Etiology of Acute Respiratory Infections in Infants: A Prospective Birth Cohort Study

Pediatric Infectious Disease Journal

Volumn 36, Issue 1, 2017, Pages 25-30

  Kumar, Prawin ^a   Medigeshi, Guruprasad R ^b   Mishra, Vishnu S ^a   Islam, Mojahidul ^a   Randev, Shivani ^a   Mukherjee, Aparna ^a   Chaudhry, Rama ^a   Kapil, Arti ^a   Ram Jat, Kana ^a   Lodha, Rakesh ^a   Kabra, Sushil K ^a  

^a ALL INDIA INSTITUTE OF MEDICAL SCIENCES   (India)

^b TRANSLATIONAL HEALTH SCIENCE AND TECHNOLOGY INSTITUTE   (India)

Author keywords

acute respiratory infections; etiology; infants; pneumonia

Indexed keywords

PROCALCITONIN; VIRUS DNA; VIRUS RNA;

ARTICLE; BIRTH WEIGHT; BLOOD CULTURE; CHLAMYDIA; COHORT ANALYSIS; CORONAVIRUS INFECTION; DISEASE ASSOCIATION; DRUG SCREENING; FEMALE; GESTATIONAL AGE; HUMAN; INCIDENCE; INFANT; INFANT DISEASE; LOWER RESPIRATORY TRACT INFECTION; MAJOR CLINICAL STUDY; MALE; MIXED INFECTION; MULTIPLEX POLYMERASE CHAIN REACTION; MYCOPLASMA; NASOPHARYNGEAL ASPIRATION; NONHUMAN; PARAMYXOVIRUS INFECTION; PRIORITY JOURNAL; PROSPECTIVE STUDY; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY SYNCYTIAL VIRUS INFECTION; RESPIRATORY TRACT INFECTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHINOVIRUS INFECTION; STREPTOCOCCUS PNEUMONIAE; UPPER RESPIRATORY TRACT INFECTION; VIRUS TYPING; ACUTE DISEASE; ADULT; BACTERIAL INFECTIONS; BACTERIUM; GENETICS; MICROBIOLOGY; NEWBORN; RESPIRATORY TRACT INFECTIONS; SEASON; VIROLOGY; VIRUS; VIRUS DISEASES;

ACUTE DISEASE; ADULT; BACTERIA; BACTERIAL INFECTIONS; FEMALE; HUMANS; INCIDENCE; INFANT; INFANT, NEWBORN; MALE; PROSPECTIVE STUDIES; RESPIRATORY TRACT INFECTIONS; SEASONS; VIRUS DISEASES; VIRUSES;

EID: 84991517845     PISSN: 08913668     EISSN: 15320987     Source Type: Journal    
DOI: 10.1097/INF.0000000000001359     Document Type: Article

References (47)

