메뉴 건너뛰기




Volumn 2014, Issue 1, 2014, Pages

Divergence by depth in an oceanic fish

Author keywords

Adaptation; Deep sea; Environmental gradient; Rhodopsin; Sebastes; Vision

Indexed keywords

EXONUCLEASE; MITOCHONDRIAL DNA; RHODOPSIN;

EID: 84924155650     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.525     Document Type: Article
Times cited : (21)

References (41)
  • 1
    • 0033280235 scopus 로고    scopus 로고
    • Ancient species flocks and recent speciation events: what can rockfish teach us about cichlids (and vice versa)?
    • Alesandrini S, Bernardi G. 1999. Ancient species flocks and recent speciation events: what can rockfish teach us about cichlids (and vice versa)? Journal of Molecular Evolution 49:814-818
    • (1999) Journal of Molecular Evolution , vol.49 , pp. 814-818
    • Alesandrini, S.1    Bernardi, G.2
  • 4
    • 79955635867 scopus 로고    scopus 로고
    • Diversification of sympatric broadcast-spawning limpets (Cellana spp ) within the Hawaiian archipelago
    • Bird CE, Holland BS, Bowen BW, Toonen RJ. 2011. Diversification of sympatric broadcast-spawning limpets (Cellana spp.) within the Hawaiian archipelago. Molecular Ecology 20:2128-2141
    • (2011) Molecular Ecology , vol.20 , pp. 2128-2141
    • Bird, C.E.1    Holland, B.S.2    Bowen, B.W.3    Toonen, R.J.4
  • 5
  • 6
    • 84872327677 scopus 로고    scopus 로고
    • Phylogenetic relationships among North Atlantic redfish (genus Sebastes) as revealed by mitochondrial DNA sequence analysis
    • Bunke C, Hanel R, Trautner JH. 2012. Phylogenetic relationships among North Atlantic redfish (genus Sebastes) as revealed by mitochondrial DNA sequence analysis. Journal of Applied Ichthyology 29:82-92
    • (2012) Journal of Applied Ichthyology , vol.29 , pp. 82-92
    • Bunke, C.1    Hanel, R.2    Trautner, J.H.3
  • 8
    • 0037331904 scopus 로고    scopus 로고
    • Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa
    • ChenW-J, Bonillo C, Lecointre G. 2003. Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa. Molecular Phylogenetics and Evolution 26:262-288
    • (2003) Molecular Phylogenetics and Evolution , vol.26 , pp. 262-288
    • Chen, W.-J.1    Bonillo, C.2    Lecointre, G.3
  • 9
    • 0037202384 scopus 로고    scopus 로고
    • An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences
    • Creevey CJ,McInerney JO. 2002. An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences. Gene 300:43-51
    • (2002) Gene , vol.300 , pp. 43-51
    • Creevey, C.J.1    McInerney, J.O.2
  • 10
    • 0141626870 scopus 로고    scopus 로고
    • CRANN: detecting adaptive evolution in protein-coding DNA sequences
    • Creevey CJ,McInerney JO. 2003. CRANN: detecting adaptive evolution in protein-coding DNA sequences. Bioinformatics 19:1726
    • (2003) Bioinformatics , vol.19 , pp. 1726
    • Creevey, C.J.1    McInerney, J.O.2
  • 11
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3 5: a new series of programs to perform population genetics analyses under Linux and Windows
    • Excoffier L, Lischer HE. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:564-567
    • (2010) Molecular Ecology Resources , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.2
  • 13
    • 0242416123 scopus 로고    scopus 로고
    • Perspective: models of speciation: what have we learned in 40 years?
    • Gavrilets S. 2003. Perspective: models of speciation: what have we learned in 40 years? Evolution 57:2197-2215
    • (2003) Evolution , vol.57 , pp. 2197-2215
    • Gavrilets, S.1
  • 14
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59:307-321
    • (2010) Systematic Biology , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 15
    • 38849141585 scopus 로고    scopus 로고
    • Cryptic speciation in the vermilion rockfish (Sebastes miniatus) and the role of bathymetry in the speciation process
    • Hyde JR, Kimbrell CA, Budrick JE, Lynn EA, Vetter RD. 2008. Cryptic speciation in the vermilion rockfish (Sebastes miniatus) and the role of bathymetry in the speciation process. Molecular Ecology 17:1122-1136
    • (2008) Molecular Ecology , vol.17 , pp. 1122-1136
    • Hyde, J.R.1    Kimbrell, C.A.2    Budrick, J.E.3    Lynn, E.A.4    Vetter, R.D.5
  • 16
    • 34447250534 scopus 로고    scopus 로고
    • The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier)
    • Hyde J, Vetter RD. 2007. The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier). Molecular Phylogenetics and Evolution 44:790-811
    • (2007) Molecular Phylogenetics and Evolution , vol.44 , pp. 790-811
    • Hyde, J.1    Vetter, R.D.2
  • 18
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 19
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, Kreitman M. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 20
    • 0024284028 scopus 로고
    • A simple salting out procedure for extracting DNA from human nucleated cells
    • Miller SA, Dykes DD, Polesky HF. 1988. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 16:1215
