-
1
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader, G.D. and Hogue, C.W.V. (2003). An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 4, 2.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.V.2
-
2
-
-
0034611681
-
Genetics of body-weight regulation
-
Barsh, G. S., Farooqi, I. S. and O'Rahilly, S. (2000). Genetics of body-weight regulation. Nature 404, 644-651.
-
(2000)
Nature
, vol.404
, pp. 644-651
-
-
Barsh, G.S.1
Farooqi, I.S.2
O'Rahilly, S.3
-
3
-
-
42649106487
-
Jund is a determinant of macrophage activation and is associated with glomerulonephritis susceptibility
-
Behmoaras, J., Bhangal, G., Smith, J., McDonald, K., Mutch, B., Lai, P. C., Domin, J., Game, L., Salama, A., Foxwell, B. M. et al. (2008). Jund is a determinant of macrophage activation and is associated with glomerulonephritis susceptibility. Nat. Genet. 40, 553-559.
-
(2008)
Nat. Genet.
, vol.40
, pp. 553-559
-
-
Behmoaras, J.1
Bhangal, G.2
Smith, J.3
McDonald, K.4
Mutch, B.5
Lai, P.C.6
Domin, J.7
Game, L.8
Salama, A.9
Foxwell, B.M.10
-
4
-
-
77954579782
-
Genetic loci modulate macrophage activity and glomerular damage in experimental glomerulonephritis
-
Behmoaras, J., Smith, J., D'Souza, Z., Bhangal, G., Chawanasuntoropoj, R., Tam, F. W. K., Pusey, C. D., Aitman, T. J. and Cook, H. T. (2010). Genetic loci modulate macrophage activity and glomerular damage in experimental glomerulonephritis. J. Am. Soc. Nephrol. 21, 1136-1144.
-
(2010)
J. Am. Soc. Nephrol.
, vol.21
, pp. 1136-1144
-
-
Behmoaras, J.1
Smith, J.2
D'Souza, Z.3
Bhangal, G.4
Chawanasuntoropoj, R.5
Tam, F.W.K.6
Pusey, C.D.7
Aitman, T.J.8
Cook, H.T.9
-
5
-
-
84929094973
-
Macrophage epoxygenase determines a profibrotic transcriptome signature
-
Behmoaras, J., and Diaz, A. G., Venda, L., Ko, J. H., Srivastava, P., Montoya, A., Faull, P., Webster, Z., Moyon, B., Pusey, C. D. et al. (2015). Macrophage epoxygenase determines a profibrotic transcriptome signature. J. Immunol. 194, 4705-4716.
-
(2015)
J. Immunol.
, vol.194
, pp. 4705-4716
-
-
Behmoaras, J.1
Diaz, A.G.2
Venda, L.3
Ko, J.H.4
Srivastava, P.5
Montoya, A.6
Faull, P.7
Webster, Z.8
Moyon, B.9
Pusey, C.D.10
-
6
-
-
56849128391
-
Gene-environment interactions in the etiology of obesity: Defining the fundamentals
-
Bouchard, C. (2008). Gene-environment interactions in the etiology of obesity: defining the fundamentals. Obesity 16, S5-S10.
-
(2008)
Obesity
, vol.16
, pp. S5-S10
-
-
Bouchard, C.1
-
7
-
-
5044245707
-
Gene co-expression network topology provides a framework for molecular characterization of cellular state
-
Carter, S. L., Brechbühler, C. M., Griffin, M. and Bond, A. T. (2004). Gene co-expression network topology provides a framework for molecular characterization of cellular state. Bioinformatics 20, 2242-2250.
-
(2004)
Bioinformatics
, vol.20
, pp. 2242-2250
-
-
Carter, S.L.1
Brechbühler, C.M.2
Griffin, M.3
Bond, A.T.4
-
8
-
-
84865304885
-
Inducible microRNA-223 down-regulation promotes TLR-triggered IL-6 and IL-1β production in macrophages by targeting STAT3
-
Chen, Q., Wang, H., Liu, Y., Song, Y., Lai, L., Han, Q., Cao, X. and Wang, Q. (2012). Inducible microRNA-223 down-regulation promotes TLR-triggered IL-6 and IL-1β production in macrophages by targeting STAT3. PLoS ONE 7, e42971.