1. World Health Organization (WHO). WHO Guidelines for Infection Prevention and Control of Epidemic-and Pandemic-Prone Acute Respiratory Infections. Geneva, Switzerland: WHO; 2014.
2. World Health Organization (WHO). Cause Specific Mortality and Mortality in World Health Statistic. Geneva, Switzerland: WHO; 2014.
3. Berman S. Epidemiology of acute respiratory infections in children of developing countries. Rev Infect Dis. 1991;13(suppl 6):S454-S462.
4. Manmohan BSK. Acute respiratory infection. Indian Pediatr. 1984;21:1-3.
5. World Health Organization (WHO). The World Health Report 2004: Changing History [electronic resource]. Geneva, Switzerland: WHO; 2004.
6. Hayden FG. Respiratory viral threats. Curr Opin Infect Dis. 2006;19: 169-178.
7. Mackie PL. The classification of viruses infecting the respiratory tract. Paediatr Respir Rev. 2003;4:84-90.
8. Melnick JL. Taxonomy of viruses. In: Lannette EM, Balows A, Hausler J Jr., Shadowy HJ (eds). Manual of Clinical Microbiology. Washington, DC: Americal Society for Microbiology; 1985:694-700.
9. Rhedin S, Lindstrand A, Rotzén-Östlund M, et al. Clinical utility of PCR for common viruses in acute respiratory illness. Pediatrics. 2014;133: e538-e545.
10. Sakthivel SK, Whitaker B, Lu X, et al. Comparison of fast-track diagnostics respiratory pathogens multiplex real time RT-PCR assay with in-house singleplex assays for comprehensive detection of human respiratory viruses. J Virol Methods. 2012;185:259-266.
11. World Health Organization (WHO). WHO pocket book of hospital care for children. In: Guideline for Management of Common Childhood Illnesses. 2013:76.
12. Fast-Track Diagnosis. FTD Respiratory Pathogens 21 Manual. FTD; 2013:v6.
13. Nasreen S, Luby SP, Brooks WA, et al. Population-based incidence of severe acute respiratory virus infections among children aged <5 years in rural Bangladesh, June-October 2010. PLoS One. 2014;9:e89978.
14. Chhabra P, Garg S, Mittal SK, et al. Magnitude of acute respiratory infections in under five. Indian Pediatr. 1993;30:1315-1319.
15. Regamey N, Kaiser L, Roiha HL, et al; Swiss Paediatric Respiratory Research Group. Viral etiology of acute respiratory infections with cough in infancy: a community-based birth cohort study. Pediatr Infect Dis J. 2008;27:100-105.
16. Elnifro EM, Ashshi AM, Cooper RJ, et al. Multiplex PCR: optimization and application in diagnostic virology. Clin Microbiol Rev. 2000;13:559-570.
17. Jansen RR, Schinkel J, Koekkoek S, et al. Development and evaluation of a four-tube real time multiplex PCR assay covering fourteen respiratory viruses, and comparison to its corresponding single target counterparts. J Clin Virol. 2011;51:179-185.
18. Lu Y, Wang S, Zhang L, et al. Epidemiology of human respiratory viruses in children with acute respiratory tract infections in Jinan, China. Clin Dev Immunol. 2013;2013:210490.
19. van Gageldonk-Lafeber AB, Heijnen ML, Bartelds AI, et al. A case-control study of acute respiratory tract infection in general practice patients in The Netherlands. Clin Infect Dis. 2005;41:490-497.
20. van der Zalm MM, van Ewijk BE, Wilbrink B, et al. Respiratory pathogens in children with and without respiratory symptoms. J Pediatr. 2009;154:396-400, 400.e1.
21. Ahmed JA, Katz MA, Auko E, et al. Epidemiology of respiratory viral infections in two long-term refugee camps in Kenya, 2007-2010. BMC Infect Dis. 2012;12:7.
22. Kusel MM, de Klerk NH, Holt PG, et al. Role of respiratory viruses in acute upper and lower respiratory tract illness in the first year of life: a birth cohort study. Pediatr Infect Dis J. 2006;25:680-686.
23. Souza LS, Ramos EA, Carvalho FM, et al. Viral respiratory infections in young children attending day care in urban Northeast Brazil. Pediatr Pulmonol. 2003;35:184-191.
24. Matu M, Kikuvi G, Wanzala P, et al. Aetiology of acute respiratory infections in children under five years in Nakuru, Kenya. J Microbiol Exp. 2014;1:00021.
