-
A lightweight, flow-based toolkit for parallel and distributed bioinformatics piplines
-
Cieslik, M., Mura, C., A lightweight, flow-based toolkit for parallel and distributed bioinformatics piplines. BMC Bioinformatics, 12, 2011, 61.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 61
-
-
Cieslik, M.1
Mura, C.2
-
12
-
-
84922646316
-
Python and HDF5
-
O'Reilly Media
-
Collette, A., Python and HDF5. 2013, O'Reilly Media.
-
(2013)
-
-
Collette, A.1
-
15
-
-
84884526984
-
13C metabolic flux analysis studies: a review and future perspectives
-
13C metabolic flux analysis studies: a review and future perspectives. Metab. Eng. 20 (2013), 42–48.
-
(2013)
Metab. Eng.
, vol.20
, pp. 42-48
-
-
Crown, S.B.1
Antoniewicz, M.R.2
-
16
-
-
78650760428
-
Scientific workflow systems-can one size fit all?
-
pp. 1–9
-
Curcin, V., Ghanem, M., Scientific workflow systems-can one size fit all?. Biomedical Engineering Conference 2008, CIBEC 2008, Cairo International, 2008 pp. 1–9.
-
(2008)
Biomedical Engineering Conference 2008, CIBEC 2008, Cairo International
-
-
Curcin, V.1
Ghanem, M.2
-
20
-
-
77950630496
-
From fluxes and isotope labeling patterns towards in silico cells
-
Dauner, M., From fluxes and isotope labeling patterns towards in silico cells. Curr. Opin. Biotechnol. 21 (2010), 55–62.
-
(2010)
Curr. Opin. Biotechnol.
, vol.21
, pp. 55-62
-
-
Dauner, M.1
-
21
-
-
84870237261
-
Cloud MapReduce for Monte Carlo bootstrap applied to metabolic flux analysis
-
Dalman, T., Dörnemann, T., Juhnke, E., Weitzel, M., Nöh, K., Wiechert, W., Freisleben, B., Cloud MapReduce for Monte Carlo bootstrap applied to metabolic flux analysis. Futur. Gener. Comput. Sci. 29 (2013), 582–590.
-
(2013)
Futur. Gener. Comput. Sci.
, vol.29
, pp. 582-590
-
-
Dalman, T.1
Dörnemann, T.2
Juhnke, E.3
Weitzel, M.4
Nöh, K.5
Wiechert, W.6
Freisleben, B.7
-
22
-
-
57149126952
-
Provenance and scientific workflows: challenges and opportunities
-
pp. 1345–1350
-
Davidson, S.B., Freire, J., Provenance and scientific workflows: challenges and opportunities. Proceedings of ACM SIGMOD, 2008 pp. 1345–1350.
-
(2008)
Proceedings of ACM SIGMOD
-
-
Davidson, S.B.1
Freire, J.2
-
23
-
-
85030321143
-
MapReduce: simplified data processing on large clusters
-
pp. 107–113
-
th Conference on Symposium on Operating Systems Design & Implementation (OSDI'04), USENIX Association, Berkeley, CA, USA, 2004 pp. 107–113.
-
(2004)
th Conference on Symposium on Operating Systems Design & Implementation (OSDI'04), USENIX Association, Berkeley, CA, USA
-
-
Dean, J.1
Ghemawat, S.2
-
24
-
-
59849095285
-
Workflows and e-science: an overview of workflow system features and capabilities
-
Deelman, E., Gannon, D., Shields, M., Taylor, I., Workflows and e-science: an overview of workflow system features and capabilities. Futur. Gener. Comput. Syst. 25 (2009), 528–540.
-
(2009)
Futur. Gener. Comput. Syst.
, vol.25
, pp. 528-540
-
-
Deelman, E.1
Gannon, D.2
Shields, M.3
Taylor, I.4
-
26
-
-
38349022975
-
Grid workflow modelling using grid-specific BPEL extensions
-
pp. 1–9
-
Dörnemann, T., Friese, T., Herdt, S., Juhnke, E., Freisleben, B., Grid workflow modelling using grid-specific BPEL extensions. Proceedings of German E-Science Conference 2007, 2007 pp. 1–9.
