Comparing microsatellite variation in north-east Atlantic cod (Gadus morhua L.) to genetic structuring as revealed by the pantophysin (Pan I) locus

Journal of Fish Biology

Volumn 70, Issue SUPPL. C, 2007, Pages 271-290

  Skarstein, T H ^a   Westgaard, J I ^a   Fevolden, S E ^a  

^a UNIVERSITY OF TROMSØ   (Norway)

Author keywords

Gadus morhua; Gene flow; Microsatellites; Pantophysin; Population structure; Selection

Indexed keywords

BOREOGADUS; GADUS MORHUA;

EID: 34447096144     PISSN: 00221112     EISSN: 10958649     Source Type: Journal    
DOI: 10.1111/j.1095-8649.2007.01456.x     Document Type: Article

References (52)

1. Beacham, T. D., Brattey, J., Miller, K. M., Le, K. D. Withler, R. E 2002). Multiple stock structure of Atlantic cod (Gadus morhua) off Newfoundland and Labrador determined from genetic variation. ICES Journal of Marine Science 59, 650 665.
2. Beaumont, M. A. Nichols, R. A 1996). Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society of London B 263, 1619 1626.
3. Bentzen, P., Taggart, C. T., Ruzzante, D. E. Cook, D 1996). Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the northwest Atlantic. Canadian Journal of Fisheries and Aquatic Sciences 53, 2706 2721.
4. Berg, E., Sarvas, T. H., Harbitz, A., Fevolden, S. E. Salberg, A. B 2005). Accuracy and precision in stock separation of north-east Arctic and Norwegian coastal cod by otoliths - comparing readings, image analyses and a genetic method. Marine and Freshwater Research 56, 753 762.
5. Bergstad, O. A., Jørgensen, T. Dragesund, O 1987). Life history and ecology of the gadoid resources of the Barents Sea. Fisheries Research 5, 119 161.
6. Brooker, A. L., Cook, D., Bentzen, P., Wright, J. M. Doyle, R. W 1994). Organization of microsatellites differs between mammals and cold-water teleost fishes. Canadian Journal of Fisheries and Aquatic Sciences 51, 1959 1966.
7. Canino, M. F. Bentzen, P 2004). Evidence for positive selection at the pantophysin (Pan I) locus in walleye pollock, Theragra chalcogramma. Molecular Biology and Evolution 21, 1391 1400.
8. Canino, M. F., O'Reilly, P. T., Hauser, L. Bentzen, P 2005). Genetic differentiation in walleye pollock (Theragra chalcogramma) in response to selection at the pantophysin (PanI) locus. Canadian Journal of Fisheries and Aquatic Sciences 62, 2519 2529.
9. Carvalho, G. R. Hauser, L 1998). Advances in the molecular analysis of fish population structure. Italian Journal of Zoology 65, 21 33.
10. Case, R. A. J., Hutchinson, W. F., Hauser, L., Van Oosterhout, C. Carvalho, G. R 2005). Macro- and micro-geographic variation in pantophysin (PanI) allele frequencies in NE Atlantic cod Gadus morhua. Marine Ecology Progress Series 301, 267 278.
11. Delghandi, M., Mortensen, A. Westgaard, J. I 2003). Simultaneous analysis of six microsatellite markers in Atlantic cod (Gadus morhua): a novel multiplex assay system for use in selective breeding studies. Marine Biotechnology 5, 141 148.
12. Ferguson, A 1994). Molecular genetics in fisheries: current and future perspectives. Reviews in Fish Biology and Fisheries 4, 379 383.
13. Fevolden, S. E. Pogson, G. H 1997). Genetic divergence at the synaptophysin (SypI) locus among Norwegian coastal and north-east Arctic populations of Atlantic cod. Journal of Fish Biology 51, 895 908.
14. Frydenberg, O., Møller, D., Nævdal, G. Sick, K 1965). Haemoglobin polymorphism in Norwegian cod populations. Hereditas 53, 257 271.