-
(2012)
PLoS ONE
, vol.7
-
-
Chen, Q.1
Wang, H.2
Liu, Y.3
Song, Y.4
Lai, L.5
Han, Q.6
Cao, X.7
Wang, Q.8
-
9
-
-
38449101120
-
Integration of biological networks and gene expression data using cytoscape
-
Cline, M. S., Smoot, M., Cerami, E., Kuchinsky, A., Landys, N., Workman, C., Christmas, R., Avila-Campilo, I., Creech, M., Gross, B. et al. (2007). Integration of biological networks and gene expression data using Cytoscape. Nat. Protoc. 2, 2366-2382.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
-
10
-
-
13444273396
-
The rat genome database (RGD): Developments towards a phenome database
-
de la Cruz, N., Bromberg, S., Pasko, D., Shimoyama, M., Twigger, S., Chen, J., Chen, C.-F., Fan, C., Foote, C., Gopinath, G. R. et al. (2005). The rat genome database (RGD): developments towards a phenome database. Nucleic Acids Res. 33, D485-D491.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. D485-D491
-
-
De La Cruz, N.1
Bromberg, S.2
Pasko, D.3
Shimoyama, M.4
Twigger, S.5
Chen, J.6
Chen, C.-F.7
Fan, C.8
Foote, C.9
Gopinath, G.R.10
-
11
-
-
84888876767
-
Experimental crescentic glomerulonephritis: A new bicongenic rat model
-
D'Souza, Z., McAdoo, S. P., Smith, J., and Pusey, C. D., Cook, H. T., Behmoaras, J. and Aitman, T. J. (2013). Experimental crescentic glomerulonephritis: a new bicongenic rat model. Dis. Model. Mech. 6, 1477-1486.
-
(2013)
Dis. Model. Mech.
, vol.6
, pp. 1477-1486
-
-
D'Souza, Z.1
McAdoo, S.P.2
Smith, J.3
Pusey, C.D.4
Cook, H.T.5
Behmoaras, J.6
Aitman, T.J.7
-
12
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
Falcon, S. and Gentleman, R. (2007). Using GOstats to test gene lists for GO term association. Bioinformatics 23, 257-258.
-
(2007)
Bioinformatics
, vol.23
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
-
13
-
-
77649209853
-
Gene-environment interactions in obesity
-
Hetherington, M. M. and Cecil, J. E. (2009). Gene-environment interactions in obesity. Forum. Nutr. 63, 195-203.
-
(2009)
Forum. Nutr.
, vol.63
, pp. 195-203
-
-
Hetherington, M.M.1
Cecil, J.E.2
-
14
-
-
79955632319
-
Linking lipid metabolism to the innate immune response in macrophages through sterol regulatory element binding protein-1a
-
Im, S.-S., Yousef, L., Blaschitz, C., Liu, J. Z., and Edwards, R. A., Young, S. G., Raffatellu, M. and Osborne, T. F. (2011). Linking lipid metabolism to the innate immune response in macrophages through sterol regulatory element binding protein-1a. Cell Metab. 13, 540-549.
-
(2011)
Cell Metab.
, vol.13
, pp. 540-549
-
-
Im, S.-S.1
Yousef, L.2
Blaschitz, C.3
Liu, J.Z.4
Edwards, R.A.5
Young, S.G.6
Raffatellu, M.7
Osborne, T.F.8
-
15
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R. A., Hobbs, B., Collin, F., Beazer-Barclay, Y. D., Antonellis, K. J., Scherf, U. and Speed, T.P. (2003). Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
16
-
-
76149111947
-
Inflammatory lipid mediators in adipocyte function and obesity
-
Iyer, A., and Fairlie, D. P., Prins, J. B., Hammock, B. D. and Brown, L. (2010). Inflammatory lipid mediators in adipocyte function and obesity. Nat. Rev. Endocrinol. 6, 71-82.
-
(2010)
Nat. Rev. Endocrinol.
, vol.6
, pp. 71-82
-
-
Iyer, A.1
Fairlie, D.P.2
Prins, J.B.3
Hammock, B.D.4
Brown, L.5
-
17
-
-
48449102450
-
Hubba: Hub objects analyzer - A framework of interactome hubs identification for network biology
-
Lin, C.-Y., Chin, C.-H., Wu, H.-H., Chen, S.-H., Ho, C.-W. and Ko, M.-T. (2008). Hubba: hub objects analyzer - a framework of interactome hubs identification for network biology. Nucleic Acids Res. 36, W438-W443.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. W438-W443
-
-
Lin, C.-Y.1
Chin, C.-H.2
Wu, H.-H.3
Chen, S.-H.4
Ho, C.-W.5
Ko, M.-T.6
-
18
-
-
79957920754
-
Inflammatory links between obesity and metabolic disease
-
Lumeng, C. N. and Saltiel, A. R. (2011). Inflammatory links between obesity and metabolic disease. J. Clin. Invest. 121, 2111.
