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Volumn 537, Issue 7621, 2016, Pages 548-552

Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HISTONE H3; CHROMATIN; HISTONE; LYSINE;

EID: 84989158733     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature19360     Document Type: Article
Times cited : (450)

References (41)
  • 1
    • 84859910536 scopus 로고    scopus 로고
    • A unique regulatory phase of DNA methylation in the early mammalian embryo
    • Smith, Z. D. et al. A unique regulatory phase of DNA methylation in the early mammalian embryo. Nature 484, 339-344 (2012).
    • (2012) Nature , vol.484 , pp. 339-344
    • Smith, Z.D.1
  • 2
    • 84900300766 scopus 로고    scopus 로고
    • Programming and inheritance of parental DNA methylomes in mammals
    • Wang, L. et al. Programming and inheritance of parental DNA methylomes in mammals. Cell 157, 979-991 (2014).
    • (2014) Cell , vol.157 , pp. 979-991
    • Wang, L.1
  • 3
    • 84914818905 scopus 로고    scopus 로고
    • Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes
    • Shen, L. et al. Tet3 and DNA replication mediate demethylation of both the maternal and paternal genomes in mouse zygotes. Cell Stem Cell 15, 459-470 (2014).
    • (2014) Cell Stem Cell , vol.15 , pp. 459-470
    • Shen, L.1
  • 4
    • 84914817563 scopus 로고    scopus 로고
    • Active and passive demethylation of male and female pronuclear DNA in the mammalian zygote
    • Guo, F. et al. Active and passive demethylation of male and female pronuclear DNA in the mammalian zygote. Cell Stem Cell 15, 447-458 (2014).
    • (2014) Cell Stem Cell , vol.15 , pp. 447-458
    • Guo, F.1
  • 5
    • 84890723656 scopus 로고    scopus 로고
    • Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis
    • Park, S.-J. et al. Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis. Genes Dev. 27, 2736-2748 (2013).
    • (2013) Genes Dev. , vol.27 , pp. 2736-2748
    • Park, S.-J.1
  • 6
    • 84905052378 scopus 로고    scopus 로고
    • DNA methylation dynamics of the human preimplantation embryo
    • Smith, Z. D. et al. DNA methylation dynamics of the human preimplantation embryo. Nature 511, 611-615 (2014).
    • (2014) Nature , vol.511 , pp. 611-615
    • Smith, Z.D.1
  • 7
    • 84892179132 scopus 로고    scopus 로고
    • Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells
    • Deng, Q., Ramskold, D., Reinius, B. and Sandberg, R. Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells. Science 343, 193-196 (2014).
    • (2014) Science , vol.343 , pp. 193-196
    • Deng, Q.1    Ramskold, D.2    Reinius, B.3    Sandberg, R.4
  • 8
    • 84883134780 scopus 로고    scopus 로고
    • Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
    • Xue, Z. et al. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature 500, 593-597 (2013).
    • (2013) Nature , vol.500 , pp. 593-597
    • Xue, Z.1
  • 9
    • 84905030212 scopus 로고    scopus 로고
    • The DNA methylation landscape of human early embryos
    • Guo, H. et al. The DNA methylation landscape of human early embryos. Nature 511, 606-610 (2014).
    • (2014) Nature , vol.511 , pp. 606-610
    • Guo, H.1
  • 10
    • 84934791394 scopus 로고    scopus 로고
    • Paternal H3K4 methylation is required for minor zygotic gene activation and early mouse embryonic development
    • Aoshima, K., Inoue, E., Sawa, H. and Okada, Y. Paternal H3K4 methylation is required for minor zygotic gene activation and early mouse embryonic development. EMBO Rep. 16, 803-812 (2015).
    • (2015) EMBO Rep. , vol.16 , pp. 803-812
    • Aoshima, K.1    Inoue, E.2    Sawa, H.3    Okada, Y.4
  • 12
    • 14844286976 scopus 로고    scopus 로고
    • Dynamic chromatin modifications characterise the first cell cycle in mouse embryos
    • Santos, F., Peters, A. H., Otte, A. P., Reik, W. and Dean, W. Dynamic chromatin modifications characterise the first cell cycle in mouse embryos. Dev. Biol. 280, 225-236 (2005).
    • (2005) Dev. Biol. , vol.280 , pp. 225-236
    • Santos, F.1    Peters, A.H.2    Otte, A.P.3    Reik, W.4    Dean, W.5
  • 13
    • 0030693924 scopus 로고    scopus 로고
    • Differential H4 acetylation of paternal and maternal chromatin precedes DNA replication and differential transcriptional activity in pronuclei of 1-cell mouse embryos
    • Adenot, P. G., Mercier, Y., Renard, J. P. and Thompson, E. M. Differential H4 acetylation of paternal and maternal chromatin precedes DNA replication and differential transcriptional activity in pronuclei of 1-cell mouse embryos. Development 124, 4615-4625 (1997).