15. Godø, O. R 1986). Dispersion and mingling of cod from various nursery and feeding areas along the Norwegian coast and in the Barents Sea. In A Workshop on Comparative Biology, Assessment and Management of Gadoids from the North Pacific and Atlantic Oceans (Alton, M., ed pp. 663 672. Seattle, WA : Northwest and Alaska Fisheries Center.
16. Goudet, J 1995). FSTAT (Version 1.2): a computer program to calculate F-statistics. Journal of Heredity 86, 485 486.
17. Hedrick, P. W 2005). A standardized genetic differentiation measure. Evolution 59, 1633 1638.
18. Hutchinson, W. F., Carvalho, G. R. Rogers, S. I 2001). Marked genetic structuring in localised spawning populations of cod Gadus morhua in the North Sea and adjoining waters, as revealed by microsatellites. Marine Ecology Progress Series 223, 251 260.
19. Hutchinson, W. F., van Oosterhout, C., Rogers, S. I. Carvalho, G. R 2003). Temporal analysis of archived samples indicates marked genetic changes in declining North Sea cod (Gadus morhua). Proceedings of the Royal Society of London B 270, 2125 2132.
20. ICES (2005). Report of the ICES Advisory Committee on Fishery Management, Advisory Committee on Marine Environment and Advisory Committee on Ecosystems, 2005. ICES Advice 1-11, 1418.
21. Jakobsen, T 1987). Coastal cod in northern Norway. Fisheries Research 5, 223 234.
22. Karlsson, S. Mork, J 2003). Selection-induced variation at the pantophysin locus (PanI) in a Norwegian fjord population of cod (Gadus morhua L.). Molecular Ecology 12, 3265 3274.
23. Knutsen, H., Jorde, P. E., Andre, C. Stenseth, N. C 2003). Fine-scaled geographical population structuring in a highly mobile marine species: the Atlantic cod. Molecular Ecology 12, 385 394.
24. Knutsen, H., Andre, C., Jorde, P. E., Skogen, M. D., Thuroczy, E. Stenseth, N. C 2004). Transport of North Sea cod larvae into the Skagerrak coastal populations. Proceedings of the Royal Society of London B 271, 1337 1344.
25. Miller, S. A., Dykes, D. D. Polesky, H. F 1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 16, 1215.
26. Miller, K. M., Le, K. D. Beacham, T. D 2000). Development of tri- and tetranucleotide repeat microsatellite loci in Atlantic cod (Gadus morhua). Molecular Ecology 9, 238 239.
27. Møller, D 1968). Genetic diversity in spawning cod along the Norwegian coast. Hereditas 60, 1 32.
28. Nielsen, E. E., Hansen, M. M., Schmidt, C., Meldrup, D. Grønskjær, P 2001). Population origin of Atlantic cod. Nature 413, 272.
29. Nielsen, E. E., Hansen, M. M., Ruzzante, D. E., Meldrup, D. Gronkjaer, P 2003). Evidence of a hybrid-zone in Atlantic cod (Gadus morhua) in the Baltic and the Danish Belt Sea revealed by individual admixture analysis. Molecular Ecology 12, 1497 1508.
30. Nordeide, J. T 1998). Coastal cod and northeast Arctic cod: do they mingle at the spawning grounds in Lofoten? Sarsia 83, 373 379.
31. O'Connell, M. Wright, J. M 1997). Microsatellite DNA in fishes. Reviews in Fish Biology and Fisheries 7, 331 363.
32. O'Reilly, P. T., Canino, M. F., Bailey, K. M. Bentzen, P 2000). Isolation of twenty low stutter di- and tetranucleotide microsatellites for population analyses of walleye pollock and other gadoids. Journal of Fish Biology 56, 1074 1086.
33. Pogson, G. H 2001). Nucleotide polymorphism and natural selection at the pantophysin (Pan I) locus in the Atlantic cod, Gadus morhua (L.). Genetics 157, 317 330.