-
(2007)
Proceedings of German E-Science Conference 2007
-
-
Dörnemann, T.1
Friese, T.2
Herdt, S.3
Juhnke, E.4
Freisleben, B.5
-
27
-
-
85015538128
-
Flux-P: automating metabolic flux analysis
-
Ebert, B.E., Lamprecht, A.-L., Steffen, B., Blank, L.M., Flux-P: automating metabolic flux analysis. Metabolites 2 (2012), 872–890.
-
(2012)
Metabolites
, vol.2
, pp. 872-890
-
-
Ebert, B.E.1
Lamprecht, A.-L.2
Steffen, B.3
Blank, L.M.4
-
28
-
-
0003991665
-
An Introduction to the Bootstrap
-
Chapman & Hall/CRC
-
Efron, B., Tibshirani, R.J., An Introduction to the Bootstrap. 1993, Chapman & Hall/CRC.
-
(1993)
-
-
Efron, B.1
Tibshirani, R.J.2
-
29
-
-
4644300495
-
Service-Oriented Architecture: A Field Guide to Integrating XML and Web Services
-
Prentice Hall PTR
-
Erl, T., Service-Oriented Architecture: A Field Guide to Integrating XML and Web Services. 2004, Prentice Hall PTR.
-
(2004)
-
-
Erl, T.1
-
30
-
-
84861801113
-
Biomine: predicting links between biological entities using network models of heterogeneous databases
-
Eronen, L., Toivonen, H., Biomine: predicting links between biological entities using network models of heterogeneous databases. BMC Bioinformatics 13 (2012), 1–21.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 1-21
-
-
Eronen, L.1
Toivonen, H.2
-
31
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks, J., Nekrutenko, A., Taylor, J., Team, T.G., Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, 2010, R86.
-
(2010)
Genome Biol.
, vol.11
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
Team, T.G.4
-
33
-
-
84903164690
-
A novel platform for automated high-throughput fluxome profiling of metabolic variants
-
Heux, S., Poinot, J., Massou, S., Sokol, S., Portais, J.-C., A novel platform for automated high-throughput fluxome profiling of metabolic variants. Metab. Eng. 25 (2014), 8–19.
-
(2014)
Metab. Eng.
, vol.25
, pp. 8-19
-
-
Heux, S.1
Poinot, J.2
Massou, S.3
Sokol, S.4
Portais, J.-C.5
-
34
-
-
84891116817
-
ZeroMQ: Messaging for Many Applications
-
O'Reilly Media
-
Hintjens, P., ZeroMQ: Messaging for Many Applications. 2013, O'Reilly Media.
-
(2013)
-
-
Hintjens, P.1
-
35
-
-
33747833111
-
Taverna: a tool for building and running workflows of services
-
Hull, D., Wolstencroft, K., Stevens, R., Goble, C., Pocock, M.R., Li, P., Oinn, T., Taverna: a tool for building and running workflows of services. Nucleic Acids Res. 34 (2006), W729–W732.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W729-W732
-
-
Hull, D.1
Wolstencroft, K.2
Stevens, R.3
Goble, C.4
Pocock, M.R.5
Li, P.6
Oinn, T.7
-
36
-
-
79959206279
-
JBoss in Action: Configuring the JBoss Application Server
-
Manning Publications Co.
-
Jamae, J., Johnson, P., JBoss in Action: Configuring the JBoss Application Server. 2009, Manning Publications Co.
-
(2009)
-
-
Jamae, J.1
Johnson, P.2
-
38
-
-
33748057502
-
Exploiting the bootstrap method for quantifying parameter confidence intervals in dynamical systems
-
Joshi, M., Seidel-Morgenstern, A., Kremling, A., Exploiting the bootstrap method for quantifying parameter confidence intervals in dynamical systems. Metab. Eng. 8 (2006), 447–455.
-
(2006)
Metab. Eng.
, vol.8
, pp. 447-455
-
-
Joshi, M.1
Seidel-Morgenstern, A.2
Kremling, A.3
-
39
-
-
46449091568
-
SOA in Practice: The art of distributed system design
-
O'Reilly Media
-
Josuttis, N.M., SOA in Practice: The art of distributed system design. 2007, O'Reilly Media.