-
(2011)
J. Clin. Invest.
, vol.121
, pp. 2111
-
-
Lumeng, C.N.1
Saltiel, A.R.2
-
19
-
-
0034714382
-
Molecular characterization of human acetyl-coa synthetase, an enzyme regulated by sterol regulatory element-binding proteins
-
Luong, A., and Hannah, V. C., Brown, M. S. and Goldstein, J. L. (2000). Molecular characterization of human acetyl-CoA synthetase, an enzyme regulated by sterol regulatory element-binding proteins. J. Biol. Chem. 275, 26458-26466.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 26458-26466
-
-
Luong, A.1
Hannah, V.C.2
Brown, M.S.3
Goldstein, J.L.4
-
20
-
-
79952281628
-
Characterization of the macrophage transcriptome in glomerulonephritis-susceptible and -resistant rat strains
-
Maratou, K., Behmoaras, J., Fewings, C., Srivastava, P., D'Souza, Z., Smith, J., Game, L., Cook, T. and Aitman, T. (2011). Characterization of the macrophage transcriptome in glomerulonephritis-susceptible and -resistant rat strains. Genes Immun. 12, 78-89.
-
(2011)
Genes Immun.
, vol.12
, pp. 78-89
-
-
Maratou, K.1
Behmoaras, J.2
Fewings, C.3
Srivastava, P.4
D'Souza, Z.5
Smith, J.6
Game, L.7
Cook, T.8
Aitman, T.9
-
21
-
-
84950145307
-
Leptin signal transduction underlies the differential metabolic response of LEW and WKY rats to cafeteria diet
-
Martínez-Micaelo, N., González-Abuín, N., Ardévol, A., Pinent, M., Petretto, E., Behmoaras, J. and Blay, M. (2016). Leptin signal transduction underlies the differential metabolic response of LEW and WKY rats to cafeteria diet. J. Mol. Endocrinol. 56, 1-10.
-
(2016)
J. Mol. Endocrinol.
, vol.56
, pp. 1-10
-
-
Martínez-Micaelo, N.1
González-Abuín, N.2
Ardévol, A.3
Pinent, M.4
Petretto, E.5
Behmoaras, J.6
Blay, M.7
-
22
-
-
80655132169
-
ClusterMaker: A multi-algorithm clustering plugin for cytoscape
-
Morris, J. H., Apeltsin, L., Newman, A. M., Baumbach, J., Wittkop, T., Su, G., Bader, G. D. and Ferrin, T. E. (2011). clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinformatics 12, 436.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 436
-
-
Morris, J.H.1
Apeltsin, L.2
Newman, A.M.3
Baumbach, J.4
Wittkop, T.5
Su, G.6
Bader, G.D.7
Ferrin, T.E.8
-
23
-
-
34848903220
-
From correlation tocausation networks: A simple approximate learning algorithm and its application to high-dimensional plant gene expression data
-
Opgen-Rhein, R. and Strimmer, K. (2007). From correlation tocausation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data. BMC Syst. Biol. 1, 37.
-
(2007)
BMC Syst. Biol.
, vol.1
, pp. 37
-
-
Opgen-Rhein, R.1
Strimmer, K.2
-
24
-
-
56849127842
-
Genotype-phenotype associations: Modulation by diet and obesity
-
Ordovas, J. M. (2008). Genotype-phenotype associations: modulation by diet and obesity. Obesity 16, S40-S46.
-
(2008)
Obesity
, vol.16
, pp. S40-S46
-
-
Ordovas, J.M.1
-
25
-
-
84857985148
-
The cellular and signaling networks linking the immune system and metabolism in disease
-
Osborn, O. and Olefsky, J. M. (2012). The cellular and signaling networks linking the immune system and metabolism in disease. Nat. Med. 18, 363-374.
-
(2012)
Nat. Med.
