메뉴 건너뛰기




Volumn 21, Issue 11, 2004, Pages 2071-2078

The molecular basis of adaptive evolution of squirrelfish rhodopsins

Author keywords

Adaptive evolution; Rhodopsin; Squirrelfishes

Indexed keywords

ALANINE; GLUTAMINE; METHIONINE; PHENYLALANINE; PIGMENT; RHODOPSIN; SERINE; TYROSINE;

EID: 6344268959     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh217     Document Type: Article
Times cited : (34)

References (40)
  • 2
    • 0026661975 scopus 로고
    • Introduction of hydroxyl-bearing amino acids causes bathochromatic spectral shifts in rhodopsin: Amino acid substitutions responsible for red-green color pigment spectral tuning
    • Chan, T., M. Lee, and T. P. Sakmar. 1992. Introduction of hydroxyl-bearing amino acids causes bathochromatic spectral shifts in rhodopsin: amino acid substitutions responsible for red-green color pigment spectral tuning. J. Biol. Chem. 267:9478-9480.
    • (1992) J. Biol. Chem. , vol.267 , pp. 9478-9480
    • Chan, T.1    Lee, M.2    Sakmar, T.P.3
  • 3
    • 0026068785 scopus 로고
    • Visual pigments. The scotopic photoreceptors and their visual pigments of fishes: Functions and adaptations
    • Crescitelli, F. 1991. Visual pigments. The scotopic photoreceptors and their visual pigments of fishes: functions and adaptations. Vision Res. 31:339-348.
    • (1991) Vision Res. , vol.31 , pp. 339-348
    • Crescitelli, F.1
  • 5
    • 0037188415 scopus 로고    scopus 로고
    • Spectral tuning in the mammalian short wavelength sensitive cone pigments
    • Fasick, J. I., M. L. Applebury, and D. D. Oprian. 2002. Spectral tuning in the mammalian short wavelength sensitive cone pigments. Biochemistry 41:6860-6865.
    • (2002) Biochemistry , vol.41 , pp. 6860-6865
    • Fasick, J.I.1    Applebury, M.L.2    Oprian, D.D.3
  • 6
    • 0032512420 scopus 로고    scopus 로고
    • Mechanism of spectral tuning in the dolphin visual pigments
    • Fasick, J. I., and P. R. Robinson. 1998. Mechanism of spectral tuning in the dolphin visual pigments. Biochemistry 37:432-438.
    • (1998) Biochemistry , vol.37 , pp. 432-438
    • Fasick, J.I.1    Robinson, P.R.2
  • 7
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 8
    • 0028351942 scopus 로고
    • An analysis of two spectral properties of vertebrate visual pigments
    • Harosi, F. I. 1994. An analysis of two spectral properties of vertebrate visual pigments. Vision Res. 34:1359-1367.
    • (1994) Vision Res. , vol.34 , pp. 1359-1367
    • Harosi, F.I.1
  • 9
    • 0029922071 scopus 로고    scopus 로고
    • Spectral tuning and molecular evolution of rod visual pigments in the species flock of Cottoid fish in lake Baikal
    • Hunt, D. M., J. Fitzgibbon, S. J. Slobodyanyuk, and J. K. Bowmaker. 1996. Spectral tuning and molecular evolution of rod visual pigments in the species flock of Cottoid fish in lake Baikal. Vision Res. 36:1217-1224.
    • (1996) Vision Res. , vol.36 , pp. 1217-1224
    • Hunt, D.M.1    Fitzgibbon, J.2    Slobodyanyuk, S.J.3    Bowmaker, J.K.4
  • 11
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 12
    • 0032580152 scopus 로고    scopus 로고
    • A molecular time scale for vertebrate evolution
    • Kumar, S., and S. B. Hedges. 1998. A molecular time scale for vertebrate evolution. Nature 392:917-919.
    • (1998) Nature , vol.392 , pp. 917-919
    • Kumar, S.1    Hedges, S.B.2
  • 15
    • 0015806973 scopus 로고
    • The significance of spectral position in the rhodopsins of tropical marine fishes
    • Munz, F. W., and W. N. McFarland. 1973. The significance of spectral position in the rhodopsins of tropical marine fishes. Vision Res. 13:1829-1874.
    • (1973) Vision Res. , vol.13 , pp. 1829-1874
    • Munz, F.W.1    McFarland, W.N.2
  • 18
    • 3042513751 scopus 로고    scopus 로고