-
(2007)
-
-
Josuttis, N.M.1
-
40
-
-
78651350373
-
Scientific workflows and clouds
-
Juve, G., Deelman, E., Scientific workflows and clouds. Crossroads 16 (2010), 14–18.
-
(2010)
Crossroads
, vol.16
, pp. 14-18
-
-
Juve, G.1
Deelman, E.2
-
41
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa, M., Goto, S., KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28 (2000), 27–30.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
42
-
-
84897366826
-
MeltDB 2.0—advances of the metabolomics software system
-
Kessler, N., Neuweger, H., Bonte, A., Langenkämper, G., Niehaus, K., Nattkemper, T.W., Goesmann, A., MeltDB 2.0—advances of the metabolomics software system. Bioinformatics 29 (2013), 2452–2459.
-
(2013)
Bioinformatics
, vol.29
, pp. 2452-2459
-
-
Kessler, N.1
Neuweger, H.2
Bonte, A.3
Langenkämper, G.4
Niehaus, K.5
Nattkemper, T.W.6
Goesmann, A.7
-
43
-
-
72849140117
-
Design and evaluation of Opal 2: a toolkit for scientific software as a service
-
Krishnan, S., Clementi, L., Ren, J., Papadopoulos, P., Li, W., Design and evaluation of Opal 2: a toolkit for scientific software as a service. IEEE Congress on Services (SERVICES-1 2009), 2009, 709–716.
-
(2009)
IEEE Congress on Services (SERVICES-1 2009)
, pp. 709-716
-
-
Krishnan, S.1
Clementi, L.2
Ren, J.3
Papadopoulos, P.4
Li, W.5
-
44
-
-
85031960475
-
-
Blank, L.M. (Eds.), 2014. Metabolic Flux Analysis, Methods in Molecular Biology. New York, NY.
-
Krömer, J.O., Nielsen, L.K., Blank, L.M. (Eds.), 2014. Metabolic Flux Analysis, Methods in Molecular Biology. New York, NY.
-
-
-
Krömer, J.O.1
Nielsen, L.K.2
-
46
-
-
70449449024
-
Bio-jETI: a framework for semantics-based service composition
-
Lamprecht, A.-L., Margaria, T., Steffen, B., Bio-jETI: a framework for semantics-based service composition. BMC Bioinformatics, 10, 2009, S8.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. S8
-
-
Lamprecht, A.-L.1
Margaria, T.2
Steffen, B.3
-
47
-
-
28644433993
-
Minimum information requested in the annotation of biochemical models (MIRIAM)
-
Le Novère, N., Finney, A., Hucka, M., Bhalla, U.S., Campagne, F., Collado-Vides, J., Crampin, E.J., Halstead, M., Klipp, E., Mendes, P., Nielsen, P., Sauro, H., Shapiro, B., Snoep, J.L., Spence, H.D., Wanner, B.L., Minimum information requested in the annotation of biochemical models (MIRIAM). Nat. Biotechnol. 23 (2005), 1509–1515.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1509-1515
-
-
Le Novère, N.1
Finney, A.2
Hucka, M.3
Bhalla, U.S.4
Campagne, F.5
Collado-Vides, J.6
Crampin, E.J.7
Halstead, M.8
Klipp, E.9
Mendes, P.10
Nielsen, P.11
Sauro, H.12
Shapiro, B.13
Snoep, J.L.14
Spence, H.D.15
Wanner, B.L.16
-
48
-
-
84927711563
-
Fluxome study of Pseudomonas fluorescens reveals major reorganisation of carbon flux through central metabolic pathways in response to inactivation of the anti-sigma factor MucA
-
Lien, S.K., Niedenführ, S., Sletta, H., Nöh, K., Bruheim, P., Fluxome study of Pseudomonas fluorescens reveals major reorganisation of carbon flux through central metabolic pathways in response to inactivation of the anti-sigma factor MucA. BMC Syst. Biol. 9 (2015), 1–14.
-
(2015)
BMC Syst. Biol.
, vol.9
, pp. 1-14
-
-
Lien, S.K.1
Niedenführ, S.2
Sletta, H.3
Nöh, K.4
Bruheim, P.5
-
49
-
-
33646040949
-
Scientific workflow management and the Kepler system
-
Ludäscher, B., Altintas, I., Berkley, C., Higgins, D., Jaeger, E., Jones, M., Lee, E.A., Tao, J., Zhao, Y., Scientific workflow management and the Kepler system. Concurr. Comput. Pract. Exp. 18 (2006), 1039–1065.