25. Hoffmann J, Rabezanahary H, Randriamarotia M, et al. Viral and atypical bacterial etiology of acute respiratory infections in children under 5 years old living in a rural tropical area of Madagascar. PLoS One. 2012;7:e43666.
26. Chonmaitree T, Revai K, Grady JJ, et al. Viral upper respiratory tract infection and otitis media complication in young children. Clin Infect Dis. 2008;46:815-823.
27. van der Hoek L, Ihorst G, Sure K, et al. Burden of disease due to human coronavirus NL63 infections and periodicity of infection. J Clin Virol. 2010;48:104-108.
28. Woo PC, Lau SK, Chu CM, et al. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J Virol. 2005;79:884-895.
29. van den Hoogen BG, de Jong JC, Groen J, et al. A newly discovered human pneumovirus isolated from young children with respiratory tract disease. Nat Med. 2001;7:719-724.
30. Allander T, Tammi MT, Eriksson M, et al. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci U S A. 2005;102:12891-12896.
31. Hable KA, O'Connell EJ, Herrmann EC Jr. Group B coxsackieviruses as respiratory viruses. Mayo Clin Proc. 1970;45:170-176.
32. Portes SA, Da Silva EE, Siqueira MM, et al. Enteroviruses isolated from patients with acute respiratory infections during seven years in Rio de Janeiro (1985-1991). Rev Inst Med Trop Sao Paulo. 1998;40:337-342.
33. Bonzel L, Tenenbaum T, Schroten H, et al. Frequent detection of viral coinfection in children hospitalized with acute respiratory tract infection using a real-time polymerase chain reaction. Pediatr Infect Dis J. 2008;27:589-594.
34. Tecu C, Mihai ME, Alexandrescu VI, et al. Single and multipathogen viral infections in hospitalized children with acute respiratory infections. Roum Arch Microbiol Immunol. 2013;72:242-249.
35. Schildgen O, Müller A, Allander T, et al. Human bocavirus: passenger or pathogen in acute respiratory tract infections? Clin Microbiol Rev. 2008;21:291-304.
36. Gatchalian SR, Quiambao BP, Morelos AM, et al. Bacterial and viral etiology of serious infections in very young Filipino infants. Pediatr Infect Dis J. 1999;18(suppl 10):S50-S55.
37. Singh AK, Jain A, Jain B, et al. Viral aetiology of acute lower respiratory tract illness in hospitalised paediatric patients of a tertiary hospital: one year prospective study. Indian J Med Microbiol. 2014;32:13-18.
38. Chan PW, Chew FT, Tan TN, et al. Seasonal variation in respiratory syncytial virus chest infection in the tropics. Pediatr Pulmonol. 2002;34:47-51.
39. Lim JS, Woo SI, Kwon HI, et al. Clinical characteristics of acute lower respiratory tract infection due to 13 respiratory viruses detected by multiplex PCR in children. Korean J Pediatr. 2010;53:373-379.
40. Mathisen M, Strand TA, Sharma BN, et al. RNA viruses in communityacquired childhood pneumonia in semi-urban Nepal; a cross-sectional study. BMC Med. 2009;7:35.
41. Edwards KM, Zhu Y, Griffin MR, et al; New Vaccine Surveillance Network. Burden of human metapneumovirus infection in young children. N Engl J Med. 2013;368:633-643.
42. Liu WK, Liu Q, Chen DH, et al. Epidemiology of acute respiratory infections in children in Guangzhou: a three year study. PLoS One. 2014;9:e96674.
43. Jain A, Pande A, Misra PK, et al. An Indian hospital study of viral causes of acute respiratory infection in children. J Med Microbiol. 1991;35:219-223.
44. Feng L, Lai S, Li F, et al. [Viral etiologies of hospitalized pneumonia patients aged less than five years in six provinces, 2009-2012]. Zhonghua Liu Xing Bing Xue Za Zhi. 2014;35:646-649.
45. Bezerra PG, Britto MC, Correia JB, et al. Viral and atypical bacterial detection in acute respiratory infection in children under five years. PLoS One. 2011;6:e18928.
46. Saikku P, Ruutu P, Leinonen M, et al. Mycoplasma pneumoniae and Chlamydia trachomatis in acute lower respiratory infections in Filipino children. Am J Trop Med Hyg. 1993;49:88-92.
47. Capelastegui A, España PP, Bilbao A, et al; Poblational Study of Pneumonia (PSoP) Group. Etiology of community-acquired pneumonia in a population-based study: link between etiology and patients characteristics, process-of-care, clinical evolution and outcomes. BMC Infect Dis. 2012;12:134.