    • (1997) Development , vol.124 , pp. 4615-4625
    • Adenot, P.G.1    Mercier, Y.2    Renard, J.P.3    Thompson, E.M.4
  • 14
    • 84907419194 scopus 로고    scopus 로고
    • Immunogenetics, Chromatin state dynamics during blood formation
    • Lara-Astiaso, D. et al. Immunogenetics. Chromatin state dynamics during blood formation. Science 345, 943-949 (2014).
    • (2014) Science , vol.345 , pp. 943-949
    • Lara-Astiaso, D.1
  • 15
    • 84920181831 scopus 로고    scopus 로고
    • H3K4me3 epigenomic landscape derived from ChIP-seq of 1,000 mouse early embryonic cells
    • Shen, J. et al. H3K4me3 epigenomic landscape derived from ChIP-seq of 1,000 mouse early embryonic cells. Cell Res. 25, 143-147 (2015).
    • (2015) Cell Res. , vol.25 , pp. 143-147
    • Shen, J.1
  • 16
    • 58149380723 scopus 로고    scopus 로고
    • Genome-wide expression profiling reveals distinct clusters of transcriptional regulation during bovine preimplantation development in vivo
    • Kues, W. A. et al. Genome-wide expression profiling reveals distinct clusters of transcriptional regulation during bovine preimplantation development in vivo. Proc. Natl Acad. Sci. USA 105, 19768-19773 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 19768-19773
    • Kues, W.A.1
  • 17
    • 33846019277 scopus 로고    scopus 로고
    • Methylation of lysine 4 on histone H3: Intricacy of writing and reading a single epigenetic mark
    • Ruthenburg, A. J., Allis, C. D. and Wysocka, J. Methylation of lysine 4 on histone H3: intricacy of writing and reading a single epigenetic mark. Mol. Cell 25, 15-30 (2007).
    • (2007) Mol. Cell , vol.25 , pp. 15-30
    • Ruthenburg, A.J.1    Allis, C.D.2    Wysocka, J.3
  • 18
    • 79952534189 scopus 로고    scopus 로고
    • Regulation of chromatin by histone modifications
    • Bannister, A. J. and Kouzarides, T. Regulation of chromatin by histone modifications. Cell Res. 21, 381-395 (2011).
    • (2011) Cell Res. , vol.21 , pp. 381-395
    • Bannister, A.J.1    Kouzarides, T.2
  • 19
    • 84905405443 scopus 로고    scopus 로고
    • Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
    • Smallwood, S. A. et al. Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity. Nat. Methods 11, 817-820 (2014).
    • (2014) Nat. Methods , vol.11 , pp. 817-820
    • Smallwood, S.A.1
  • 20
    • 34547725157 scopus 로고    scopus 로고
    • DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA
    • Ooi, S. K. T. et al. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 448, 714-717 (2007).
    • (2007) Nature , vol.448 , pp. 714-717
    • Ooi, S.K.T.1
  • 21
    • 70449099301 scopus 로고    scopus 로고
    • Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain
    • Otani, J. et al. Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain. EMBO Rep. 10, 1235-1241 (2009).
    • (2009) EMBO Rep. , vol.10 , pp. 1235-1241
    • Otani, J.1
  • 22
    • 84876820776 scopus 로고    scopus 로고
    • Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases
    • Shirane, K. et al. Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases. PLoS Genet. 9, e1003439 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003439
    • Shirane, K.1
  • 23
    • 84880179559 scopus 로고    scopus 로고
    • Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa
    • Erkek, S. et al. Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa. Nat. Struct. Mol. Biol. 20, 868-875 (2013).
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 868-875
    • Erkek, S.1
  • 24
    • 78650758676 scopus 로고    scopus 로고
    • Histone H3K27ac separates active from poised enhancers and predicts developmental state
    • Creyghton, M. P. et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc. Natl Acad. Sci. USA 107, 21931-21936 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 21931-21936
    • Creyghton, M.P.1
  • 25
    • 84894598129 scopus 로고    scopus 로고
    • Rapid and pervasive changes in genome-wide enhancer usage during mammalian development
    • Nord, A. S. et al. Rapid and pervasive changes in genome-wide enhancer usage during mammalian development. Cell 155, 1521-1531 (2013).
    • (2013) Cell , vol.155 , pp. 1521-1531
    • Nord, A.S.1
  • 26
    • 84864462544 scopus 로고    scopus 로고
    • A map of the cis-regulatory sequences in the mouse genome
    • Shen, Y. et al. A map of the cis-regulatory sequences in the mouse genome. Nature 488, 116-120 (2012).