    • A novel amino acid substitution is responsible for spectral tuning in a rodent violet-sensitive visual pigment
    • Parry, J. W. L., S. Poopalasundaram, J. K. Bowmaker, and D. M. Hunt. 2004. A novel amino acid substitution is responsible for spectral tuning in a rodent violet-sensitive visual pigment. Biochemistry 43:8014-8020.
    • (2004) Biochemistry , vol.43 , pp. 8014-8020
    • Parry, J.W.L.1    Poopalasundaram, S.2    Bowmaker, J.K.3    Hunt, D.M.4
  • 19
    • 0026613694 scopus 로고
    • Vitamin A2-based visual pigments in fully terrestrial vertebrates
    • Provencio, I., E. R. Loew, and R. G. Foster. 1992. Vitamin A2-based visual pigments in fully terrestrial vertebrates. Vision Res. 32:2201-2208.
    • (1992) Vision Res. , vol.32 , pp. 2201-2208
    • Provencio, I.1    Loew, E.R.2    Foster, R.G.3
  • 20
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 21
    • 0035949547 scopus 로고    scopus 로고
    • Molecular genetics and the evolution of ultraviolet vision in vertebrates
    • Shi, Y., F. B. Radilwimmer, and S. Yokoyama. 2001. Molecular genetics and the evolution of ultraviolet vision in vertebrates. Proc. Natl. Acad. Sci. USA 98:11731-11736.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 11731-11736
    • Shi, Y.1    Radilwimmer, F.B.2    Yokoyama, S.3
  • 22
    • 0038261973 scopus 로고    scopus 로고
    • Molecular analysis of the evolutionary significance of ultraviolet vision in vertebrates
    • Shi, Y., and S. Yokoyama. 2003. Molecular analysis of the evolutionary significance of ultraviolet vision in vertebrates. Proc. Natl. Acad. Sci. USA 100:8308-8313.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 8308-8313
    • Shi, Y.1    Yokoyama, S.2
  • 23
    • 0030786395 scopus 로고    scopus 로고
    • Mechanisms of spectral tuning in the mouse green cone pigments
    • Sun, H., J. P. Macke, and J. Nathans. 1997. Mechanisms of spectral tuning in the mouse green cone pigments. Proc. Natl. Acad. Sci. USA 94:8860-8865.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 8860-8865
    • Sun, H.1    Macke, J.P.2    Nathans, J.3
  • 24
    • 0032849322 scopus 로고    scopus 로고
    • A method for detecting positive selection at single amino acid sites
    • Suzuki, Y., and T. Gojobori. 1999. A method for detecting positive selection at single amino acid sites. Mol. Biol. Evol. 16:1315-1328.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1315-1328
    • Suzuki, Y.1    Gojobori, T.2
  • 25
    • 0035215112 scopus 로고    scopus 로고
    • Reliabilities of parsimony-based and likelihood methods for detecting positive selection at single amino acid sites
    • Suzuki, Y., and M. Nei. 2001. Reliabilities of parsimony-based and likelihood methods for detecting positive selection at single amino acid sites. Mol. Biol. Evol. 18:2179-2185.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2179-2185
    • Suzuki, Y.1    Nei, M.2
  • 26
    • 1942533483 scopus 로고    scopus 로고
    • False positive selection identified by ML-based methods: Examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotrophic virus
    • -. 2004. False positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotrophic virus. Mol. Biol. Evol. 21:914-921.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 914-921
  • 27
    • 0012394062 scopus 로고    scopus 로고
    • Molecular basis of spectral tuning in the newt short wavelength sensitive visual pigments
    • Takahashi, Y., and T. G. Ebrey. 2003. Molecular basis of spectral tuning in the newt short wavelength sensitive visual pigments. Biochemistry 42:6025-6034.
    • (2003) Biochemistry , vol.42 , pp. 6025-6034
    • Takahashi, Y.1    Ebrey, T.G.2
  • 29
    • 0024851866 scopus 로고