-
(2006)
Concurr. Comput. Pract. Exp.
, vol.18
, pp. 1039-1065
-
-
Ludäscher, B.1
Altintas, I.2
Berkley, C.3
Higgins, D.4
Jaeger, E.5
Jones, M.6
Lee, E.A.7
Tao, J.8
Zhao, Y.9
-
50
-
-
79952606233
-
Addressing parameter identifiability by model-based experimentation
-
Maiwald, T., Timmer, J., Kreutz, C., Klingmüller, U., Raue, A., Addressing parameter identifiability by model-based experimentation. IET Syst. Biol. 5 (2011), 120–130.
-
(2011)
IET Syst. Biol.
, vol.5
, pp. 120-130
-
-
Maiwald, T.1
Timmer, J.2
Kreutz, C.3
Klingmüller, U.4
Raue, A.5
-
51
-
-
77949516139
-
JORCA: easily integrating bioinformatics web services
-
Martin-Requena, V., Rios, J., Garcia, M., Ramirez, S., Trelles, O., JORCA: easily integrating bioinformatics web services. Bioinformatics 26 (2010), 553–559.
-
(2010)
Bioinformatics
, vol.26
, pp. 553-559
-
-
Martin-Requena, V.1
Rios, J.2
Garcia, M.3
Ramirez, S.4
Trelles, O.5
-
52
-
-
77955037242
-
Taverna, reloaded, In: Lecture Notes in Computer Science (including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp
-
Missier, P., Soiland-Reyes, S., Owen, S., Tan, W., Nenadic, A., Dunlop, I., Williams, A., Oinn, T., Goble, C., 2010. Taverna, reloaded, In: Lecture Notes in Computer Science (including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 471–481.
-
(2010)
, pp. 471-481
-
-
Missier, P.1
Soiland-Reyes, S.2
Owen, S.3
Tan, W.4
Nenadic, A.5
Dunlop, I.6
Williams, A.7
Oinn, T.8
Goble, C.9
-
53
-
-
79952319218
-
LabKey server: an open source platform for scientific data integration, analysis and collaboration
-
Nelson, E.K., Piehler, B., Eckels, J., Rauch, A., Bellew, M., Hussey, P., Ramsay, S., Nathe, C., Lum, K., Krouse, K., Stearns, D., Connolly, B., Skillman, T., Igra, M., LabKey server: an open source platform for scientific data integration, analysis and collaboration. BMC Bioinformatics, 12, 2011, 71.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 71
-
-
Nelson, E.K.1
Piehler, B.2
Eckels, J.3
Rauch, A.4
Bellew, M.5
Hussey, P.6
Ramsay, S.7
Nathe, C.8
Lum, K.9
Krouse, K.10
Stearns, D.11
Connolly, B.12
Skillman, T.13
Igra, M.14
-
54
-
-
56649102388
-
MeltDB: a software platform for the analysis and integration of metabolomics experiment data
-
Neuweger, H., Albaum, S.P., Dondrup, M., Persicke, M., Watt, T., Niehaus, K., Stoye, J., Goesmann, A., MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinformatics 24 (2008), 2726–2732.
-
(2008)
Bioinformatics
, vol.24
, pp. 2726-2732
-
-
Neuweger, H.1
Albaum, S.P.2
Dondrup, M.3
Persicke, M.4
Watt, T.5
Niehaus, K.6
Stoye, J.7
Goesmann, A.8
-
56
-
-
77950628238
-
Metabolic flux analysis in eukaryotes
-
Niklas, J., Schneider, K., Heinzle, E., Metabolic flux analysis in eukaryotes. Curr. Opin. Biotechnol. 21 (2010), 63–69.
-
(2010)
Curr. Opin. Biotechnol.
, vol.21
, pp. 63-69
-
-
Niklas, J.1
Schneider, K.2
Heinzle, E.3
-
59
-
-
84893549385
-
PostgreSQL: Up and Running: A Practical Introduction to the Advanced Open Source Database
-
O'Reilly Media
-
Obe, R.O., Hsu, L.S., PostgreSQL: Up and Running: A Practical Introduction to the Advanced Open Source Database. 2014, O'Reilly Media.
