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Volumn 96, Issue 3, 2015, Pages 236-244

Rhodopsin Gene Polymorphism Associated with Divergent Light Environments in Atlantic Cod

Author keywords

Atlantic cod; Behaviour type; Divergence; Ecotype; Pantophysin; Rhodopsin

Indexed keywords

DNA; OPSIN; PANTHOPHYSIN; RHODOPSIN; TAQ POLYMERASE; UNCLASSIFIED DRUG; VISUAL PIGMENT; 3' UNTRANSLATED REGION; MICROSATELLITE DNA; SYNAPTOPHYSIN;

EID: 84989768801     PISSN: 0171967X     EISSN: 14320827     Source Type: Journal    
DOI: 10.1007/s10519-014-9701-7     Document Type: Article
Times cited : (17)

References (52)
  • 1
    • 49649129741 scopus 로고    scopus 로고
    • LOSITAN: a workbench to detect molecular adaptation based on a FST-outlier method
    • Antao L, Lopes A, Lopes RJ, Beja-Pereira A, Luikart G (2008) LOSITAN: a workbench to detect molecular adaptation based on a FST-outlier method. BMC Bioinform 9:323–327
    • (2008) BMC Bioinform , vol.9 , pp. 323-327
    • Antao, L.1    Lopes, A.2    Lopes, R.J.3    Beja-Pereira, A.4    Luikart, G.5
  • 2
    • 0030467524 scopus 로고    scopus 로고
    • Evaluating loci for use in the genetic analysis of population structure
    • Beaumont M, Nichols RA (1996) Evaluating loci for use in the genetic analysis of population structure. Proc Roy Soc Lond B 263:1619–1626
    • (1996) Proc Roy Soc Lond B , vol.263 , pp. 1619-1626
    • Beaumont, M.1    Nichols, R.A.2
  • 3
    • 0000222328 scopus 로고
    • Organisation of microsatellites differs between mammals and cold-water teleost fishes
    • Brooker AL, Cook AM, Bentzen P, Wright JM, Doyle RW (1994) Organisation of microsatellites differs between mammals and cold-water teleost fishes. Can J Fish Aquat Sci 51:1959–1966
    • (1994) Can J Fish Aquat Sci , vol.51 , pp. 1959-1966
    • Brooker, A.L.1    Cook, A.M.2    Bentzen, P.3    Wright, J.M.4    Doyle, R.W.5
  • 4
    • 0034695624 scopus 로고    scopus 로고
    • Pantophysin is a phosphoprotein component of adipocyte transport vesicles and associates with GLUT4-containing vesicles
    • PID: 10636906
    • Brooks CC, Scherer PE, Cleveland K, Whittemore JL, Lodish HF, Cheatham B (2000) Pantophysin is a phosphoprotein component of adipocyte transport vesicles and associates with GLUT4-containing vesicles. J Biol Chem 275:2029–2036
    • (2000) J Biol Chem , vol.275 , pp. 2029-2036
    • Brooks, C.C.1    Scherer, P.E.2    Cleveland, K.3    Whittemore, J.L.4    Lodish, H.F.5    Cheatham, B.6
  • 5
    • 0037331904 scopus 로고    scopus 로고
    • Repeatability of clades as criterion of reliability: a case study for molecular phylogeny of Acantomorpha (Teleostei) with large number of taxa
    • Chen WJ, Bonillo C, Lecointre G (2003) Repeatability of clades as criterion of reliability: a case study for molecular phylogeny of Acantomorpha (Teleostei) with large number of taxa. Mol Phylogenetics Evol 26:262–288
    • (2003) Mol Phylogenetics Evol , vol.26 , pp. 262-288
    • Chen, W.J.1    Bonillo, C.2    Lecointre, G.3
  • 6
    • 84882759440 scopus 로고    scopus 로고
    • STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
    • Earl DA, vonHoldt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4:359–361
    • (2012) Conserv Genet Resour , vol.4 , pp. 359-361
    • Earl, D.A.1    vonHoldt, B.M.2
  • 7
    • 70349859862 scopus 로고    scopus 로고
    • Rhodopsin population genetics and local adaptation: variable dim-light vision in sand gobies is illuminated
    • PID: 19857228
    • Ebert D, Andrew RL (2009) Rhodopsin population genetics and local adaptation: variable dim-light vision in sand gobies is illuminated. Mol Ecol 18:4140–4142