    • Seasonal variation in cone sensitivity and short-wave absorbing visual pigments in the rudd Scadinius erythrophythalmus
    • Whitmore, A. V., and J. K. Bowmaker. 1989. Seasonal variation in cone sensitivity and short-wave absorbing visual pigments in the rudd Scadinius erythrophythalmus. J. Comp. Physiol. A 166:103-115.
    • (1989) J. Comp. Physiol. A , vol.166 , pp. 103-115
    • Whitmore, A.V.1    Bowmaker, J.K.2
  • 31
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 32
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acids
    • Yang, Z., R. Nielsen, N. Goldman, and A.-M. Krabbe Pedersen. 2000. Codon-substitution models for heterogeneous selection pressure at amino acids. Genetics 155:431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Krabbe Pedersen, A.-M.4
  • 33
    • 0028953871 scopus 로고
    • Rhodopsin from the fish, Astyanax: Role of tyrosine 261 in the red shift
    • Yokoyama, R., B. E. Knox, and S. Yokoyama. 1995. Rhodopsin from the fish, Astyanax: role of tyrosine 261 in the red shift. Invest. Ophthalmol. Vision Sci. 36:939-945.
    • (1995) Invest. Ophthalmol. Vision Sci. , vol.36 , pp. 939-945
    • Yokoyama, R.1    Knox, B.E.2    Yokoyama, S.3
  • 34
    • 0028835362 scopus 로고
    • Amino acid replacements and wavelength absorption of visual pigments in vertebrates
    • Yokoyama, S. 1995. Amino acid replacements and wavelength absorption of visual pigments in vertebrates. Mol. Biol. Evol. 12:53-61.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 53-61
    • Yokoyama, S.1
  • 35
    • 0034002482 scopus 로고    scopus 로고
    • Molecular evolution of vertebrate visual pigments
    • -. 2000a. Molecular evolution of vertebrate visual pigments. Prog. Retin. Eye Res. 19:385-419.
    • (2000) Prog. Retin. Eye Res. , vol.19 , pp. 385-419
  • 36
    • 0034089338 scopus 로고    scopus 로고
    • Phylogenetic analysis and experimental approaches to study color vision in vertebrates
    • -. 2000b. Phylogenetic analysis and experimental approaches to study color vision in vertebrates. Methods Enzymol. 315:312-325.
    • (2000) Methods Enzymol. , vol.315 , pp. 312-325
  • 37
    • 0032875635 scopus 로고    scopus 로고
    • The molecular genetics of red and green color vision in mammals
    • Yokoyama, S., and F. B. Radlwimmer. 2001. The molecular genetics of red and green color vision in mammals. Genetics 153:919-932.
    • (2001) Genetics , vol.153 , pp. 919-932
    • Yokoyama, S.1    Radlwimmer, F.B.2
  • 38
    • 12944335314 scopus 로고    scopus 로고
    • Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change
    • Yokoyama, S., F. B. Radlwimmer, and N. S. Blow. 2000. Ultraviolet pigments in birds evolved from violet pigments by a single amino acid change. Proc. Natl. Acad. Sci. USA 97:7366-7371.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7366-7371
    • Yokoyama, S.1    Radlwimmer, F.B.2    Blow, N.S.3
  • 39
    • 0030484359 scopus 로고    scopus 로고
    • Adaptive evolution of photoreceptors and visual pigments in vertebrates
    • Yokoyama, S., and R. Yokoyama. 1996. Adaptive evolution of photoreceptors and visual pigments in vertebrates. Annu. Rev. Ecol. Syst. 27:534-567.
    • (1996) Annu. Rev. Ecol. Syst. , vol.27 , pp. 534-567
    • Yokoyama, S.1    Yokoyama, R.2
  • 40
    • 0033060070 scopus 로고    scopus 로고
    • Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae)
    • Yokoyama, S., H. Zhang, F. B. Radlwimmer, and N. S. Blow. 1999. Adaptive evolution of color vision of the Comoran coelacanth (Latimeria chalumnae). Proc. Natl. Acad. Sci. USA 96:6279-6284.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6279-6284
    • Yokoyama, S.1    Zhang, H.2    Radlwimmer, F.B.3    Blow, N.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.