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Volumn 48, Issue 5, 2016, Pages 1329-1339

Association of nasopharyngeal microbiota profiles with bronchiolitis severity in infants hospitalised for bronchiolitis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ARTIFICIAL VENTILATION; BACTERIUM IDENTIFICATION; BRONCHIOLITIS; CLINICAL FEATURE; COHORT ANALYSIS; DISEASE ASSOCIATION; DISEASE SEVERITY; FEMALE; GENE AMPLIFICATION; GENE CLUSTER; GENE SEQUENCE; HAEMOPHILUS; HOSPITAL ADMISSION; HUMAN; INFANT; INTENSIVE CARE UNIT; LENGTH OF STAY; MAJOR CLINICAL STUDY; MALE; MICROFLORA; MORAXELLA; MULTICENTER STUDY; NASOPHARYNGEAL ASPIRATION; NASOPHARYNX; NONHUMAN; OUTCOME ASSESSMENT; PRIORITY JOURNAL; PROSPECTIVE STUDY; SPECIES RICHNESS; STREPTOCOCCUS; VALIDATION STUDY; CLINICAL TRIAL; GENETICS; HOSPITALIZATION; INTENSIVE CARE; MICROBIOLOGY; NEWBORN; ODDS RATIO; PREVOTELLA; SEVERITY OF ILLNESS INDEX; STAPHYLOCOCCUS; TREATMENT OUTCOME; UNITED STATES;

EID: 84994259528     PISSN: 09031936     EISSN: 13993003     Source Type: Journal    
DOI: 10.1183/13993003.00152-2016     Document Type: Article
Times cited : (143)

References (46)
  • 1
    • 77951653074 scopus 로고    scopus 로고
    • Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: A systematic review and meta-analysis
    • Nair H, Nokes DJ, Gessner BD, et al. Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. Lancet 2010; 375: 1545-1555.
    • (2010) Lancet , vol.375 , pp. 1545-1555
    • Nair, H.1    Nokes, D.J.2    Gessner, B.D.3
  • 2
    • 84891556111 scopus 로고    scopus 로고
    • Temporal trends in emergency department visits for bronchiolitis in the United States, 2006-2010
    • Hasegawa K, Tsugawa Y, Brown DF, et al. Temporal trends in emergency department visits for bronchiolitis in the United States, 2006-2010. Pediatr Infect Dis J 2014; 33: 11-18.
    • (2014) Pediatr Infect Dis J , vol.33 , pp. 11-18
    • Hasegawa, K.1    Tsugawa, Y.2    Brown, D.F.3
  • 3
    • 84879919835 scopus 로고    scopus 로고
    • Trends in bronchiolitis hospitalizations in the United States, 2000-2009
    • Hasegawa K, Tsugawa Y, Brown DF, et al. Trends in bronchiolitis hospitalizations in the United States, 2000-2009. Pediatrics 2013; 132: 28-36.
    • (2013) Pediatrics , vol.132 , pp. 28-36
    • Hasegawa, K.1    Tsugawa, Y.2    Brown, D.F.3
  • 4
    • 84865610947 scopus 로고    scopus 로고
    • Prospective multicenter study of viral etiology and hospital length of stay in children with severe bronchiolitis
    • Mansbach JM, Piedra PA, Teach SJ, et al. Prospective multicenter study of viral etiology and hospital length of stay in children with severe bronchiolitis. Arch Pediatr Adolesc Med 2012; 166: 700-706.
    • (2012) Arch Pediatr Adolesc Med , vol.166 , pp. 700-706
    • Mansbach, J.M.1    Piedra, P.A.2    Teach, S.J.3
  • 6
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • Human Microbiome Project Consortium
    • Human Microbiome Project Consortium. A framework for human microbiome research. Nature 2012; 486: 215-221.
    • (2012) Nature , vol.486 , pp. 215-221
  • 7
    • 84862276328 scopus 로고    scopus 로고
    • Structure function and diversity of the healthy human microbiome
    • Human Microbiome Project Consortium
    • Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature 2012; 486: 207-214.
    • (2012) Nature , vol.486 , pp. 207-214
  • 8
    • 80051570891 scopus 로고    scopus 로고
    • Dysregulation of allergic airway inflammation in the absence of microbial colonization
    • Herbst T, Sichelstiel A, Schar C, et al. Dysregulation of allergic airway inflammation in the absence of microbial colonization. Am J Respir Crit Care Med 2011; 184: 198-205.