    • (2009) Mol Ecol , vol.18 , pp. 4140-4142
    • Ebert, D.1    Andrew, R.L.2
  • 8
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • PID: 15969739
    • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 9
    • 0031282584 scopus 로고    scopus 로고
    • Genetic divergence at the synaptophysin (Syp I) locus among Norwegian coastal and North-east Arctic populations of Atlantic cod
    • Fevolden SE, Pogson GH (1997) Genetic divergence at the synaptophysin (Syp I) locus among Norwegian coastal and North-east Arctic populations of Atlantic cod. J Fish Biol 51:895–908
    • (1997) J Fish Biol , vol.51 , pp. 895-908
    • Fevolden, S.E.1    Pogson, G.H.2
  • 10
    • 0033864080 scopus 로고    scopus 로고
    • Migratory behaviour of north-east Arctic cod, studied by use of data storage tags
    • Godo OR, Michalsen K (2000) Migratory behaviour of north-east Arctic cod, studied by use of data storage tags. Fish Res 48:127–140
    • (2000) Fish Res , vol.48 , pp. 127-140
    • Godo, O.R.1    Michalsen, K.2
  • 11
    • 79952334356 scopus 로고    scopus 로고
    • Evidence of segregated spawning in a single marine fish stock: sympatric divergence of ecotypes in Icelandic cod?
    • PID: 21408180
    • Grabowski TB, Thorsteinsson V, McAdam BJ, Marteinsdottir G (2011) Evidence of segregated spawning in a single marine fish stock: sympatric divergence of ecotypes in Icelandic cod? PLoS ONE 6:e17528
    • (2011) PLoS ONE , vol.6
    • Grabowski, T.B.1    Thorsteinsson, V.2    McAdam, B.J.3    Marteinsdottir, G.4
  • 14
    • 84924183778 scopus 로고
    • Marine optics. Elsevier, Amsterdam, pp 232
    • Jerlov N (1976) Marine optics. Elsevier, Amsterdam, pp 232. ISBN 0-444-41 490-8
    • (1976) ISBN 0-444-41 , pp. 490-498
    • Jerlov, N.1
  • 16
    • 77952682719 scopus 로고    scopus 로고
    • Differential modes of selection on the rhodopsin gene in coastal Baltic and North Sea populations of the sand goby, Pomatoschistus minutus
    • PID: 20444083
    • Larmuseau MHD, Vancampenhout KIM, Raeymaekers JAM, Van Houdt JKJ, Volckaert FAM (2010) Differential modes of selection on the rhodopsin gene in coastal Baltic and North Sea populations of the sand goby, Pomatoschistus minutus. Mol Ecol 19:2256–2268
    • (2010) Mol Ecol , vol.19 , pp. 2256-2268
    • Larmuseau, M.H.D.1    Vancampenhout, K.I.M.2    Raeymaekers, J.A.M.3    Van Houdt, J.K.J.4    Volckaert, F.A.M.5
  • 17
    • 0002907949 scopus 로고
    • The interaction of selection and linkage. 1. General considerations; Heterotic models
    • PID: 17248194
    • Lewontin RC (1964) The interaction of selection and linkage. 1. General considerations; Heterotic models. Genetics 49:49–67
    • (1964) Genetics , vol.49 , pp. 49-67
    • Lewontin, R.C.1
  • 18
    • 0000951097 scopus 로고
    • The evolutionary dynamics of complex polymorphism
    • Lewontin RC, Kojima K (1960) The evolutionary dynamics of complex polymorphism. Evolution 14:458–472
    • (1960) Evolution , vol.14 , pp. 458-472
    • Lewontin, R.C.1    Kojima, K.2
  • 20
    • 0034143524 scopus 로고    scopus 로고
    • Development of tri- and tetranucleotide repeat microsatellite loci in Atlantic cod (Gadus morhua)
    • PID: 10672170
    • Miller KM, Le KD, Beacham TD (2000) Development of tri- and tetranucleotide repeat microsatellite loci in Atlantic cod (Gadus morhua). Mol Ecol 9:238–239
    • (2000) Mol Ecol , vol.9 , pp. 238-239
    • Miller, K.M.1    Le, K.D.2    Beacham, T.D.3
  • 22
    • 0041173340 scopus 로고    scopus 로고
    • Coastal cod and north-east Arctic cod—do they mingle at the spawning grounds in Lofoten?