-
(2014)
-
-
Obe, R.O.1
Hsu, L.S.2
-
60
-
-
84855653426
-
An Introduction to Parallel Programming
-
Morgan Kaufman
-
Pacheco, P.S., An Introduction to Parallel Programming. 2011, Morgan Kaufman.
-
(2011)
-
-
Pacheco, P.S.1
-
61
-
-
57349143695
-
Amazon S3 for science grids: a viable solution?
-
pp. 55–64
-
Palankar, M.R., Iamnitchi, A., Ripeanu, M., Garfinkel, S., Amazon S3 for science grids: a viable solution?. In: Proceedings of the 2008 International Workshop on Data-Aware Distributed Computing (DADC '08), ACM, 2008 pp. 55–64.
-
(2008)
In: Proceedings of the 2008 International Workshop on Data-Aware Distributed Computing (DADC '08), ACM
-
-
Palankar, M.R.1
Iamnitchi, A.2
Ripeanu, M.3
Garfinkel, S.4
-
62
-
-
66749140138
-
ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis
-
Pitkänen, E., Akerlund, A., Rantanen, A., Jouhten, P., Ukkonen, E., ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis. J. Integr. Bioinform., 2008, 5.
-
(2008)
J. Integr. Bioinform.
, pp. 5
-
-
Pitkänen, E.1
Akerlund, A.2
Rantanen, A.3
Jouhten, P.4
Ukkonen, E.5
-
64
-
-
79954459893
-
Construction of an E. coli genome-scale atom mapping model for MFA calculations
-
Ravikirthi, P., Suthers, P.F., Maranas, C.D., Construction of an E. coli genome-scale atom mapping model for MFA calculations. Biotechnol. Bioeng. 108 (2011), 1372–1382.
-
(2011)
Biotechnol. Bioeng.
, vol.108
, pp. 1372-1382
-
-
Ravikirthi, P.1
Suthers, P.F.2
Maranas, C.D.3
-
65
-
-
38049150833
-
Automation of in-silico data analysis processes through workflow management systems
-
Romano, P., Automation of in-silico data analysis processes through workflow management systems. Brief. Bioinform. 9 (2008), 57–68.
-
(2008)
Brief. Bioinform.
, vol.9
, pp. 57-68
-
-
Romano, P.1
-
67
-
-
85031950005
-
Design and implementation of a database and security middleware for a scientific workflow system (in german)
-
University of Siegen
-
Runkel, J., Design and implementation of a database and security middleware for a scientific workflow system (in german). Master thesis, 2009, University of Siegen.
-
(2009)
Master thesis
-
-
Runkel, J.1
-
68
-
-
84869087655
-
Tav4SB: integrating tools for analysis of kinetic models of biological systems
-
Rybiński, M., Lula, M., Banasik, P., Lasota, S., Gambin, A., Tav4SB: integrating tools for analysis of kinetic models of biological systems. BMC Syst. Biol., 6, 2012, 25.
-
(2012)
BMC Syst. Biol.
, vol.6
, pp. 25
-
-
Rybiński, M.1
Lula, M.2
Banasik, P.3
Lasota, S.4
Gambin, A.5
-
69
-
-
33846061120
-
13C-based flux analysis
-
13C-based flux analysis. Mol. Syst. Biol., 2, 2006, 62.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 62
-
-
Sauer, U.1
-
70
-
-
53649107567
-
From biomarkers to integrated network responses
-
Sauer, U., Zamboni, N., From biomarkers to integrated network responses. Nat. Biotechnol. 26 (2008), 1090–1092.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1090-1092
-
-
Sauer, U.1
Zamboni, N.2
-
71
-
-
0033080396
-
Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering
-
Schuster, S., Dandekar, T., Fell, D.A., Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. Trends Biotechnol. 17 (1999), 53–60.