    • (2011) Am J Respir Crit Care Med , vol.184 , pp. 198-205
    • Herbst, T.1    Sichelstiel, A.2    Schar, C.3
  • 9
    • 84860216630 scopus 로고    scopus 로고
    • Microbial exposure during early life has persistent effects on natural killer T cell function
    • Olszak T, An D, Zeissig S, et al. Microbial exposure during early life has persistent effects on natural killer T cell function. Science 2012; 336: 489-493.
    • (2012) Science , vol.336 , pp. 489-493
    • Olszak, T.1    An, D.2    Zeissig, S.3
  • 10
    • 77956601960 scopus 로고    scopus 로고
    • Th2-associated immunity to bacteria in teenagers and susceptibility to asthma
    • Hollams EM, Hales BJ, Bachert C, et al. Th2-associated immunity to bacteria in teenagers and susceptibility to asthma. Eur Respir J 2010; 36: 509-516.
    • (2010) Eur Respir J , vol.36 , pp. 509-516
    • Hollams, E.M.1    Hales, B.J.2    Bachert, C.3
  • 11
    • 84875146022 scopus 로고    scopus 로고
    • Pathogenic bacteria colonizing the airways in asymptomatic neonates stimulates topical inflammatory mediator release
    • Folsgaard NV, Schjorring S, Chawes BL, et al. Pathogenic bacteria colonizing the airways in asymptomatic neonates stimulates topical inflammatory mediator release. Am J Respir Crit Care Med 2013; 187: 589-595.
    • (2013) Am J Respir Crit Care Med , vol.187 , pp. 589-595
    • Folsgaard, N.V.1    Schjorring, S.2    Chawes, B.L.3
  • 12
    • 84893938829 scopus 로고    scopus 로고
    • Viruses and microbiome alterations
    • Lynch SV. Viruses and microbiome alterations. Ann Am Thorac Soc 2014; 11: Suppl. 1, S57-S60.
    • (2014) Ann Am Thorac Soc , vol.11 , pp. S57-S60
    • Lynch, S.V.1
  • 13
    • 84943456033 scopus 로고    scopus 로고
    • The airway microbiome in patients with severe asthma: Associations with disease features and severity
    • Huang YJ, Nariya S, Harris JM, et al. The airway microbiome in patients with severe asthma: associations with disease features and severity. J Allergy Clin Immunol 2015; 136: 874-884.
    • (2015) J Allergy Clin Immunol , vol.136 , pp. 874-884
    • Huang, Y.J.1    Nariya, S.2    Harris, J.M.3
  • 14
    • 84932099974 scopus 로고    scopus 로고
    • Airway microbiota and acute respiratory infection in children
    • Hasegawa K, Camargo CA, Jr. Airway microbiota and acute respiratory infection in children. Exp Rev Clin Immunol 2015; 11: 789-792.
    • (2015) Exp Rev Clin Immunol , vol.11 , pp. 789-792
    • Hasegawa, K.1    Camargo, C.A.2
  • 15
    • 84916206478 scopus 로고    scopus 로고
    • Early respiratory microbiota composition determines bacterial succession patterns and respiratory health in children
    • Biesbroek G, Tsivtsivadze E, Sanders EA, et al. Early respiratory microbiota composition determines bacterial succession patterns and respiratory health in children. Am J Respir Crit Care Med 2014; 190: 1283-1292.
    • (2014) Am J Respir Crit Care Med , vol.190 , pp. 1283-1292
    • Biesbroek, G.1    Tsivtsivadze, E.2    Sanders, E.A.3
  • 16
    • 84929513174 scopus 로고    scopus 로고
    • The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development
    • Teo SM, Mok D, Pham K, et al. The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development. Cell Host Microbe 2015; 17: 704-715.
    • (2015) Cell Host Microbe , vol.17 , pp. 704-715
    • Teo, S.M.1    Mok, D.2    Pham, K.3
  • 17
    • 84962467486 scopus 로고    scopus 로고
    • Respiratory syncytial virus and rhinovirus severe bronchiolitis are associated with distinct nasopharyngeal microbiota
    • Mansbach JM, Hasegawa K, Henke DM, et al. Respiratory syncytial virus and rhinovirus severe bronchiolitis are associated with distinct nasopharyngeal microbiota. J Allergy Clin Immunol 2016; 137: 1909-1913.