    • Nordeide JT (1998) Coastal cod and north-east Arctic cod—do they mingle at the spawning grounds in Lofoten? Sarsia 83:373–379
    • (1998) Sarsia , vol.83 , pp. 373-379
    • Nordeide, J.T.1
  • 23
    • 77953072579 scopus 로고    scopus 로고
    • Novel set of multiplex assays (SalPrint15) for efficient analysis of 15 microsatellite loci of contemporary samples of the Atlantic salmon (Salmo salar)
    • PID: 21565052
    • Ólafsson K, Hjörleifsdóttir S, Pampoulie C, Hreggviðsson GÓ, Guðjónsson S (2010) Novel set of multiplex assays (SalPrint15) for efficient analysis of 15 microsatellite loci of contemporary samples of the Atlantic salmon (Salmo salar). Mol Ecol Resour 10:533–537
    • (2010) Mol Ecol Resour , vol.10 , pp. 533-537
    • Ólafsson, K.1    Hjörleifsdóttir, S.2    Pampoulie, C.3    Hreggviðsson, G.4    Guðjónsson, S.5
  • 25
    • 0033821950 scopus 로고    scopus 로고
    • Isolation of twenty low stutter di- and tetranucleotide microsatellites for population analyses of walleye pollock and other gadoids
    • O’Reilly PT, Canino MF, Bailey KM, Bentzen P (2000) Isolation of twenty low stutter di- and tetranucleotide microsatellites for population analyses of walleye pollock and other gadoids. J Fish Biol 56:1074–1086
    • (2000) J Fish Biol , vol.56 , pp. 1074-1086
    • O’Reilly, P.T.1    Canino, M.F.2    Bailey, K.M.3    Bentzen, P.4
  • 26
    • 10744231248 scopus 로고    scopus 로고
    • Migration patterns, ambient temperature, and growth of Icelandic cod (Gadus morhua): evidence from storage tag data
    • Pálsson ÓK, Thorsteinsson V (2003) Migration patterns, ambient temperature, and growth of Icelandic cod (Gadus morhua): evidence from storage tag data. Can J Fish Aquat Sci 60:1409–1423
    • (2003) Can J Fish Aquat Sci , vol.60 , pp. 1409-1423
    • Pálsson, K.1    Thorsteinsson, V.2
  • 28
    • 38649112638 scopus 로고    scopus 로고
    • Are vertical behaviour patterns related to the pantophysin locus in the Atlantic cod (Gadus morhua L.)?
    • PID: 17978867
    • Pampoulie C, Jakobsdóttir KB, Marteinsdóttir G, Thorsteinsson V (2008) Are vertical behaviour patterns related to the pantophysin locus in the Atlantic cod (Gadus morhua L.)? Behav Genet 38:76–81
    • (2008) Behav Genet , vol.38 , pp. 76-81
    • Pampoulie, C.1    Jakobsdóttir, K.B.2    Marteinsdóttir, G.3    Thorsteinsson, V.4
  • 29
    • 34250212837 scopus 로고    scopus 로고
    • How do synonymous mutations affect fitness?
