메뉴 건너뛰기




Volumn 17, Issue 10, 2016, Pages 1410-1421

Capture-C reveals preformed chromatin interactions between HIF-binding sites and distant promoters

Author keywords

Capture C; chromatin; cis interaction; HIF; Hypoxia

Indexed keywords

HYPOXIA INDUCIBLE FACTOR; VON WILLEBRAND FACTOR;

EID: 84989945553     PISSN: 1469221X     EISSN: 14693178     Source Type: Journal    
DOI: 10.15252/embr.201642198     Document Type: Article
Times cited : (58)

References (48)
  • 1
    • 31444444162 scopus 로고    scopus 로고
    • Integration of oxygen signaling at the consensus HRE
    • Wenger RH, Stiehl DP, Camenisch G (2005) Integration of oxygen signaling at the consensus HRE. Sci STKE 2005: re12
    • (2005) Sci STKE , vol.2005 , pp. re12
    • Wenger, R.H.1    Stiehl, D.P.2    Camenisch, G.3
  • 2
    • 84856739946 scopus 로고    scopus 로고
    • Hypoxia-inducible factors in physiology and medicine
    • Semenza GL (2012) Hypoxia-inducible factors in physiology and medicine. Cell 148: 399–408
    • (2012) Cell , vol.148 , pp. 399-408
    • Semenza, G.L.1
  • 3
    • 77952300971 scopus 로고    scopus 로고
    • Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction
    • Ortiz-Barahona A, Villar D, Pescador N, Amigo J, del Peso L (2010) Genome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction. Nucleic Acids Res 38: 2332–2345
    • (2010) Nucleic Acids Res , vol.38 , pp. 2332-2345
    • Ortiz-Barahona, A.1    Villar, D.2    Pescador, N.3    Amigo, J.4    del Peso, L.5
  • 10
    • 80755153672 scopus 로고    scopus 로고
    • Chromatin as an oxygen sensor and active player in the hypoxia response
    • Melvin A, Rocha S (2012) Chromatin as an oxygen sensor and active player in the hypoxia response. Cell Signal 24: 35–43
    • (2012) Cell Signal , vol.24 , pp. 35-43
    • Melvin, A.1    Rocha, S.2
  • 11
    • 79960785531 scopus 로고    scopus 로고
    • Epigenetics: new questions on the response to hypoxia
    • Perez-Perri JI, Acevedo JM, Wappner P (2011) Epigenetics: new questions on the response to hypoxia. Int J Mol Sci 12: 4705–4721
    • (2011) Int J Mol Sci , vol.12 , pp. 4705-4721
    • Perez-Perri, J.I.1    Acevedo, J.M.2    Wappner, P.3
  • 12
    • 84887463065 scopus 로고    scopus 로고
    • Epigenetic regulation of hypoxia-responsive gene expression: focusing on chromatin and DNA modifications
    • Tsai YP, Wu KJ (2014) Epigenetic regulation of hypoxia-responsive gene expression: focusing on chromatin and DNA modifications. Int J Cancer 134: 249–256
    • (2014) Int J Cancer , vol.134 , pp. 249-256
    • Tsai, Y.P.1    Wu, K.J.2
  • 14
    • 84958117511 scopus 로고    scopus 로고
    • Pharmacological targeting of the HIF hydroxylases - A new field in medicine development
    • Chan MC, Holt-Martyn JP, Schofield CJ, Ratcliffe PJ (2016) Pharmacological targeting of the HIF hydroxylases - A new field in medicine development. Mol Aspects Med 47–48: 54–75
    • (2016) Mol Aspects Med , vol.47-48 , pp. 54-75
    • Chan, M.C.1    Holt-Martyn, J.P.2    Schofield, C.J.3    Ratcliffe, P.J.4
  • 15
    • 84933183002 scopus 로고    scopus 로고
    • Anaemia in kidney disease: harnessing hypoxia responses for therapy
    • Koury MJ, Haase VH (2015) Anaemia in kidney disease: harnessing hypoxia responses for therapy. Nat Rev Nephrol 11: 394–410
    • (2015) Nat Rev Nephrol , vol.11 , pp. 394-410
    • Koury, M.J.1    Haase, V.H.2
  • 23
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485: 376–380
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 27
    • 65249150266 scopus 로고    scopus 로고
    • Glucocorticoid receptor activation of the Ciz1-Lcn2 locus by long range interactions
    • Hakim O, John S, Ling JQ, Biddie SC, Hoffman AR, Hager GL (2009) Glucocorticoid receptor activation of the Ciz1-Lcn2 locus by long range interactions. J Biol Chem 284: 6048–6052
    • (2009) J Biol Chem , vol.284 , pp. 6048-6052
    • Hakim, O.1    John, S.2    Ling, J.Q.3    Biddie, S.C.4    Hoffman, A.R.5    Hager, G.L.6