    • (2016) J Allergy Clin Immunol , vol.137 , pp. 1909-1913
    • Mansbach, J.M.1    Hasegawa, K.2    Henke, D.M.3
  • 18
    • 84908881839 scopus 로고    scopus 로고
    • Clinical practice guideline: The diagnosis, management, and prevention of bronchiolitis
    • Ralston SL, Lieberthal AS, Meissner HC, et al. Clinical practice guideline: the diagnosis, management, and prevention of bronchiolitis. Pediatrics 2014; 134: e1474-e1502.
    • (2014) Pediatrics , vol.134 , pp. e1474-e1502
    • Ralston, S.L.1    Lieberthal, A.S.2    Meissner, H.C.3
  • 19
    • 84929658044 scopus 로고    scopus 로고
    • Respiratory syncytial virus genomic load and disease severity among children hospitalized with bronchiolitis: Multicenter cohort studies in the US and Finland
    • Hasegawa K, Jartti T, Mansbach JM, et al. Respiratory syncytial virus genomic load and disease severity among children hospitalized with bronchiolitis: multicenter cohort studies in the US and Finland. J InfectDis 2015; 211: 1550-1559.
    • (2015) J InfectDis , vol.211 , pp. 1550-1559
    • Hasegawa, K.1    Jartti, T.2    Mansbach, J.M.3
  • 20
    • 17344366818 scopus 로고    scopus 로고
    • Respiratory viral infections in patients with chronic, obstructive pulmonary disease
    • Beckham JD, Cadena A, Lin J, et al. Respiratory viral infections in patients with chronic, obstructive pulmonary disease. J Infect 2005; 50: 322-330.
    • (2005) J Infect , vol.50 , pp. 322-330
    • Beckham, J.D.1    Cadena, A.2    Lin, J.3
  • 21
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010; 7: 335-336.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 22
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso JG, Lauber CL, Walters WA, et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 2012; 6: 1621-1624.
    • (2012) ISME J , vol.6 , pp. 1621-1624
    • Caporaso, J.G.1    Lauber, C.L.2    Walters, W.A.3
  • 23
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than Blast
    • Edgar RC. Search and clustering orders of magnitude faster than Blast. Bioinformatics 2010; 26: 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 24
    • 84884904719 scopus 로고    scopus 로고
    • Uparse: Highly accurate OTU sequences from microbial amplicon reads
    • Edgar RC. Uparse: Highly accurate OTU sequences from microbial amplicon reads. Nat Methods 2013; 10: 996-998.
    • (2013) Nat Methods , vol.10 , pp. 996-998
    • Edgar, R.C.1
  • 25
    • 84873739311 scopus 로고    scopus 로고
    • The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
    • Quast C, Pruesse E, Yilmaz P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res 2013; 41: D590-D596.
    • (2013) Nucleic Acids Res , vol.41 , pp. D590-D596
    • Quast, C.1    Pruesse, E.2    Yilmaz, P.3
  • 26
    • 78751575501 scopus 로고    scopus 로고
    • UniFrac: An effective distance metric for microbial community comparison
    • Lozupone C, Lladser ME, Knights D, et al. UniFrac: an effective distance metric for microbial community comparison. ISME J 2011; 5: 169-172.
    • (2011) ISME J , vol.5 , pp. 169-172
    • Lozupone, C.1    Lladser, M.E.2    Knights, D.3
  • 27
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 2005; 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 28
    • 84938743946 scopus 로고    scopus 로고
    • Rhinovirus-induced bronchiolitis: Lack of association between virus genomic load and short-term outcomes
    • Jartti T, Hasegawa K, Mansbach JM, et al. Rhinovirus-induced bronchiolitis: lack of association between virus genomic load and short-term outcomes. J Allergy Clin Immunol 2015; 136: 509-512.
    • (2015) J Allergy Clin Immunol , vol.136 , pp. 509-512
    • Jartti, T.1    Hasegawa, K.2    Mansbach, J.M.3
  • 29
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • Wu GD, Chen J, Hoffmann C, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 2011; 334: 105-108.