    • (1988) Nucleic Acids Research , vol.16 , pp. 1215
    • Miller, S.A.1    Dykes, D.D.2    Polesky, H.F.3
  • 22
    • 79952129837 scopus 로고    scopus 로고
    • The roles of transmembrane domain Helix-III during rhodopsin photoactivation
    • Ou WB, Yi T, Kim JM, Khorana HG. 2011. The roles of transmembrane domain Helix-III during rhodopsin photoactivation. PLoS ONE 6:e17398
    • (2011) PLoS ONE , vol.6
    • Ou, W.B.1    Yi, T.2    Kim, J.M.3    Khorana, H.G.4
  • 23
    • 47749118758 scopus 로고    scopus 로고
    • Resolving species identification problems in the genus Sebastes using nuclear genetic markers
    • Pampoulie C, Daníelsdóttir AK. 2008. Resolving species identification problems in the genus Sebastes using nuclear genetic markers. Fisheries Research 93:54-63
    • (2008) Fisheries Research , vol.93 , pp. 54-63
    • Pampoulie, C.1    Daníelsdóttir, A.K.2
  • 24
    • 35448963931 scopus 로고    scopus 로고
    • Pillars of Hercules: Is the Atlantic-Mediterranean transition a phylogeographical break?
    • Patarnello T, Volckaert F, Castilho R. 2007. Pillars of Hercules: Is the Atlantic-Mediterranean transition a phylogeographical break? Molecular Ecology 16:4426-4444
    • (2007) Molecular Ecology , vol.16 , pp. 4426-4444
    • Patarnello, T.1    Volckaert, F.2    Castilho, R.3
  • 25
    • 33644871292 scopus 로고    scopus 로고
    • Genalex 6 genetic analysis in Excel Population genetic software for teaching and research
    • Peakall R, Smouse PE. 2006. Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6:288-295
    • (2006) Molecular Ecology Notes , vol.6 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 26
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 28
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9:552-569
    • (1992) Molecular Biology and Evolution , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 29
    • 84857821991 scopus 로고    scopus 로고
    • Biocomplexity in a demersal exploited fish, white hake (Urophycis tenuis): depth-related structure and inadequacy of current management approaches
    • Roy D, Hurlbut TR, Ruzzante DE. 2012. Biocomplexity in a demersal exploited fish, white hake (Urophycis tenuis): depth-related structure and inadequacy of current management approaches. Canadian Journal of Fisheries and Aquatic Sciences 69:415-429
    • (2012) Canadian Journal of Fisheries and Aquatic Sciences , vol.69 , pp. 415-429
    • Roy, D.1    Hurlbut, T.R.2    Ruzzante, D.E.3
  • 30
    • 79954569167 scopus 로고    scopus 로고
    • The performance of phylogenetic algorithms in estimating haplotype genealogies with migration
    • Salzburger W, Ewing GB, von Haeseler A. 2011. The performance of phylogenetic algorithms in estimating haplotype genealogies with migration. Molecular Ecology 20:1952-1963
    • (2011) Molecular Ecology , vol.20 , pp. 1952-1963
    • Salzburger, W.1    Ewing, G.B.2    von Haeseler, A.3
  • 31
    • 77954073378 scopus 로고    scopus 로고
    • Parallel amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth
    • Sivasundar A, Palumbi SR. 2010. Parallel amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth. Journal of Evolutionary Biology 23:1159-1169
    • (2010) Journal of Evolutionary Biology , vol.23 , pp. 1159-1169
    • Sivasundar, A.1    Palumbi, S.R.2
  • 32
    • 82955193766 scopus 로고    scopus 로고
    • A framework for comparing processes of speciation in the presence of gene flow
    • Smadja CM, Butlin RK. 2011. A framework for comparing processes of speciation in the presence of gene flow. Molecular Ecology 20:5123-5140
    • (2011) Molecular Ecology , vol.20 , pp. 5123-5140
    • Smadja, C.M.1    Butlin, R.K.2
  • 33
    • 77952906089 scopus 로고    scopus 로고
    • Structure and activation of the visual pigment rhodopsin
    • Smith SO. 2010. Structure and activation of the visual pigment rhodopsin. Annual Review of Biophysics 39:309-328
    • (2010) Annual Review of Biophysics , vol.39 , pp. 309-328
    • Smith, S.O.1
  • 34
    • 0026583113 scopus 로고
    • Adaptations to high hydrostatic pressure
    • Somero GN. 1992. Adaptations to high hydrostatic pressure. Annual Review of Physiology 54:557-577
    • (1992) Annual Review of Physiology , vol.54 , pp. 557-577
    • Somero, G.N.1
  • 39
    • 0034002482 scopus 로고    scopus 로고
    • Molecular evolution of vertebrate visual pigments
    • Yokoyama S. 2000. Molecular evolution of vertebrate visual pigments. Progress in Retinal and Eye Research 19:385-419
    • (2000) Progress in Retinal and Eye Research , vol.19 , pp. 385-419
    • Yokoyama, S.1
  • 40
    • 0037202369 scopus 로고    scopus 로고
    • Molecular evolution of color vision in vertebrates
    • Yokoyama S. 2002. Molecular evolution of color vision in vertebrates. Gene 300:69-78
    • (2002) Gene , vol.300 , pp. 69-78
    • Yokoyama, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.