  • 30
  • 32
    • 38649128173 scopus 로고    scopus 로고
    • Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus
    • Jing H, Vakoc CR, Ying L, Mandat S, Wang H, Zheng X, Blobel GA (2008) Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus. Mol Cell 29: 232–242
    • (2008) Mol Cell , vol.29 , pp. 232-242
    • Jing, H.1    Vakoc, C.R.2    Ying, L.3    Mandat, S.4    Wang, H.5    Zheng, X.6    Blobel, G.A.7
  • 35
    • 84929629148 scopus 로고    scopus 로고
    • Distinct von Hippel-Lindau gene and hypoxia-regulated alterations in gene and protein expression patterns of renal cell carcinoma and their effects on metabolism
    • Leisz S, Schulz K, Erb S, Oefner P, Dettmer K, Mougiakakos D, Wang E, Marincola FM, Stehle F, Seliger B (2015) Distinct von Hippel-Lindau gene and hypoxia-regulated alterations in gene and protein expression patterns of renal cell carcinoma and their effects on metabolism. Oncotarget 6: 11395–11406
    • (2015) Oncotarget , vol.6 , pp. 11395-11406
    • Leisz, S.1    Schulz, K.2    Erb, S.3    Oefner, P.4    Dettmer, K.5    Mougiakakos, D.6    Wang, E.7    Marincola, F.M.8    Stehle, F.9    Seliger, B.10
  • 37
    • 84882239297 scopus 로고    scopus 로고
    • Pan-genomic binding of hypoxia-inducible transcription factors
    • Schodel J, Mole DR, Ratcliffe PJ (2013) Pan-genomic binding of hypoxia-inducible transcription factors. Biol Chem 394: 507–517
    • (2013) Biol Chem , vol.394 , pp. 507-517
    • Schodel, J.1    Mole, D.R.2    Ratcliffe, P.J.3
  • 38
    • 33947528891 scopus 로고    scopus 로고
    • Von Hippel-Lindau disease
    • Kaelin WG (2007) Von Hippel-Lindau disease. Annu Rev Pathol 2: 145–173
    • (2007) Annu Rev Pathol , vol.2 , pp. 145-173
    • Kaelin, W.G.1
  • 41
    • 0035852630 scopus 로고    scopus 로고
    • Role of transforming growth factor-alpha in von Hippel-Lindau (VHL)(-/-) clear cell renal carcinoma cell proliferation: a possible mechanism coupling VHL tumor suppressor inactivation and tumorigenesis
    • de Paulsen N, Brychzy A, Fournier MC, Klausner RD, Gnarra JR, Pause A, Lee S (2001) Role of transforming growth factor-alpha in von Hippel-Lindau (VHL)(-/-) clear cell renal carcinoma cell proliferation: a possible mechanism coupling VHL tumor suppressor inactivation and tumorigenesis. Proc Natl Acad Sci USA 98: 1387–1392
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 1387-1392
    • de Paulsen, N.1    Brychzy, A.2    Fournier, M.C.3    Klausner, R.D.4    Gnarra, J.R.5    Pause, A.6    Lee, S.7
  • 42
    • 34247219188 scopus 로고    scopus 로고
    • Target gene selectivity of hypoxia-inducible factor-alpha in renal cancer cells is conveyed by post-DNA-binding mechanisms
    • Lau KW, Tian YM, Raval RR, Ratcliffe PJ, Pugh CW (2007) Target gene selectivity of hypoxia-inducible factor-alpha in renal cancer cells is conveyed by post-DNA-binding mechanisms. Br J Cancer 96: 1284–1292
    • (2007) Br J Cancer , vol.96 , pp. 1284-1292
    • Lau, K.W.1    Tian, Y.M.2    Raval, R.R.3    Ratcliffe, P.J.4    Pugh, C.W.5
  • 46
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106
    • (2010) Genome Biol , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 47
    • 38449113722 scopus 로고    scopus 로고
    • Quasi-Poisson vs. negative binomial regression: how should we model overdispersed count data?
    • Ver Hoef JM, Boveng PL (2007) Quasi-Poisson vs. negative binomial regression: how should we model overdispersed count data? Ecology 88: 2766–2772
    • (2007) Ecology , vol.88 , pp. 2766-2772
    • Ver Hoef, J.M.1    Boveng, P.L.2
  • 48
    • 33747595466 scopus 로고    scopus 로고
    • Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies
    • Sun L, Craiu RV, Paterson AD, Bull SB (2006) Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies. Genet Epidemiol 30: 519–530
    • (2006) Genet Epidemiol , vol.30 , pp. 519-530
    • Sun, L.1    Craiu, R.V.2    Paterson, A.D.3    Bull, S.B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.