pDGO100, a type 1 IncC plasmid from 1981 carrying ARI-A and a Tn1696-like transposon in a novel integrating element

Plasmid

Volumn 86, Issue , 2016, Pages 38-45

  Harmer, Christopher J ^a   Partridge, Sally R ^a   Hall, Ruth M ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

A C2; Antibiotic resistance; Evolution in situ; IncC; Integrating element

Indexed keywords

CHLORAMPHENICOL; GENTAMICIN; KANAMYCIN; NEOMYCIN; SULFAMETHOXAZOLE; TOBRAMYCIN; TRIMETHOPRIM; ALDEHYDE REDUCTASE; ANTIINFECTIVE AGENT; BACTERIAL DNA; CELL SURFACE RECEPTOR; MULTIENZYME COMPLEX; PAPS SYNTHETASE; SULFATE ADENYLYLTRANSFERASE; TRANSPOSON;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC RESISTANCE ISLAND ARI A; ANTIBIOTIC RESISTANCE ISLAND ARI B; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENE; BACTERIUM ISOLATE; BASE PAIRING; CRONOBACTER SAKAZAKII; ENTEROBACTER CLOACAE; ESCHERICHIA COLI; GENE DELETION; GENE INSERTION; GENOMIC ISLAND; INT GENE; IRON TRANSPORT; KLEBSIELLA OXYTOCA; NONHUMAN; PLASMID; PLASMID INCC; PLASMID PDG0100; RHS1 GENE; TRANSPOSON; AMINO ACID SUBSTITUTION; DNA SEQUENCE; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MULTIDRUG RESISTANCE; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION;

ALDEHYDE REDUCTASE; AMINO ACID SUBSTITUTION; ANTI-BACTERIAL AGENTS; BASE SEQUENCE; CRONOBACTER SAKAZAKII; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; DRUG RESISTANCE, MULTIPLE, BACTERIAL; ENTEROBACTER CLOACAE; ESCHERICHIA COLI; GENE DELETION; HUMANS; KLEBSIELLA OXYTOCA; MULTIENZYME COMPLEXES; PLASMIDS; POLYMERASE CHAIN REACTION; RECEPTORS, CELL SURFACE; SEQUENCE ANALYSIS, DNA; SULFATE ADENYLYLTRANSFERASE;

EID: 84977568634     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2016.06.002     Document Type: Article

References (28)