    • (2012) Nature , vol.488 , pp. 116-120
    • Shen, Y.1
  • 27
    • 60149091656 scopus 로고    scopus 로고
    • ChIP-seq accurately predicts tissue-specific activity of enhancers
    • Visel, A. et al. ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457, 854-858 (2009).
    • (2009) Nature , vol.457 , pp. 854-858
    • Visel, A.1
  • 28
    • 84929560607 scopus 로고    scopus 로고
    • MLL2 is required in oocytes for bulk histone 3 lysine 4 trimethylation and transcriptional silencing
    • Andreu-Vieyra, C. V. et al. MLL2 is required in oocytes for bulk histone 3 lysine 4 trimethylation and transcriptional silencing. PLoS Biol. 8, e1000453 (2010).
    • (2010) PLoS Biol. , vol.8 , pp. e1000453
    • Andreu-Vieyra, C.V.1
  • 29
    • 84923333199 scopus 로고    scopus 로고
    • Integrative analysis of haplotype-resolved epigenomes across human tissues
    • Leung, D. et al. Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature 518, 350-354 (2015).
    • (2015) Nature , vol.518 , pp. 350-354
    • Leung, D.1
  • 30
    • 84905392053 scopus 로고    scopus 로고
    • H3K4me3 breadth is linked to cell identity and transcriptional consistency
    • Benayoun, B. A. et al. H3K4me3 breadth is linked to cell identity and transcriptional consistency. Cell 158, 673-688 (2014).
    • (2014) Cell , vol.158 , pp. 673-688
    • Benayoun, B.A.1
  • 31
    • 84871854017 scopus 로고    scopus 로고
    • Counting chromosomes in intact eggs
    • Chiang, T. and Lampson, M. A. Counting chromosomes in intact eggs. Methods Mol. Biol. 957, 249-253 (2013).
    • (2013) Methods Mol. Biol. , vol.957 , pp. 249-253
    • Chiang, T.1    Lampson, M.A.2
  • 32
    • 44949138461 scopus 로고    scopus 로고
    • A rapid micro chromatin immunoprecipitation assay (microChIP)
    • Dahl, J. A. and Collas, P. A rapid micro chromatin immunoprecipitation assay (microChIP). Nat. Protocols 3, 1032-1045 (2008).
    • (2008) Nat. Protocols , vol.3 , pp. 1032-1045
    • Dahl, J.A.1    Collas, P.2
  • 33
    • 84922032314 scopus 로고    scopus 로고
    • Micro chromatin immunoprecipitation ( ChIP) from early mammalian embryos
    • Dahl, J. A. and Klungland, A. Micro chromatin immunoprecipitation ( ChIP) from early mammalian embryos. Methods Mol. Biol. 1222, 227-245 (2015).
    • (2015) Methods Mol. Biol. , vol.1222 , pp. 227-245
    • Dahl, J.A.1    Klungland, A.2
  • 34
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows- Wheeler transform
    • Li, H. and Durbin, R. Fast and accurate short read alignment with Burrows- Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 35
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger, A. M., Lohse, M. and Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 36
    • 79957868920 scopus 로고    scopus 로고
    • Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications
    • Krueger, F. and Andrews, S. R. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics 27, 1571-1572 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 1571-1572
    • Krueger, F.1    Andrews, S.R.2
  • 37
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 38
    • 84959215521 scopus 로고    scopus 로고
    • An interactive environment for agile analysis and visualization of ChIP-sequencing data
    • Lerdrup, M., Johansen, J. V., Agrawal-Singh, S. and Hansen, K. An interactive environment for agile analysis and visualization of ChIP-sequencing data. Nat. Struct. Mol. Biol. 23, 349-357 (2016).
    • (2016) Nat. Struct. Mol. Biol. , vol.23 , pp. 349-357
    • Lerdrup, M.1    Johansen, J.V.2    Agrawal-Singh, S.3    Hansen, K.4
  • 39
    • 77952214662 scopus 로고    scopus 로고
    • GREAT improves functional interpretation of cis-regulatory regions
    • McLean, C. Y. et al. GREAT improves functional interpretation of cis-regulatory regions. Nat. Biotechnol. 28, 495-501 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 495-501
    • McLean, C.Y.1
  • 40
    • 33847172748 scopus 로고    scopus 로고
    • Statistical significance of cis-regulatory modules
    • Schones, D. E., Smith, A. D. and Zhang, M. Q. Statistical significance of cis-regulatory modules. BMC Bioinformatics 8, http://dx.doi.org/10.1186/1471-2105-8-19 (2007).
    • (2007) BMC Bioinformatics , vol.8
    • Schones, D.E.1    Smith, A.D.2    Zhang, M.Q.3
  • 41
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
    • Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell 38, 576-589 (2010).
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1


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