    • PID: 17508390
    • Parmley JL, Hurst LD (2007) How do synonymous mutations affect fitness? BioEssays 29:515–519
    • (2007) BioEssays , vol.29 , pp. 515-519
    • Parmley, J.L.1    Hurst, L.D.2
  • 30
    • 1242284666 scopus 로고    scopus 로고
    • Positive Darwinian selection at the pantophysin (Pan I) locus in marine gadid fishes
    • Pogson GH, Mesa KA (2004) Positive Darwinian selection at the pantophysin (Pan I) locus in marine gadid fishes. Mol Biol Evol 2165–2175
    • (2004) Mol Biol Evol , pp. 2165-2175
    • Pogson, G.H.1    Mesa, K.A.2
  • 31
    • 0028860163 scopus 로고
    • Genetic population structure and gene flow in the Atlantic cod Gadus morhua: a comparison of allozyme and nuclear RFLP loci
    • PID: 7705638
    • Pogson GH, Mesa KA, Boutilier RG (1995) Genetic population structure and gene flow in the Atlantic cod Gadus morhua: a comparison of allozyme and nuclear RFLP loci. Genetics 139:375–385
    • (1995) Genetics , vol.139 , pp. 375-385
    • Pogson, G.H.1    Mesa, K.A.2    Boutilier, R.G.3
  • 32
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • PID: 10835412
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 33
    • 36849080837 scopus 로고    scopus 로고
    • Genepop’007: a complete re-implementation of the genepop software for Windows and Linux
    • PID: 21585727
    • Rousset F (2008) Genepop’007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour 8:103–106
    • (2008) Mol Ecol Resour , vol.8 , pp. 103-106
    • Rousset, F.1
  • 34
    • 25144493911 scopus 로고    scopus 로고
    • Pantophysin (Pan I) locus divergence between inshore v. offshore and northern v. southern populations of Atlantic cod in the North-east Atlantic
    • Sarvas TH, Fevolden SE (2005) Pantophysin (Pan I) locus divergence between inshore v. offshore and northern v. southern populations of Atlantic cod in the North-east Atlantic. J Fish Biol 67:444–469
    • (2005) J Fish Biol , vol.67 , pp. 444-469
    • Sarvas, T.H.1    Fevolden, S.E.2
  • 35
    • 84924155650 scopus 로고    scopus 로고
    • Divergence by depth in an oceanic fish
    • PID: 25165634
    • Shum P, Pampoulie C, Sacchi C, Mariani S (2014) Divergence by depth in an oceanic fish. PeerJ 2:e525
    • (2014) PeerJ , vol.2 , pp. 525
    • Shum, P.1    Pampoulie, C.2    Sacchi, C.3    Mariani, S.4
  • 36
    • 77954073378 scopus 로고    scopus 로고
    • Paralle amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth
    • PID: 20345807
    • Sivasundar A, Palumbi SR (2010) Paralle amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth. J Evol Biol 23:1159–1169
    • (2010) J Evol Biol , vol.23 , pp. 1159-1169
    • Sivasundar, A.1    Palumbi, S.R.2
  • 37
    • 34447096144 scopus 로고    scopus 로고
    • Comparing microsatellite variation in north-east Atlantic cod (Gadus morhua L.) to genetic structuring as revealed by the pantophysin (Pan I) locus
    • Skarstein TH, Westgaard JI, Fevolden SE (2007) Comparing microsatellite variation in north-east Atlantic cod (Gadus morhua L.) to genetic structuring as revealed by the pantophysin (Pan I) locus. J Fish Biol 70:271–290
    • (2007) J Fish Biol , vol.70 , pp. 271-290
    • Skarstein, T.H.1    Westgaard, J.I.2    Fevolden, S.E.3
  • 39
    • 33747827929 scopus 로고    scopus 로고
    • SNPStats: a web tool for the analysis of association studies
    • PID: 16720584
    • Solé X, Guinó E, Valls J, Iniesta R, Moreno V (2006) SNPStats: a web tool for the analysis of association studies. Bioinformatics 22:1928–1929
