-
1
-
-
84888638819
-
The microbiome and cancer
-
Schwabe RF, Jobin C (2013) The microbiome and cancer. Nat Rev Cancer 13(11):800-812.
-
(2013)
Nat Rev Cancer
, vol.13
, Issue.11
, pp. 800-812
-
-
Schwabe, R.F.1
Jobin, C.2
-
2
-
-
44649118583
-
Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases
-
Peterson DA, Frank DN, Pace NR, Gordon JI (2008) Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases. Cell Host Microbe 3(6):417-427.
-
(2008)
Cell Host Microbe
, vol.3
, Issue.6
, pp. 417-427
-
-
Peterson, D.A.1
Frank, D.N.2
Pace, N.R.3
Gordon, J.I.4
-
3
-
-
39849102964
-
The role of microbiota in infectious disease
-
Stecher B, Hardt W-D (2008) The role of microbiota in infectious disease. Trends Microbiol 16(3):107-114.
-
(2008)
Trends Microbiol
, vol.16
, Issue.3
, pp. 107-114
-
-
Stecher, B.1
Hardt, W.-D.2
-
4
-
-
84920809160
-
Gut microbiota elicits a protective immune response against malaria transmission
-
Yilmaz B, et al. (2014) Gut microbiota elicits a protective immune response against malaria transmission. Cell 159(6):1277-1289.
-
(2014)
Cell
, vol.159
, Issue.6
, pp. 1277-1289
-
-
Yilmaz, B.1
-
5
-
-
84894118144
-
Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders
-
Hsiao EY, et al. (2013) Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders. Cell 155(7):1451-1463.
-
(2013)
Cell
, vol.155
, Issue.7
, pp. 1451-1463
-
-
Hsiao, E.Y.1
-
6
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh PJ, et al. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444(7122):1027-1031.
-
(2006)
Nature
, vol.444
, Issue.7122
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
-
7
-
-
84858439578
-
The human microbiome: At the interface of health and disease
-
Cho I, Blaser MJ (2012) The human microbiome: At the interface of health and disease. Nat Rev Genet 13(4):260-270.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.4
, pp. 260-270
-
-
Cho, I.1
Blaser, M.J.2
-
8
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Consortium T H MP; Human Microbiome Project Consortium (2012) Structure, function and diversity of the healthy human microbiome. Nature 486(7402):207-214.
-
(2012)
Nature
, vol.486
, Issue.7402
, pp. 207-214
-
-
Human Microbiome Project Consortium1
Consortium, T.H.M.P.2
-
9
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg PB, et al. (2005) Diversity of the human intestinal microbial flora. Science 308(5728):1635-1638.
-
(2005)
Science
, vol.308
, Issue.5728
, pp. 1635-1638
-
-
Eckburg, P.B.1
-
10
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank DN, et al. (2007) Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci USA 104(34):13780-13785.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.34
, pp. 13780-13785
-
-
Frank, D.N.1
-
12
-
-
0035486693
-
Comparative study of bacterial groups within the human cecal and fecal microbiota
-
Marteau P, et al. (2001) Comparative study of bacterial groups within the human cecal and fecal microbiota. Appl Environ Microbiol 67(10):4939-4942.
-
(2001)
Appl Environ Microbiol
, vol.67
, Issue.10
, pp. 4939-4942
-
-
Marteau, P.1
-
13
-
-
0014172961
-
Studies of intestinal microflora. II. Microorganisms of the small intestine and their relation to oral and fecal flora
-
Gorbach SL, et al. (1967) Studies of intestinal microflora. II. Microorganisms of the small intestine and their relation to oral and fecal flora. Gastroenterology 54:856-867.
-
(1967)
Gastroenterology
, vol.54
, pp. 856-867
-
-
Gorbach, S.L.1
-
14
-
-
84867161176
-
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
-
Lozupone C, et al. (2012) Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Res 22(10):1974-1984.