, vol.18
, pp. 363-374
-
-
Osborn, O.1
Olefsky, J.M.2
-
26
-
-
0034693259
-
Sterol regulatory element-binding proteins (SREBPs): Key regulators of nutritional homeostasis and insulin action
-
Osborne, T. F. (2000). Sterol regulatory element-binding proteins (SREBPs): key regulators of nutritional homeostasis and insulin action. J. Biol. Chem. 275, 32379-32382.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 32379-32382
-
-
Osborne, T.F.1
-
27
-
-
77953421610
-
Monocytes and macrophages regulate immunity through dynamic networks of survival and cell death
-
Parihar, A., Eubank, T. D. and Doseff, A. I. (2010). Monocytes and macrophages regulate immunity through dynamic networks of survival and cell death. J. Innate Immun. 2, 204-215.
-
(2010)
J. Innate Immun.
, vol.2
, pp. 204-215
-
-
Parihar, A.1
Eubank, T.D.2
Doseff, A.I.3
-
28
-
-
0033769120
-
Gene-diet interactions in obesity
-
Pérusse, L. and Bouchard, C. (2000). Gene-diet interactions in obesity. Am. J. Clin. Nutr. 72, 1285s-1290s.
-
(2000)
Am. J. Clin. Nutr.
, vol.72
, pp. 1285s-1290s
-
-
Pérusse, L.1
Bouchard, C.2
-
29
-
-
78649738291
-
SIRT2 regulates NF-κB dependent gene expression through deacetylation of p65 lys310
-
Rothgiesser, K. M., Erener, S., Waibel, S., Lüscher, B. and Hottiger, M. O. (2010). SIRT2 regulates NF-κB dependent gene expression through deacetylation of p65 Lys310. J. Cell Sci. 123, 4251-4258.
-
(2010)
J. Cell Sci.
, vol.123
, pp. 4251-4258
-
-
Rothgiesser, K.M.1
Erener, S.2
Waibel, S.3
Lüscher, B.4
Hottiger, M.O.5
-
30
-
-
79957482239
-
Cafeteria diet is a robust model of human metabolic syndrome with liver and adipose inflammation: Comparison to high-fat diet
-
Sampey, B. P., and Vanhoose, A. M., Winfield, H. M., Freemerman, A. J., and Muehlbauer, M. J., Fueger, P. T., Newgard, C. B. and Makowski, L. (2011). Cafeteria diet is a robust model of human metabolic syndrome with liver and adipose inflammation: comparison to high-fat diet. Obesity 19, 1109-1117.
-
(2011)
Obesity
, vol.19
, pp. 1109-1117
-
-
Sampey, B.P.1
Vanhoose, A.M.2
Winfield, H.M.3
Freemerman, A.J.4
Muehlbauer, M.J.5
Fueger, P.T.6
Newgard, C.B.7
Makowski, L.8
-
31
-
-
15944364151
-
An empirical bayes approach to inferring large-scale gene association networks
-
Schäfer, J. and Strimmer, K. (2005). An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics 21, 754-764.
-
(2005)
Bioinformatics
, vol.21
, pp. 754-764
-
-
Schäfer, J.1
Strimmer, K.2
-
32
-
-
3543146669
-
Obesity: The integrated roles of environment and genetics
-
Speakman, J. R. (2004). Obesity: the integrated roles of environment and genetics. J. Nutr. 134, 2090S-2105S.
-
(2004)
J. Nutr.
, vol.134
, pp. 2090S-2105S
-
-
Speakman, J.R.1
-
33
-
-
84857879280
-
Identification of prognostic and diagnostic biomarkers of glucose intolerance in ApoE3Leiden mice
-
Wopereis, S., Radonjic, M., Rubingh, C., Erk, M. V., Smilde, A., and Duyvenvoorde, W. V., Cnubben, N., Kooistra, T., Ommen, B. V. and van Kleemann, R. (2012). Identification of prognostic and diagnostic biomarkers of glucose intolerance in ApoE3Leiden mice. Physiol. Genomics 44, 293-304.
-
(2012)
Physiol. Genomics
, vol.44
, pp. 293-304
-
-
Wopereis, S.1
Radonjic, M.2
Rubingh, C.3
Erk, M.V.4
Smilde, A.5
Duyvenvoorde, W.V.6
Cnubben, N.7
Kooistra, T.8
Ommen, B.V.9
Van Kleemann, R.10
-
34
-
-
33745197808
-
The role of leptin in leptin resistance and obesity
-
Zhang, Y. and Scarpace, P. J. (2006). The role of leptin in leptin resistance and obesity. Physiol. Behav. 88, 249-256.
-
(2006)
Physiol. Behav.
, vol.88
, pp. 249-256
-
-
Zhang, Y.1
Scarpace, P.J.2
|