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Volumn 16, Issue 1, 2016, Pages

Cirrhosis related functionality characteristic of the fecal microbiota as revealed by a metaproteomic approach

Author keywords

BCAA; Cirrhosis; Fecal microbiota; Metaproteome

Indexed keywords

BRANCHED CHAIN AMINO ACID; COENZYME A; PANTOTHENIC ACID;

EID: 84990032834     PISSN: None     EISSN: 1471230X     Source Type: Journal    
DOI: 10.1186/s12876-016-0534-0     Document Type: Article
Times cited : (37)

References (26)
  • 3
    • 84947274561 scopus 로고    scopus 로고
    • Gut microbiota and host metabolism in liver cirrhosis
    • Usami M, Miyoshi M, Yamashita H. Gut microbiota and host metabolism in liver cirrhosis. World J Gastroenterol. 2015;21:11597-608.
    • (2015) World J Gastroenterol. , vol.21 , pp. 11597-11608
    • Usami, M.1    Miyoshi, M.2    Yamashita, H.3
  • 4
    • 1842453220 scopus 로고    scopus 로고
    • Gut microflora in the pathogenesis of the complications of cirrhosis
    • Garcia-Tsao G, Wiest R. Gut microflora in the pathogenesis of the complications of cirrhosis. Best Pract Res Clin Gastroenterol. 2004;18:353-72.
    • (2004) Best Pract Res Clin Gastroenterol , vol.18 , pp. 353-372
    • Garcia-Tsao, G.1    Wiest, R.2
  • 5
    • 84861194312 scopus 로고    scopus 로고
    • Gut microbiome and intestinal barrier failure--the "Achilles heel" in hepatology?
    • Benten D, Wiest R. Gut microbiome and intestinal barrier failure--the "Achilles heel" in hepatology? J Hepatol. 2012;56:1221-3.
    • (2012) J Hepatol , vol.56 , pp. 1221-1223
    • Benten, D.1    Wiest, R.2
  • 6
    • 79960714764 scopus 로고    scopus 로고
    • Characterization of fecal microbial communities in patients with liver cirrhosis
    • Chen Y, Yang F, Lu H, Wang B, Chen Y, Lei D, et al. Characterization of fecal microbial communities in patients with liver cirrhosis. Hepatol Baltim Md. 2011;54:562-72.
    • (2011) Hepatol Baltim Md , vol.54 , pp. 562-572
    • Chen, Y.1    Yang, F.2    Lu, H.3    Wang, B.4    Chen, Y.5    Lei, D.6
  • 7
    • 54349126970 scopus 로고    scopus 로고
    • High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota
    • Zoetendal EG, Rajilic-Stojanovic M, de Vos WM. High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut. 2008;57:1605-15.
    • (2008) Gut , vol.57 , pp. 1605-1615
    • Zoetendal, E.G.1    Rajilic-Stojanovic, M.2    de Vos, W.M.3
  • 9
    • 4344646435 scopus 로고    scopus 로고
    • The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms
    • Wilmes P, Bond PL. The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms. Environ Microbiol. 2004;6:911-20.
    • (2004) Environ Microbiol , vol.6 , pp. 911-920
    • Wilmes, P.1    Bond, P.L.2
  • 10
    • 84880453978 scopus 로고    scopus 로고
    • Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity
    • Hernández E, Bargiela R, Diez MS, Friedrichs A, Pérez-Cobas AE, Gosalbes MJ, et al. Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity. Gut Microbes. 2013;4:306-15.
    • (2013) Gut Microbes , vol.4 , pp. 306-315
    • Hernández, E.1    Bargiela, R.2    Diez, M.S.3    Friedrichs, A.4    Pérez-Cobas, A.E.5    Gosalbes, M.J.6
  • 11
    • 84923915405 scopus 로고    scopus 로고
    • Gut microbiota disturbance during antibiotic therapy: a multi-omic approach
    • Ferrer M, Martins dos Santos VAP, Ott SJ, Moya A. Gut microbiota disturbance during antibiotic therapy: a multi-omic approach. Gut Microbes. 2014;5:64-70.
    • (2014) Gut Microbes , vol.5 , pp. 64-70
    • Ferrer, M.1    Martins dos Santos, V.A.P.2    Ott, S.J.3    Moya, A.4
  • 12
    • 84855915896 scopus 로고    scopus 로고
    • Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions
    • Kolmeder CA, de Been M, Nikkilä J, Ritamo I, Mättö J, Valmu L, et al. Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions. PLoS One. 2012;7:e29913.
    • (2012) PLoS One , vol.7
    • Kolmeder, C.A.1    de Been, M.2    Nikkilä, J.3    Ritamo, I.4    Mättö, J.5    Valmu, L.6
  • 13
    • 33847177982 scopus 로고    scopus 로고
    • Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract
    • Klaassens ES, de Vos WM, Vaughan EE. Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract. Appl Environ Microbiol. 2007;73:1388-92.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1388-1392
    • Klaassens, E.S.1    de Vos, W.M.2    Vaughan, E.E.3
  • 14
    • 34548178909 scopus 로고    scopus 로고
