Stability, entrapment and variant formation of salmonella genomic island 1

PLoS ONE

Volumn 7, Issue 2, 2012, Pages

  Kiss, János ^a   Nagy, Béla ^b   Olasz, Ferenc ^a  

^a SZENT ISTVÁN UNIVERSITY   (Hungary)

^b Veterinary Medical Research Institute Hungarian Academy of Science   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL TRANSMISSION; BACTERIUM CONJUGATION; BACTERIUM ISOLATE; CONTROLLED STUDY; ESCHERICHIA COLI; GENE CLUSTER; GENE DELETION; GENE SEGREGATION; GENE TRANSFER; GENETIC ANALYSIS; GENETIC RECOMBINATION; GENETIC STABILITY; GENETIC VARIABILITY; GENOMIC ISLAND; HUNGARY; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; SALMONELLA TYPHIMURIUM; SEQUENCE HOMOLOGY; ANTIBIOTIC RESISTANCE; BINDING SITE; BIOLOGICAL MODEL; CHROMOSOME MAP; GENETICS; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; MULTIGENE FAMILY; OPEN READING FRAME; PHENOTYPE; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SALMONELLA ENTERICA;

SALMONELLA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM; SALMONELLA TYPHIMURIUM;

PRIMER DNA;

BASE SEQUENCE; BINDING SITES; CHROMOSOME MAPPING; DNA PRIMERS; DRUG RESISTANCE, BACTERIAL; GENE DELETION; GENETIC VARIATION; GENOMIC ISLANDS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; OPEN READING FRAMES; PHENOTYPE; PLASMIDS; POLYMERASE CHAIN REACTION; SALMONELLA ENTERICA;

EID: 84857618040     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0032497     Document Type: Article

References (42)