-
(2012)
Genome Res
, vol.22
, Issue.10
, pp. 1974-1984
-
-
Lozupone, C.1
-
15
-
-
65249149643
-
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
-
Mahowald MA, et al. (2009) Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci USA 106(14):5859-5864.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.14
, pp. 5859-5864
-
-
Mahowald, M.A.1
-
16
-
-
58549089276
-
Shotgun metaproteomics of the human distal gut microbiota
-
Verberkmoes NC, et al. (2009) Shotgun metaproteomics of the human distal gut microbiota. ISME J 3(2):179-189.
-
(2009)
ISME J
, vol.3
, Issue.2
, pp. 179-189
-
-
Verberkmoes, N.C.1
-
17
-
-
84887886701
-
Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut
-
Cullender TC, et al. (2013) Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut. Cell Host Microbe 14(5):571-581.
-
(2013)
Cell Host Microbe
, vol.14
, Issue.5
, pp. 571-581
-
-
Cullender, T.C.1
-
18
-
-
2942691956
-
Getting a grip on things: How do communities of bacterial symbionts become established in our intestine?
-
Sonnenburg JL, Angenent LT, Gordon JI (2004) Getting a grip on things: How do communities of bacterial symbionts become established in our intestine? Nat Immunol 5(6):569-573.
-
(2004)
Nat Immunol
, vol.5
, Issue.6
, pp. 569-573
-
-
Sonnenburg, J.L.1
Angenent, L.T.2
Gordon, J.I.3
-
19
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI (2005) Host-bacterial mutualism in the human intestine. Science 307(5717):1915-1920.
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1915-1920
-
-
Bäckhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
20
-
-
84884411052
-
Bacterial colonization factors control specificity and stability of the gut microbiota
-
Lee SM, et al. (2013) Bacterial colonization factors control specificity and stability of the gut microbiota. Nature 501(7467):426-429.
-
(2013)
Nature
, vol.501
, Issue.7467
, pp. 426-429
-
-
Lee, S.M.1
-
21
-
-
84908306828
-
Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota
-
Albenberg L, et al. (2014) Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota. Gastroenterology 147(5):1055-63.e8.
-
(2014)
Gastroenterology
, vol.147
, Issue.5
, pp. 1055e8-1063e8
-
-
Albenberg, L.1
-
22
-
-
84873299448
-
Role of oxygen gradients in shaping redox relationships between the human intestine and its microbiota
-
Espey MG (2013) Role of oxygen gradients in shaping redox relationships between the human intestine and its microbiota. Free Radic Biol Med 55:130-140.
-
(2013)
Free Radic Biol Med
, vol.55
, pp. 130-140
-
-
Espey, M.G.1
-
23
-
-
0036300743
-
Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces
-
Zoetendal EG, et al. (2002) Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol 68(7):3401-3407.
-
(2002)
Appl Environ Microbiol
, vol.68
, Issue.7
, pp. 3401-3407
-
-
Zoetendal, E.G.1
-
24
-
-
76849116160
-
A molecular analysis of fecal and mucosal bacterial communities in irritable bowel syndrome
-
Codling C, O'Mahony L, Shanahan F, Quigley EMM, Marchesi JR (2010) A molecular analysis of fecal and mucosal bacterial communities in irritable bowel syndrome. Dig Dis Sci 55(2):392-397.
-
(2010)
Dig Dis Sci
, vol.55
, Issue.2
, pp. 392-397
-
-
Codling, C.1
O'Mahony, L.2
Shanahan, F.3
Quigley, E.M.M.4
Marchesi, J.R.5
-
26
-
-
0024117598
-
Use of a three-stage continuous culture system to study the effect of mucin on dissimilatory sulfate reduction and methanogenesis by mixed populations of human gut bacteria
-
Gibson GR, Cummings JH, Macfarlane GT (1988) Use of a three-stage continuous culture system to study the effect of mucin on dissimilatory sulfate reduction and methanogenesis by mixed populations of human gut bacteria. Appl Environ Microbiol 54(11):2750-2755.
-
(1988)
Appl Environ Microbiol
, vol.54
, Issue.11
, pp. 2750-2755
-
-
Gibson, G.R.1
Cummings, J.H.2
Macfarlane, G.T.3
-
27
-
-
84355163054
-
Advances and perspectives in in vitro human gut fermentation modeling
-
Payne AN, Zihler A, Chassard C, Lacroix C (2012) Advances and perspectives in in vitro human gut fermentation modeling. Trends Biotechnol 30(1):17-25.