    • In-gel digestion for mass spectrometric characterization of proteins and proteomes
    • Shevchenko A, Tomas H, Havlis J, Olsen JV, Mann M. In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat Protoc. 2006;1:2856-60.
    • (2006) Nat Protoc , vol.1 , pp. 2856-2860
    • Shevchenko, A.1    Tomas, H.2    Havlis, J.3    Olsen, J.V.4    Mann, M.5
  • 15
    • 77951785241 scopus 로고    scopus 로고
    • Subnuclear proteomics in colorectal cancer: identification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression
    • Albrethsen J, Knol JC, Piersma SR, Pham TV, de Wit M, Mongera S, et al. Subnuclear proteomics in colorectal cancer: identification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression. Mol Cell Proteomics MCP. 2010;9:988-1005.
    • (2010) Mol Cell Proteomics MCP , vol.9 , pp. 988-1005
    • Albrethsen, J.1    Knol, J.C.2    Piersma, S.R.3    Pham, T.V.4    de Wit, M.5    Mongera, S.6
  • 17
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • Tatusov RL, Galperin MY, Natale DA, Koonin EV. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 2000;28:33-6.
    • (2000) Nucleic Acids Res , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 18
    • 39949084468 scopus 로고    scopus 로고
    • iPath: interactive exploration of biochemical pathways and networks
    • Letunic I, Yamada T, Kanehisa M, Bork P. iPath: interactive exploration of biochemical pathways and networks. Trends Biochem Sci. 2008;33:101-3.
    • (2008) Trends Biochem Sci , vol.33 , pp. 101-103
    • Letunic, I.1    Yamada, T.2    Kanehisa, M.3    Bork, P.4
  • 19
    • 77954199597 scopus 로고    scopus 로고
    • PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
    • Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, et al. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinforma Oxf Engl. 2010;26:1608-15.
    • (2010) Bioinforma Oxf Engl , vol.26 , pp. 1608-1615
    • Yu, N.Y.1    Wagner, J.R.2    Laird, M.R.3    Melli, G.4    Rey, S.5    Lo, R.6
  • 20
    • 80053345905 scopus 로고    scopus 로고
    • SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat
    • Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods. 2011;8:785-6.
    • (2011) Methods , vol.8 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    von Heijne, G.3    Nielsen, H.4
  • 21
    • 84890923127 scopus 로고    scopus 로고
    • Abnormal fecal microbiota community and functions in patients with hepatitis B liver cirrhosis as revealed by a metagenomic approach
    • Wei X, Yan X, Zou D, Yang Z, Wang X, Liu W, et al. Abnormal fecal microbiota community and functions in patients with hepatitis B liver cirrhosis as revealed by a metagenomic approach. BMC Gastroenterol. 2013;13:175.
    • (2013) BMC Gastroenterol , vol.13 , pp. 175
    • Wei, X.1    Yan, X.2    Zou, D.3    Yang, Z.4    Wang, X.5    Liu, W.6
  • 22
    • 65449149031 scopus 로고    scopus 로고
    • Structure and functions of keratin proteins in simple, stratified, keratinized and cornified epithelia
    • Bragulla HH, Homberger DG. Structure and functions of keratin proteins in simple, stratified, keratinized and cornified epithelia. J Anat. 2009;214:516-59.
    • (2009) J Anat , vol.214 , pp. 516-559
    • Bragulla, H.H.1    Homberger, D.G.2
  • 23
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010;464:59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3    Arumugam, M.4    Burgdorf, K.S.5    Manichanh, C.6
  • 24
    • 30944466824 scopus 로고    scopus 로고
    • Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
    • Manichanh C, Rigottier-Gois L, Bonnaud E, Gloux K, Pelletier E, Frangeul L, et al. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut. 2006;55:205-11.
    • (2006) Gut , vol.55 , pp. 205-211
    • Manichanh, C.1    Rigottier-Gois, L.2    Bonnaud, E.3    Gloux, K.4    Pelletier, E.5    Frangeul, L.6
  • 26
    • 35348957400 scopus 로고    scopus 로고
    • Redirecting metabolic fluxes through cofactor engineering: Role of CoA-esters pool during L(-)-carnitine production by Escherichia coli
    • Bernal V, Masdemont B, Arense P, Cánovas M, Iborra JL. Redirecting metabolic fluxes through cofactor engineering: Role of CoA-esters pool during L(-)-carnitine production by Escherichia coli. J Biotechnol. 2007;132:110-7.
    • (2007) J Biotechnol , vol.132 , pp. 110-117
    • Bernal, V.1    Masdemont, B.2    Arense, P.3    Cánovas, M.4    Iborra, J.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.