    • (2006) Bioinformatics , vol.22 , pp. 1928-1929
    • Solé, X.1    Guinó, E.2    Valls, J.3    Iniesta, R.4    Moreno, V.5
  • 40
  • 41
    • 33644855340 scopus 로고    scopus 로고
    • Genotyping of pantophysin I (Pan I) of Atlantic cod (Gadus morhua L.) by allele-specific PCR
    • Stenvik J, Wesmajervi MS, Damsgard B, Delghandi M (2006) Genotyping of pantophysin I (Pan I) of Atlantic cod (Gadus morhua L.) by allele-specific PCR. Mol Ecol Notes 6:272–275
    • (2006) Mol Ecol Notes , vol.6 , pp. 272-275
    • Stenvik, J.1    Wesmajervi, M.S.2    Damsgard, B.3    Delghandi, M.4
  • 42
    • 17244374513 scopus 로고    scopus 로고
    • Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from lakes Tanganyika and Malawi
    • PID: 15809435
    • Sugawara T, Terai Y, Imai H, Turner GF, Koblmuller S, Sturmbauer C, Shichida Y, Okada N (2005) Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from lakes Tanganyika and Malawi. Proc Natl Acad Sci 102:5448–5453
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 5448-5453
    • Sugawara, T.1    Terai, Y.2    Imai, H.3    Turner, G.F.4    Koblmuller, S.5    Sturmbauer, C.6    Shichida, Y.7    Okada, N.8
  • 45
    • 84865440927 scopus 로고    scopus 로고
    • Consistency in the behaviour types of the Atlantic cod: repeatability, timing of migration and geo-location
    • Thorsteinsson V, Pálsson ÓK, Jónsdóttir IG, Pampoulie C (2012) Consistency in the behaviour types of the Atlantic cod: repeatability, timing of migration and geo-location. Mar Ecol Prog Ser 462:251–260
    • (2012) Mar Ecol Prog Ser , vol.462 , pp. 251-260
    • Thorsteinsson, V.1    Pálsson, K.2    Jónsdóttir, I.G.3    Pampoulie, C.4
  • 47
    • 84924195236 scopus 로고    scopus 로고
    • Ecosystems of the deep oceans, 1st edn
    • Tyler PA (2003) Ecosystems of the deep oceans, 1st edn, Elsevier p 532
    • (2003) Elsevier p 532
    • Tyler, P.A.1
  • 48
    • 84875254678 scopus 로고    scopus 로고
    • Are synonymous codons indeed synonymous?
    • Venetianer P (2012) Are synonymous codons indeed synonymous? Biol Mol Concepts 3:21–28
    • (2012) Biol Mol Concepts , vol.3 , pp. 21-28
    • Venetianer, P.1
  • 49
    • 4344573708 scopus 로고    scopus 로고
    • Vision in the deep sea
    • PID: 15366767
    • Warrant EJ, Locket NA (2004) Vision in the deep sea. Biol Rev 79:671–712
    • (2004) Biol Rev , vol.79 , pp. 671-712
    • Warrant, E.J.1    Locket, N.A.2
  • 50
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 51
    • 6344268959 scopus 로고    scopus 로고
    • The molecular basis of adaptive evolution of Squirrelfish rhodopsins
    • PID: 15269277
    • Yokoyama S, Takenaka N (2004) The molecular basis of adaptive evolution of Squirrelfish rhodopsins. Mol Biol Evol 21:2071–2078
    • (2004) Mol Biol Evol , vol.21 , pp. 2071-2078
    • Yokoyama, S.1    Takenaka, N.2
  • 52
    • 51649122492 scopus 로고    scopus 로고
    • Elucidation of phenotypic adaptations: molecular analyses of dim-light vision proteins in vertebrates
    • PID: 18768804
    • Yokoyama S, Tada T, Zhang H, Britt L (2008) Elucidation of phenotypic adaptations: molecular analyses of dim-light vision proteins in vertebrates. Proc Natl Acad Sci 105:13480–13485
    • (2008) Proc Natl Acad Sci , vol.105 , pp. 13480-13485
    • Yokoyama, S.1    Tada, T.2    Zhang, H.3    Britt, L.4


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