-
(2012)
Trends Biotechnol
, vol.30
, Issue.1
, pp. 17-25
-
-
Payne, A.N.1
Zihler, A.2
Chassard, C.3
Lacroix, C.4
-
28
-
-
84884168072
-
Evaluation of microbial community reproducibility, stability and composition in a human distal gut chemostat model
-
McDonald JAK, et al. (2013) Evaluation of microbial community reproducibility, stability and composition in a human distal gut chemostat model. J Microbiol Methods 95(2):167-174.
-
(2013)
J Microbiol Methods
, vol.95
, Issue.2
, pp. 167-174
-
-
McDonald, J.A.K.1
-
29
-
-
84887627512
-
Bringing the gut microbiota into focus through microbial culture: Recent progress and future perspective
-
Allen-Vercoe E (2013) Bringing the gut microbiota into focus through microbial culture: Recent progress and future perspective. Curr Opin Microbiol 16(5):625-629.
-
(2013)
Curr Opin Microbiol
, vol.16
, Issue.5
, pp. 625-629
-
-
Allen-Vercoe, E.1
-
30
-
-
0033491174
-
A computer-controlled system to simulate conditions of the large intestine with peristaltic mixing, water absorption and absorption of fermentation products
-
Minekus M, et al. (1999) A computer-controlled system to simulate conditions of the large intestine with peristaltic mixing, water absorption and absorption of fermentation products. Appl Microbiol Biotechnol 53(1):108-114.
-
(1999)
Appl Microbiol Biotechnol
, vol.53
, Issue.1
, pp. 108-114
-
-
Minekus, M.1
-
32
-
-
84862207235
-
Human gut-on-A-chip inhabited by microbial flora that experiences intestinal peristalsis-like motions and flow
-
Kim HJ, Huh D, Hamilton G, Ingber DE (2012) Human gut-on-a-chip inhabited by microbial flora that experiences intestinal peristalsis-like motions and flow. Lab Chip 12(12):2165-2174.
-
(2012)
Lab Chip
, vol.12
, Issue.12
, pp. 2165-2174
-
-
Kim, H.J.1
Huh, D.2
Hamilton, G.3
Ingber, D.E.4
-
33
-
-
84882627623
-
Gut-on-A-Chip microenvironment induces human intestinal cells to undergo villus differentiation
-
Kim HJ, Ingber DE (2013) Gut-on-a-Chip microenvironment induces human intestinal cells to undergo villus differentiation. Integr Biol (Camb) 5(9):1130-1140.
-
(2013)
Integr Biol (Camb)
, vol.5
, Issue.9
, pp. 1130-1140
-
-
Kim, H.J.1
Ingber, D.E.2
-
34
-
-
84953273098
-
Contributions of microbiome and mechanical deformation to intestinal bacterial overgrowth and inflammation in a human gut-onachip
-
Kim HJ, Li H, Collins JJ, Ingber DE (2016) Contributions of microbiome and mechanical deformation to intestinal bacterial overgrowth and inflammation in a human gut-onachip. Proc Natl Acad Sci USA 113(1):E7-E15.
-
(2016)
Proc Natl Acad Sci USA
, vol.113
, Issue.1
, pp. E7-E15
-
-
Kim, H.J.1
Li, H.2
Collins, J.J.3
Ingber, D.E.4
-
35
-
-
0343827125
-
Population dynamics and non-Hermitian localization
-
Springer, Berlin
-
Dahmen KA, Nelson DR, Shnerb NM (1999) Population dynamics and non-Hermitian localization. Statistical Mechanics of Biocomplexity, Lecture Notes in Physics (Springer, Berlin), pp 124-151.
-
(1999)
Statistical Mechanics of Biocomplexity, Lecture Notes in Physics
, pp. 124-151
-
-
Dahmen, K.A.1
Nelson, D.R.2
Shnerb, N.M.3
-
37
-
-
0001639179
-
The growth of bacterial cultures
-
Monod J (1949) The growth of bacterial cultures. Annu Rev Microbiol 3(1):371-394.