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 53-60
-
-
Schuster, S.1
Dandekar, T.2
Fell, D.A.3
-
72
-
-
84936163408
-
Quantitative multilevel analysis of central metabolism in developing oilseeds of oilseed rape during in vitro culture
-
Schwender, J., Hebbelmann, I., Heinzel, N., Hildebrandt, T., Rogers, A., Naik, D., Klapperstück, M., Braun, H.-P., Schreiber, F., Denolf, P., Borisjuk, L., Rolletschek, H., Quantitative multilevel analysis of central metabolism in developing oilseeds of oilseed rape during in vitro culture. Plant Physiol. 168 (2015), 828–848.
-
(2015)
Plant Physiol.
, vol.168
, pp. 828-848
-
-
Schwender, J.1
Hebbelmann, I.2
Heinzel, N.3
Hildebrandt, T.4
Rogers, A.5
Naik, D.6
Klapperstück, M.7
Braun, H.-P.8
Schreiber, F.9
Denolf, P.10
Borisjuk, L.11
Rolletschek, H.12
-
73
-
-
67650320621
-
Soaplab2: more reliable Sesame door to bioinformatics programs
-
Senger, M., Rice, P., Bleasby, A., Oinn, T., Uludag, M., Soaplab2: more reliable Sesame door to bioinformatics programs. 9th Annu. Bioinforma. Open Source Conf., 2008 http://soaplab.sourceforge.net/soaplab2.
-
(2008)
9th Annu. Bioinforma. Open Source Conf.
-
-
Senger, M.1
Rice, P.2
Bleasby, A.3
Oinn, T.4
Uludag, M.5
-
74
-
-
85056531555
-
Scientific Data Management: Challenges, Technology and Deployment
-
Chapman & Hall/CRC
-
Shoshani, A., Rotem, D., Scientific Data Management: Challenges, Technology and Deployment. 2009, Chapman & Hall/CRC.
-
(2009)
-
-
Shoshani, A.1
Rotem, D.2
-
75
-
-
84857845281
-
influx_s: increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments
-
Sokol, S., Millard, P., Portais, J.-C., influx_s: increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments. Bioinformatics 28 (2012), 687–693.
-
(2012)
Bioinformatics
, vol.28
, pp. 687-693
-
-
Sokol, S.1
Millard, P.2
Portais, J.-C.3
-
76
-
-
12244298643
-
1H] nuclear magnetic resonance, and comprehensive isotopomer balancing
-
1H] nuclear magnetic resonance, and comprehensive isotopomer balancing. Plant Physiol. 136 (2004), 3043–3057.
-
(2004)
Plant Physiol.
, vol.136
, pp. 3043-3057
-
-
Sriram, G.1
Fulton, D.B.2
Iyer, V.V.3
Peterson, J.M.4
Zhou, R.5
Westgate, M.E.6
Spalding, M.H.7
Shanks, J.V.8
-
77
-
-
0032600888
-
Metabolic fluxes and metabolic engineering
-
Stephanopoulos, G., Metabolic fluxes and metabolic engineering. Metab. Eng. 1 (1999), 1–11.
-
(1999)
Metab. Eng.
, vol.1
, pp. 1-11
-
-
Stephanopoulos, G.1
-
78
-
-
84953247788
-
Python for Scientists
-
Cambridge University Press
-
Stewart, J.M., Python for Scientists. 2014, Cambridge University Press.
-
(2014)
-
-
Stewart, J.M.1
-
79
-
-
77953385611
-
A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid
-
Tan, W., Missier, P., Foster, I., Madduri, R., De Roure, D., Goble, C., A comparison of using Taverna and BPEL in building scientific workflows: the case of caGrid. Concurr. Comput. Pract. Exp. 22 (2010), 1098–1117.
-
(2010)
Concurr. Comput. Pract. Exp.
, vol.22
, pp. 1098-1117
-
-
Tan, W.1
Missier, P.2
Foster, I.3
Madduri, R.4
De Roure, D.5
Goble, C.6
-
81
-
-
33750345305
-
Minimum reporting requirements for proteomics: a MIAPE primer
-
Taylor, C.F., Minimum reporting requirements for proteomics: a MIAPE primer. Proteomics 1 (2006), 39–44.
-
(2006)
Proteomics
, vol.1
, pp. 39-44
-
-
Taylor, C.F.1
-
82
-
-
84892335166
-
Workflows for e-science: scientific workflows for grids
-
Springer New York
-
Taylor, I.J., Deelman, E., Gannon, D.B., Shields, M., Workflows for e-science: scientific workflows for grids. 2006, Springer, New York.