1. Threlfall EJ, (2000) Epidemic Salmonella Typhimurium DT104- a truly international multiresistant clone. J Antimicrob Chemother 46: 7-10.
2. Boyd D, Peters GA, Cloeckaert A Boumedine KS, Chaslus-Dancla E, et al. (2001) Complete nucleotide sequence of a 43-kilobase genomic island associated with the multidrug resistance region of Salmonella enterica serovar Typhimurium DT104 and its identification in phage type DT120 and serovar Agona. J Bacteriol 183: 5725-5732.
3. Boyd D, Cloeckaert A, Chaslus-Dancla E, Mulvey MR, (2002) Characterization of variant Salmonella genomic island 1 multidrug resistance regions from serovars Typhimurium DT104 and Agona. Antimicrob Agents Chemother 46: 1714-1722.
4. Levings RS, Djordjevic SP, Hall RM, (2008) SGI2, a relative of Salmonella genomic island SGI1 with an independent origin. Antimicrob Agents Chemother 52: 2529-2537.
5. Partridge SR, Hall RM, (2003) In34, a complex In5 family class 1 integron containing orf513 and dfrA10. Antimicrob Agents Chemother 47: 342-349.
6. Boyd DA, Peters GA, Ng L, Mulvey MR, (2000) Partial characterization of a genomic island associated with the multidrug resistance region of Salmonella enterica Typhimurium DT104. FEMS Microbiol Lett 189: 285-291.
7. Ahmed AM, Hussein AI, Shimamoto T, (2007) Proteus mirabilis clinical isolate harbouring a new variant of Salmonella genomic island 1 containing the multiple antibiotic resistance region. J Antimicrob Chemother 59: 184-190.
8. Boyd DA, Shi X, Hu QH, Ng LK, Doublet B, et al. (2008) Salmonella genomic island 1 (SGI1), variant SGI1-I, and new variant SGI1-O in Proteus mirabilis clinical and food isolates from China. Antimicrob Agents Chemother 52: 340-344.
9. Cloeckaert A, Praud K, Doublet B, Demartin M, Weill FX, (2006) Variant Salmonella genomic island 1-L antibiotic resistance gene cluster in Salmonella enterica serovar Newport. Antimicrob Agents Chemother 50: 3944-3946.
10. Doublet B, Lailler R, Meunier D, Brisabois A, Boyd D, et al. (2003) Variant Salmonella genomic island 1 antibiotic resistance gene cluster in Salmonella enterica serovar Albany. Emerg Infect Dis 9: 585-591.
11. Doublet B, Butaye P, Imberechts H, Boyd D, Mulvey MR, et al. (2004) Salmonella genomic island 1 multidrug resistance gene clusters in Salmonella enterica serovar Agona isolated in Belgium in 1992 to 2002. Antimicrob Agents Chemother 48: 2510-2517.
12. Doublet B, Weill FX, Fabre L, Chaslus-Dancla E, Cloeckaert A, (2004) Variant Salmonella genomic island 1 antibiotic resistance gene cluster containing a novel 3′-N-aminoglycoside acetyltransferase gene cassette, aac(3)-Id, in Salmonella enterica serovar newport. Antimicrob Agents Chemother 48: 3806-3812.
13. Doublet B, Praud K, Bertrand S, Collard JM, Weill FX, et al. (2008) Novel insertion sequence- and transposon-mediated genetic rearrangements in genomic island SGI1 of Salmonella enterica serovar Kentucky. Antimicrob Agents Chemother 52: 3745-3754.
14. Levings RS, Lightfoot D, Partridge SR, Hall RM, Djordjevic SP, (2005) The genomic island SGI1, containing the multiple antibiotic resistance region of Salmonella enterica serovar Typhimurium DT104 or variants of it, is widely distributed in other S. enterica serovars. J Bacteriol 187: 4401-4409.
15. Levings RS, Partridge SR, Djordjevic SP, Hall RM, (2007) SGI1-K, a variant of the SGI1 genomic island carrying a mercury resistance region, in Salmonella enterica serovar Kentucky. Antimicrob Agents Chemother 51: 317-323.
16. Vo AT, van Duijkeren E, Fluit AC, Gaastra W, (2007) A novel Salmonella genomic island 1 and rare integron types in Salmonella Typhimurium isolates from horses in The Netherlands. J Antimicrob Chemother 59: 594-599.
17. Siebor E, Neuwirth C, (2011) The new variant of Salmonella genomic island 1 (SGI1-V) from a Proteus mirabilis French clinical isolate harbours blaVEB-6 and qnrA1 in the multiple antibiotic resistance region. J Antimicrob Chemother 66: 2513-2520.
18. Mulvey MR, Boyd DA, Olson AB, Doublet B, Cloeckaert A, (2006) The genetics of Salmonella genomic island 1. Microbes Infect 8: 1915-1922.
19. Doublet B, Boyd D, Mulvey MR, Cloeckaert A, (2005) The Salmonella genomic island 1 is an integrative mobilizable element. Mol Microbiol 55: 1911-1924.
20. Douard G, Praud K, Cloeckaert A, Doublet B, (2010) The Salmonella genomic island 1 is specifically mobilized in trans by the IncA/C multidrug resistance plasmid family. PLoS One 5: e15302.
21. Doublet B, Golding GR, Mulvey MR, Cloeckaert A, (2008) Secondary chromosomal attachment site and tandem integration of the mobilizable Salmonella genomic island 1. PLoS One 3: e2060.
22. Fekete P, Nagy B, (2008) Salmonella Genomic Island 1 (SGI1) and genetic characteristics of animal and food isolates of Salmonella Typhimurium DT104 in Hungary. Acta Vet Hung 56: 5-11.
23. Djordjevic SP, Cain AK, Evershed NJ, Falconer L, Levings RS, et al. (2009) Emergence and evolution of multiply antibiotic-resistant Salmonella enterica serovar Paratyphi B D-tartrate-utilizing strains containing SGI1. Antimicrob Agents Chemother 53: 2319-2326.
24. Middendorf B, Hochhut B, Leipold K, Dobrindt U, Blum-Oehler G, (2004) Instability of pathogenicity islands in uropathogenic Escherichia coli 536. J Bacteriol 186: 3086-3096.
25. Golding GR, Olson AB, Doublet B, Cloeckaert A, Christianson S, et al. (2007) The effect of the Salmonella genomic island 1 on in vitro global gene expression in Salmonella enterica serovar Typhimurium LT2. Microbes Infect 9: 21-27.
26. Weill FX, Fabre L, Grandry B, Grimont PA, Casin I, (2005) Multiple-antibiotic resistance in Salmonella enterica serotype Paratyphi B isolates collected in France between 2000 and 2003 is due mainly to strains harboring Salmonella genomic islands 1, 1-B, and 1-C. Antimicrob Agents Chemother 49: 2793-2801.
27. Quiroz TS, Nieto PA, Tobar HE, Salazar-Echegarai FJ, Lizana RJ, et al. (2011) Excision of an unstable pathogenicity island in Salmonella enterica serovar Enteritidis is induced during infection of phagocytic cells. PLoS ONE 6: e26031.
28. Mather AE, Denwood MJ, Haydon DT, Matthews L, Mellor DJ, et al. (2011) The prevalences of Salmonella genomic island 1 variants in human and animal Salmonella Typhimurium DT104 are distinguishable using a Bayesian Approach. PLoS ONE 6: e27220.
29. Wozniak RA, Fouts DE, Spagnoletti M, Colombo MM, Ceccarelli D, et al. (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet 5: e1000786.
30. Albertini AM, Hofer M, Calos MP, Miller JH, (1982) On the formation of spontaneous deletions: the importance of short sequence homologies in the generation of large deletions. Cell 29: 319-328.
31. Lovett ST, Hurley RL, Sutera VA Jr, Aubuchon RH, Lebedeva MA, (2002) Crossing over between regions of limited homology in Escherichia coli. RecA-dependent and RecA-independent pathways. Genetics 160: 851-859.
32. Weston-Hafer K, Berg DE, (1991) Deletions in plasmid pBR322: replication slippage involving leading and lagging strands. Genetics 127: 649-655.
33. Szabó M, Kiss J, Kótány G, Olasz F, (1999) Importance of illegitimate recombination and transposition in IS30-associated excision events. Plasmid 42: 192-209.
34. d′Alençon E, Petranovic M, Blot M, Noirot P, Aucouturier A, et al. (1994) Copy-choice illegitimate DNA recombination revisited. EMBO J 13: 2725-2734.
35. Gibson TJ, (1984) Studies on the Epstein-Barr virus genome. Ph.D. Thesis, Univ. Cambridge, UK.
36. Gonzy-Tréboul G, Karmazyn-Campelli C, Stragier P, (1992) Developmental regulation of transcription of the Bacillus subtilis ftsAZ operon. J Mol Biol 224: 967-979.
37. Sambrook J, Fritsch EF, Maniatis T, (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
38. Kiss J, Olasz F, (1999) Formation and transposition of the covalently closed IS30 circle: the relation between tandem dimers and monomeric circles. Mol Microbiol 34: 37-52.
39. Devereux JP, Haeberli P, Smithies O, (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12: 387-395.
40. Figurski DH, Helinski DR, (1979) Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci U S A 76: 1648-1652.
41. Quandt J, Hynes MF, (1993) Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria. Gene 127: 15-21.
42. Imre A, Olasz F, Nagy B, (2011) Site-directed (IS30-FljA) transposon mutagenesis system to produce nonflagellated mutants of Salmonella Enteritidis. FEMS Microbiol Lett 317: 52-59.