    • (2011) Science , vol.334 , pp. 105-108
    • Wu, G.D.1    Chen, J.2    Hoffmann, C.3
  • 30
    • 0023453329 scopus 로고
    • Silhouettes: A graphical aid to the interpretation and validation of cluster analysis
    • Rousseeuw PJ. Silhouettes: a graphical aid to the interpretation and validation of cluster analysis. J Computational Appl Math 1987; 20: 53-65.
    • (1987) J Computational Appl Math , vol.20 , pp. 53-65
    • Rousseeuw, P.J.1
  • 31
    • 84864579031 scopus 로고    scopus 로고
    • Microbial co-occurrence relationships in the human microbiome
    • Faust K, Sathirapongsasuti JF, Izard J, et al. Microbial co-occurrence relationships in the human microbiome. PLoS Comput Biol 2012; 8: e1002606.
    • (2012) PLoS Comput Biol , vol.8 , pp. e1002606
    • Faust, K.1    Sathirapongsasuti, J.F.2    Izard, J.3
  • 32
    • 84865718292 scopus 로고    scopus 로고
    • Prospective multicenter study of children with bronchiolitis requiring mechanical ventilation
    • Mansbach JM, Piedra PA, Stevenson MD, et al. Prospective multicenter study of children with bronchiolitis requiring mechanical ventilation. Pediatrics 2012; 130: e492-e500.
    • (2012) Pediatrics , vol.130 , pp. e492-e500
    • Mansbach, J.M.1    Piedra, P.A.2    Stevenson, M.D.3
  • 33
    • 84905917011 scopus 로고    scopus 로고
    • Multicenter study of viral etiology and relapse in hospitalized children with bronchiolitis
    • Hasegawa K, Mansbach JM, Teach SJ, et al. Multicenter study of viral etiology and relapse in hospitalized children with bronchiolitis. Pediatr Infect Dis J 2014; 33: 809-813.
    • (2014) Pediatr Infect Dis J , vol.33 , pp. 809-813
    • Hasegawa, K.1    Mansbach, J.M.2    Teach, S.J.3
  • 34
    • 85050578920 scopus 로고    scopus 로고
    • Association between hyponatremia and higher bronchiolitis severity among children in the ICU with bronchiolitis
    • Hasegawa K, Stevenson MD, Mansbach JM, et al. Association between hyponatremia and higher bronchiolitis severity among children in the ICU with bronchiolitis. Hosp Pediatr 2015; 5: 385-389.
    • (2015) Hosp Pediatr , vol.5 , pp. 385-389
    • Hasegawa, K.1    Stevenson, M.D.2    Mansbach, J.M.3
  • 35
    • 84876427223 scopus 로고    scopus 로고
    • Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
    • McMurdie PJ, Holmes S. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One 2013; 8: e61217.
    • (2013) PLoS One , vol.8 , pp. e61217
    • McMurdie, P.J.1    Holmes, S.2
  • 36
    • 84899620247 scopus 로고    scopus 로고
    • Detection of pathogenic bacteria during rhinovirus infection is associated with increased respiratory symptoms and asthma exacerbations
    • Kloepfer KM, Lee WM, Pappas TE, et al. Detection of pathogenic bacteria during rhinovirus infection is associated with increased respiratory symptoms and asthma exacerbations. J Allergy Clin Immunol 2014; 133: 1301-1307.
    • (2014) J Allergy Clin Immunol , vol.133 , pp. 1301-1307
    • Kloepfer, K.M.1    Lee, W.M.2    Pappas, T.E.3
  • 37
    • 85027953805 scopus 로고    scopus 로고
    • Duration of wheezy episodes in early childhood is independent of the microbial trigger
    • Carlsson CJ, Vissing NH, Sevelsted A, et al. Duration of wheezy episodes in early childhood is independent of the microbial trigger. J Allergy Clin Immunol 2015; 136: 1208-1214.
    • (2015) J Allergy Clin Immunol , vol.136 , pp. 1208-1214
    • Carlsson, C.J.1    Vissing, N.H.2    Sevelsted, A.3
  • 38
    • 84887916383 scopus 로고    scopus 로고
    • Increased risk of pneumonia and bronchiolitis after bacterial colonization of the airways as neonates
    • Vissing NH, Chawes BL, Bisgaard H. Increased risk of pneumonia and bronchiolitis after bacterial colonization of the airways as neonates. Am J Respir Crit Care Med 2013; 188: 1246-1252.