-
(2006)
-
-
Taylor, I.J.1
Deelman, E.2
Gannon, D.B.3
Shields, M.4
-
83
-
-
79955570036
-
Minimum information about a simulation experiment (MIASE)
-
Waltemath, D., Adams, R., Beard, D.A., Bergmann, F.T., Bhalla, U.S., Britten, R., Chelliah, V., Cooling, M.T., Cooper, J., Crampin, E.J., Garny, A., Hoops, S., Hucka, M., Hunter, P., Klipp, E., Laibe, C., Miller, A.K., Moraru, I., Nickerson, D., Nielsen, P., Nikolski, M., Sahle, S., Sauro, H.M., Schmidt, H., Snoep, J.L., Tolle, D., Wolkenhauer, O., le Novère, N., Minimum information about a simulation experiment (MIASE). PLoS Comput. Biol. 7 (2011), 5–8.
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. 5-8
-
-
Waltemath, D.1
Adams, R.2
Beard, D.A.3
Bergmann, F.T.4
Bhalla, U.S.5
Britten, R.6
Chelliah, V.7
Cooling, M.T.8
Cooper, J.9
Crampin, E.J.10
Garny, A.11
Hoops, S.12
Hucka, M.13
Hunter, P.14
Klipp, E.15
Laibe, C.16
Miller, A.K.17
Moraru, I.18
Nickerson, D.19
Nielsen, P.20
Nikolski, M.21
Sahle, S.22
Sauro, H.M.23
Schmidt, H.24
Snoep, J.L.25
Tolle, D.26
Wolkenhauer, O.27
le Novère, N.28
more..
-
85
-
-
74049113467
-
Hadoop: The Definitive Guide
-
st ed. O'Reilly Media
-
st ed., 2009, O'Reilly Media.
-
(2009)
-
-
White, T.1
-
86
-
-
0034741983
-
13C metabolic flux analysis
-
13C metabolic flux analysis. Metab. Eng. 3 (2001), 195–206.
-
(2001)
Metab. Eng.
, vol.3
, pp. 195-206
-
-
Wiechert, W.1
-
88
-
-
84887626505
-
Isotopically non-stationary metabolic flux analysis: complex yet highly informative
-
Wiechert, W., Nöh, K., Isotopically non-stationary metabolic flux analysis: complex yet highly informative. Curr. Opin. Biotechnol. 24 (2013), 979–986.
-
(2013)
Curr. Opin. Biotechnol.
, vol.24
, pp. 979-986
-
-
Wiechert, W.1
Nöh, K.2
-
89
-
-
84880778478
-
13C based metabolic flux analysis: fundamentals and practice
-
H.S. Alper Humana Press pp. 297–334
-
13C based metabolic flux analysis: fundamentals and practice. Alper, H.S., (eds.) Methods in Molecular Biology: Systems Metabolic Engineering, 2013, Humana Press pp. 297–334.
-
(2013)
Methods in Molecular Biology: Systems Metabolic Engineering
-
-
Yang, T.H.1
-
90
-
-
51049091904
-
Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line
-
Yoo, H., Antoniewicz, M.R., Stephanopoulos, G., Kelleher, J.K., Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line. J. Biol. Chem. 283 (2008), 20621–20627.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 20621-20627
-
-
Yoo, H.1
Antoniewicz, M.R.2
Stephanopoulos, G.3
Kelleher, J.K.4
-
91
-
-
84899511589
-
INCA: a computational platform for isotopically non-stationary metabolic flux analysis
-
Young, J.D., INCA: a computational platform for isotopically non-stationary metabolic flux analysis. Bioinformatics 30 (2014), 1333–1335.
-
(2014)
Bioinformatics
, vol.30
, pp. 1333-1335
-
-
Young, J.D.1
-
92
-
-
79551508527
-
13C metabolic flux analysis in complex systems
-
13C metabolic flux analysis in complex systems. Curr. Opin. Biotechnol. 22 (2011), 103–108.
-
(2011)
Curr. Opin. Biotechnol.
, vol.22
, pp. 103-108
-
-
Zamboni, N.1
|