1. Ackerman, V.P., Groot Obbink, D.J., Sivertsen, T., Transferable antibiotic resistance in a general hospital: a two year survey. Aust J Exp Biol Med Sci 61:Pt 2 (1983), 251–262.
2. Burnside, J.M., Groot Obbink, D.J., Plasmid pDGO100 contains a second integron with the trimethoprim resistance gene dfrA7 as the inserted cassette. Plasmid 35 (1996), 67–70.
3. CMY-2-positive IncA/C plasmids from Escherichia coli and Salmonella enterica are a distinct component of a larger lineage of plasmids. Antimicrob. Agents Chemother. 54 (2010), 590–596.
4. Cameron, F.H., Groot Obbink, D.J., Ackerman, V.P., Hall, R.M., Nucleotide sequence of the AAD(2″) aminoglycoside adenylyltransferase determinant aadB. Evolutionary relationship of this region with those surrounding aadA in R538-1 and dhfrII in R388. Nucleic Acids Res. 14 (1986), 8625–8635.
5. Carattoli, A., Bertini, A., Villa, L., Falbo, V., Hopkins, K.L., Threlfall, E.J., Identification of plasmids by PCR-based replicon typing. J. Microbiol. Methods 63 (2005), 219–228.
6. Carver, T.J., Rutherford, K.M., Berriman, M., Rajandream, M.A., Barrell, B.G., Parkhill, J., ACT: the Artemis Comparison Tool. Bioinformatics 21 (2005), 3422–3423.
7. Chabbert, Y.A., Scavizzi, M.R., Witchitz, J.L., Gerbaud, G.R., Bouanchaud, D.H., Incompatibility groups and the classification of fi-resistance factors. J. Bacteriol. 112 (1972), 666–675.
8. Doublet, B., Boyd, D., Douard, G., Praud, K., Cloeckaert, A., Mulvey, M.R., Complete nucleotide sequence of the multidrug resistance IncA/C plasmid pR55 from Klebsiella pneumoniae isolated in 1969. J. Antimicrob. Chemother. 67 (2012), 2354–2360.
9. Fernandez-Alarcon, C., Singer, R.S., Johnson, T.J., Comparative genomics of multidrug resistance-encoding IncA/C plasmids from commensal and pathogenic Escherichia coli from multiple animal sources. PLoS One, 6, 2011, e23415.
10. Fricke, W.F., Welch, T.J., McDermott, P.F., Mammel, M.K., LeClerc, J.E., White, D.G., Cebula, T.A., Ravel, J., Comparative genomics of the IncA/C multidrug resistance plasmid family. J. Bacteriol. 191 (2009), 4750–4757.
11. Groot Obbink, D.J., Ritchie, L.J., Cameron, F.H., Mattick, J.S., Ackerman, V.P., Construction of a gentamicin resistance gene probe for epidemiological studies. Antimicrob. Agents Chemother. 28 (1985), 96–102.
12. Hall, R.M., Stokes, H.W., The structure of a partial duplication in the integron of plasmid pDGO100. Plasmid 23 (1990), 76–79.
13. NDM genes. Microb. Drug Resist. 20 (2014), 416–423.
14. Harmer, C.J., Hall, R.M., The A to Z of A/C plasmids. Plasmid 80 (2015), 63–82.
15. Parsons, Y., Hall, R.M., Stokes, H.W., A new trimethoprim resistance gene, dhfrX, in the In7 integron of plasmid pDGO100. Antimicrob. Agents Chemother. 35 (1991), 2436–2439.
16. Partridge, S.R., Analysis of antibiotic resistance regions in Gram-negative bacteria. FEMS Microbiol. Rev. 35 (2011), 820–855.
17. Partridge, S.R., Hall, R.M., In34, a complex In5 family class 1 integron containing orf513 and dfrA10. Antimicrob. Agents Chemother. 47 (2003), 342–349.
18. Partridge, S.R., Hall, R.M., The IS1111 family members IS4321 and IS5075 have subterminal inverted repeats and target the terminal inverted repeats of Tn21 family transposons. J. Bacteriol. 185 (2003), 6371–6384.
19. Porcheron, G., Garenaux, A., Proulx, J., Sabri, M., Dozois, C.M., Iron, copper, zinc, and manganese transport and regulation in pathogenic Enterobacteria: correlations between strains, site of infection and the relative importance of the different metal transport systems for virulence. Front. Cell Infect. Microbiol., 3, 2013, 90.
20. Staudenmaier, H., Van Hove, B., Yaraghi, Z., Braun, V., Nucleotide sequences of the fecBCDE genes and locations of the proteins suggest a periplasmic-binding-protein-dependent transport mechanism for iron(III) dicitrate in Escherichia coli. J. Bacteriol. 171 (1989), 2626–2633.
21. Stokes, H.W., Hall, R.M., A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integrons. Mol. Microbiol. 3 (1989), 1669–1683.
22. Stokes, H.W., Tomaras, C., Parsons, Y., Hall, R.M., The partial 3'-conserved segment duplications in the integrons In6 from pSa and In7 from pDGO100 have a common origin. Plasmid 30 (1993), 39–50.
23. Toleman, M.A., Bennett, P.M., Walsh, T.R., ISCR elements: novel gene-capturing systems of the 21st century?. Microbiol. Mol. Biol. Rev. 70 (2006), 296–316.
24. Van Hove, B., Staudenmaier, H., Braun, V., Novel two-component transmembrane transcription control: regulation of iron dicitrate transport in Escherichia coli K-12. J. Bacteriol. 172 (1990), 6749–6758.
25. Welch, T.J., Fricke, W.F., McDermott, P.F., White, D.G., Rosso, M.L., Rasko, D.A., Mammel, M.K., Eppinger, M., Rosovitz, M.J., Wagner, D., et al. Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS One, 2, 2007, e309.
26. Witchitz, J.L., Chabbert, Y.A., High level transferable resistance to gentamicin. J. Antibiot. (Tokyo) 24 (1971), 137–139.
27. Yau, S., Liu, X., Djordjevic, S.P., Hall, R.M., RSF1010-like plasmids in Australian Salmonella enterica serovar Typhimurium and origin of their sul2-strA-strB antibiotic resistance gene cluster. Microb. Drug Resist. 16 (2010), 249–252.
28. Ye, L., Li, R., Lin, D., Zhou, Y., Fu, A., Ding, Q., Chan, E.W., Yao, W., Chen, S., Characterization of an IncA/C multidrug resistance plasmid in Vibrio alginolyticus. Antimicrob. Agents Chemother. 60 (2016), 3232–3235.