34. Pogson, G. H. Fevolden, S. E 1998). DNA heterozygosity and growth rate in the Atlantic cod Gadus morhua (L.). Evolution 52, 915 920.
35. Pogson, G. H. Fevolden, S. E 2003). Natural selection and the genetic differentiation of coastal and Arctic populations of the Atlantic cod in northern Norway: a test involving nucleotide sequence variation at the pantophysin (Pan I) locus. Molecular Ecology 12, 63 74.
36. Pogson, G. H. Mesa, K. A 2004). Positive Darwinian selection at the pantophysin (Pan I) locus in marine gadid fishes. Molecular Biology and Evolution 21, 65 75.
37. Pogson, G. H., Mesa, K. A. Boutilier, R. G 1995). Genetic population structure and gene flow in the Atlantic cod Gadus Morhua: a comparison of allozyme and nuclear RFLP loci. Genetics 139, 375 385.
38. Poulsen, N. A., Nielsen, E. E., Schierup, M. H., Loeschcke, V. Gronkjaer, P 2006). Long-term stability and effective population size in North Sea and Baltic Sea cod (Gadus morhua). Molecular Ecology 15, 321 331.
39. Raymond, M. Rousset, F 1995). Genepop (Version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86, 248 249.
40. Rice, W. R 1989). Analyzing tables of statistical tests. Evolution 43, 223 225.
41. Ruddiman, W. F. McIntyre, A 1981). The North-Atlantic Ocean during the last deglaciation. Palaeogeography Palaeoclimatology Palaeoecology 35, 145 214.
42. Ruzzante, D. E 1998). A comparison of several measures of genetic distance and population structure with microsatellite data: bias and sampling variance. Canadian Journal of Fisheries and Aquatic Sciences 55, 1 14.
43. Ruzzante, D. E., Taggart, C. T., Cook, C. Goddard, S. V 1996). Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) off Newfoundland: microsatellite DNA variation and antifreeze level. Canadian Journal of Fisheries and Aquatic Sciences 53, 634 645.
44. Ruzzante, D. E., Taggart, C. T. Cook, D 1998). A nuclear DNA basis for shelf- and bank-scale population structure in northwest Atlantic cod (Gadus morhua): Labrador to Georges Bank. Molecular Ecology 7, 1663 1680.
45. Ruzzante, D. E., Wroblewski, J. S., Taggart, C. T., Smedbol, R. K., Cook, D. Goddard, S. V 2000). Bay-scale population structure in coastal Atlantic cod in Labrador and Newfoundland, Canada. Canadian Journal of Fisheries and Aquatic Sciences 56, 431 447.
46. Sarvas, T. H. Fevolden, S. E 2005a). Pantophysin (PanI) locus divergence between inshore v. offshore and northern v. southern populations of Atlantic cod in the north-east Atlantic. Journal of Fish Biology 67, 444 469.
47. Sarvas, T. H. Fevolden, S. E 2005b). The scnDNA locus Pan I reveals concurrent presence of different populations of Atlantic cod (Gadus morhua L.) within a single fjord. Fisheries Research 76, 307 316.
48. Schlotterer, C 2000). Evolutionary dynamics of microsatellite DNA. Chromosoma 109, 365 371.
49. Schneider, S., Kueffer, J.-M., Roessli, D. Excoffier, L 2000). Arlequin ver. 1.1: a software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
50. Taylor, M. F. J., Shen, Y. Kreitman, M. E 1995). A population genetic test of selection at the molecular level. Science 270, 1497 1499.
51. Van Oosterhout, C., Hutchinson, W. F., Wills, D. P. M. Shipley, P 2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4, 535 538.
52. Weir, B. S. Cockerham, C. C 1984). Estimating F-statistics for the analysis of population structure. Evolution 38, 1358 1370.