-
(1949)
Annu Rev Microbiol
, vol.3
, Issue.1
, pp. 371-394
-
-
Monod, J.1
-
38
-
-
0034615958
-
Monolithic microfabricated valves and pumps by multilayer soft lithography
-
Unger MA, Chou HP, Thorsen T, Scherer A, Quake SR (2000) Monolithic microfabricated valves and pumps by multilayer soft lithography. Science 288(5463):113-116.
-
(2000)
Science
, vol.288
, Issue.5463
, pp. 113-116
-
-
Unger, M.A.1
Chou, H.P.2
Thorsen, T.3
Scherer, A.4
Quake, S.R.5
-
39
-
-
84975833307
-
Effect of xylanases on ileal viscosity, intestinal fiber modification, and apparent ileal fiber and nutrient digestibility of rye and wheat in growing pigs
-
Lærke HN, Arent S, Dalsgaard S, Bach Knudsen KE (2015) Effect of xylanases on ileal viscosity, intestinal fiber modification, and apparent ileal fiber and nutrient digestibility of rye and wheat in growing pigs. J Anim Sci 93(9):4323-4335.
-
(2015)
J Anim Sci
, vol.93
, Issue.9
, pp. 4323-4335
-
-
Lærke, H.N.1
Arent, S.2
Dalsgaard, S.3
Bach Knudsen, K.E.4
-
40
-
-
34247882011
-
Interactions and competition within the microbial community of the human colon: Links between diet and health
-
Flint HJ, Duncan SH, Scott KP, Louis P (2007) Interactions and competition within the microbial community of the human colon: Links between diet and health. Environ Microbiol 9(5):1101-1111.
-
(2007)
Environ Microbiol
, vol.9
, Issue.5
, pp. 1101-1111
-
-
Flint, H.J.1
Duncan, S.H.2
Scott, K.P.3
Louis, P.4
-
41
-
-
33646585117
-
Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut
-
Belenguer A, et al. (2006) Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut. Appl Environ Microbiol 72(5):3593-3599.
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.5
, pp. 3593-3599
-
-
Belenguer, A.1
-
42
-
-
0026516301
-
Production, metabolism, and excretion of hydrogen in the large intestine
-
Christl SU, Murgatroyd PR, Gibson GR, Cummings JH (1992) Production, metabolism, and excretion of hydrogen in the large intestine. Gastroenterology 102(4 Pt 1):1269-1277.
-
(1992)
Gastroenterology
, vol.102
, Issue.4
, pp. 1269-1277
-
-
Christl, S.U.1
Murgatroyd, P.R.2
Gibson, G.R.3
Cummings, J.H.4
-
45
-
-
0027240434
-
Fluid loading of the human colon: Effects on segmental transit and stool composition
-
Hammer J, Phillips SF (1993) Fluid loading of the human colon: Effects on segmental transit and stool composition. Gastroenterology 105(4):988-998.
-
(1993)
Gastroenterology
, vol.105
, Issue.4
, pp. 988-998
-
-
Hammer, J.1
Phillips, S.F.2
-
46
-
-
84876468494
-
Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice
-
Kashyap PC, et al. (2013) Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice. Gastroenterology 144(5):967-977.
-
(2013)
Gastroenterology
, vol.144
, Issue.5
, pp. 967-977
-
-
Kashyap, P.C.1
-
48
-
-
0023693299
-
Measurement of gastrointestinal pH profiles in normal ambulant human subjects
-
Evans DF, et al. (1988) Measurement of gastrointestinal pH profiles in normal ambulant human subjects. Gut 29(8):1035-1041.
-
(1988)
Gut
, vol.29
, Issue.8
, pp. 1035-1041
-
-
Evans, D.F.1
-
49
-
-
0001555399
-
Description of the chemostat
-
Novick A, Szilard L (1950) Description of the chemostat. Science 112(2920):715-716.
-
(1950)
Science
, vol.112
, Issue.2920
, pp. 715-716
-
-
Novick, A.1
Szilard, L.2
|