    • (2013) Am J Respir Crit Care Med , vol.188 , pp. 1246-1252
    • Vissing, N.H.1    Chawes, B.L.2    Bisgaard, H.3
  • 39
    • 84886444990 scopus 로고    scopus 로고
    • Neonatal airway colonization is associated with troublesome lung symptoms in infants
    • von Linstow ML, Schonning K, Hoegh AM, et al. Neonatal airway colonization is associated with troublesome lung symptoms in infants. Am J Respir Crit Care Med 2013; 188: 1041-1042.
    • (2013) Am J Respir Crit Care Med , vol.188 , pp. 1041-1042
    • Von Linstow, M.L.1    Schonning, K.2    Hoegh, A.M.3
  • 40
    • 84866153940 scopus 로고    scopus 로고
    • Upper respiratory tract microbial communities, acute otitis media pathogens, and antibiotic use in healthy and sick children
    • Pettigrew MM, Laufer AS, Gent JF, et al. Upper respiratory tract microbial communities, acute otitis media pathogens, and antibiotic use in healthy and sick children. Appl Environ Microbiol 2012; 78: 6262-6270.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 6262-6270
    • Pettigrew, M.M.1    Laufer, A.S.2    Gent, J.F.3
  • 41
    • 79955092594 scopus 로고    scopus 로고
    • Microbial communities of the upper respiratory tract and otitis media in children
    • Laufer AS, Metlay JP, Gent JF, et al. Microbial communities of the upper respiratory tract and otitis media in children. mBio 2011; 2: e00210-e00245.
    • (2011) MBio , vol.2 , pp. e00210-e00245
    • Laufer, A.S.1    Metlay, J.P.2    Gent, J.F.3
  • 42
    • 84936950041 scopus 로고    scopus 로고
    • Haemophilus influenzae increases the susceptibility and inflammatory response of airway epithelial cells to viral infections
    • Gulraiz F, Bellinghausen C, Bruggeman CA, et al. Haemophilus influenzae increases the susceptibility and inflammatory response of airway epithelial cells to viral infections. FASEB J 2015; 29: 849-858.
    • (2015) FASEB J , vol.29 , pp. 849-858
    • Gulraiz, F.1    Bellinghausen, C.2    Bruggeman, C.A.3
  • 43
    • 33845618496 scopus 로고    scopus 로고
    • H. Influenzae potentiates airway epithelial cell responses to rhinovirus by increasing ICAM-1 and TLR3 expression
    • Sajjan US, Jia Y, Newcomb DC, et al. H. influenzae potentiates airway epithelial cell responses to rhinovirus by increasing ICAM-1 and TLR3 expression. FASEB J 2006; 20: 2121-2123.
    • (2006) FASEB J , vol.20 , pp. 2121-2123
    • Sajjan, U.S.1    Jia, Y.2    Newcomb, D.C.3
  • 44
    • 70349932460 scopus 로고    scopus 로고
    • Respiratory syncytial virus-induced dysregulation of expression of a mucosal beta-defensin augments colonization of the upper airway by non-typeable Haemophilus influenzae
    • McGillivary G, Mason KM, Jurcisek JA, et al. Respiratory syncytial virus-induced dysregulation of expression of a mucosal beta-defensin augments colonization of the upper airway by non-typeable Haemophilus influenzae. Cell Microbiol 2009; 11: 1399-1408.
    • (2009) Cell Microbiol , vol.11 , pp. 1399-1408
    • McGillivary, G.1    Mason, K.M.2    Jurcisek, J.A.3
  • 45
    • 80053122563 scopus 로고    scopus 로고
    • Topographical continuity of bacterial populations in the healthy human respiratory tract
    • Charlson ES, Bittinger K, Haas AR, et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 2011; 184: 957-963.
    • (2011) Am J Respir Crit Care Med , vol.184 , pp. 957-963
    • Charlson, E.S.1    Bittinger, K.2    Haas, A.R.3
  • 46
    • 20144375334 scopus 로고    scopus 로고
    • Quantitative and qualitative analysis of rhinovirus infection in bronchial tissues
    • Mosser AG, Vrtis R, Burchell L, et al. Quantitative and qualitative analysis of rhinovirus infection in bronchial tissues. Am J Respir Crit Care Med 2005; 171: 645-651.
    • (2005) Am J Respir Crit Care Med , vol.171 , pp. 645-651
    • Mosser, A.G.1    Vrtis, R.2    Burchell, L.3


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