-
1
-
-
84859910536
-
A unique regulatory phase of DNA methylation in the early mammalian embryo
-
Smith, Z.D. et al. A unique regulatory phase of DNA methylation in the early mammalian embryo. Nature 484, 339-344 (2012).
-
(2012)
Nature
, vol.484
, pp. 339-344
-
-
Smith, Z.D.1
-
2
-
-
80053348585
-
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
-
Gu, T.P. et al. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature 477, 606-610 (2011).
-
(2011)
Nature
, vol.477
, pp. 606-610
-
-
Gu, T.P.1
-
3
-
-
0031568328
-
Regulation of transcriptional activity during the first and second cell cycles in the preimplantation mouse embryo
-
Aoki, F., Worrad, D.M. & Schultz, R.M. Regulation of transcriptional activity during the first and second cell cycles in the preimplantation mouse embryo. Dev. Biol. 181, 296-307 (1997).
-
(1997)
Dev. Biol
, vol.181
, pp. 296-307
-
-
Aoki, F.1
Worrad, D.M.2
Schultz, R.M.3
-
4
-
-
40849129243
-
PRC1 and Suv39h specify parental asymmetry at constitutive heterochromatin in early mouse embryos
-
Puschendorf, M. et al. PRC1 and Suv39h specify parental asymmetry at constitutive heterochromatin in early mouse embryos. Nat. Genet. 40, 411-420 (2008).
-
(2008)
Nat. Genet
, vol.40
, pp. 411-420
-
-
Puschendorf, M.1
-
5
-
-
84862551364
-
PGC7 binds histone H3K9me2 to protect against conversion of 5mC to 5hmC in early embryos
-
Nakamura, T. et al. PGC7 binds histone H3K9me2 to protect against conversion of 5mC to 5hmC in early embryos. Nature 486, 415-419 (2012).
-
(2012)
Nature
, vol.486
, pp. 415-419
-
-
Nakamura, T.1
-
6
-
-
84857467013
-
Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
-
Kobayashi, H. et al. Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks. PLoS Genet. 8, e1002440 (2012).
-
(2012)
PLoS Genet
, vol.8
-
-
Kobayashi, H.1
-
7
-
-
29144504429
-
Epigenetic abnormalities of the mouse paternal zygotic genome associated with microinsemination of round spermatids
-
Kishigami, S. et al. Epigenetic abnormalities of the mouse paternal zygotic genome associated with microinsemination of round spermatids. Dev. Biol. 289, 195-205 (2006).
-
(2006)
Dev. Biol
, vol.289
, pp. 195-205
-
-
Kishigami, S.1
-
8
-
-
78650727646
-
Essential role of paternal chromatin in the regulation of transcriptional activity during mouse preimplantation development
-
Bui, H.T. et al. Essential role of paternal chromatin in the regulation of transcriptional activity during mouse preimplantation development. Reproduction 141, 67-77 (2011).
-
(2011)
Reproduction
, vol.141
, pp. 67-77
-
-
Bui, H.T.1
-
9
-
-
43249119834
-
Sperm-derived histones contribute to zygotic chromatin in humans
-
van der Heijden, G.W. et al. Sperm-derived histones contribute to zygotic chromatin in humans. BMC Dev. Biol. 8, 34 (2008).
-
(2008)
BMC Dev. Biol
, vol.8
, pp. 34
-
-
Van Der Heijden, G.W.1
-
10
-
-
67749114140
-
Distinctive chromatin in human sperm packages genes for embryo development
-
Hammoud, S.S. et al. Distinctive chromatin in human sperm packages genes for embryo development. Nature 460, 473-478 (2009).
-
(2009)
Nature
, vol.460
, pp. 473-478
-
-
Hammoud, S.S.1
-
11
-
-
77953292127
-
Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa
-
Brykczynska, U. et al. Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa. Nat. Struct. Mol. Biol. 17, 679-687 (2010).
-
(2010)
Nat. Struct. Mol. Biol
, vol.17
, pp. 679-687
-
-
Brykczynska, U.1
-
12
-
-
0034598784
-
Demethylation of the zygotic paternal genome
-
Mayer, W., Niveleau, A., Walter, J., Fundele, R. & Haaf, T. Demethylation of the zygotic paternal genome. Nature 403, 501-502 (2000).
-
(2000)
Nature
, vol.403
, pp. 501-502
-
-
Mayer, W.1
Niveleau, A.2
Walter, J.3
Fundele, R.4
Haaf, T.5
-
13
-
-
84861977733
-
Parental epigenetic control of embryogenesis: A balance between inheritance and reprogramming
-
Gill, M.E., Erkek, S. & Peters, A.H. Parental epigenetic control of embryogenesis: a balance between inheritance and reprogramming Curr. Opin. Cell Biol. 24, 387-396 (2012).
-
(2012)
Curr. Opin. Cell Biol
, vol.24
, pp. 387-396
-
-
Gill, M.E.1
Erkek, S.2
Peters, A.H.3
-
14
-
-
55949137722
-
Persistent epigenetic differences associated with prenatal exposure to famine in humans
-
Heijmans, B.T. et al. Persistent epigenetic differences associated with prenatal exposure to famine in humans. Proc. Natl. Acad. Sci. USA 105, 17046-17049 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 17046-17049
-
-
Heijmans, B.T.1
-
15
-
-
76749151467
-
Maternal ethanol consumption alters the epigenotype and the phenotype of offspring in a mouse model
-
Kaminen-Ahola, N. et al. Maternal ethanol consumption alters the epigenotype and the phenotype of offspring in a mouse model. PLoS Genet. 6, e1000811 (2010).
-
(2010)
PLoS Genet
, vol.6
-
-
Kaminen-Ahola, N.1
-
16
-
-
33750607327
-
Transgenerational effect of the endocrine disruptor vinclozolin on male spermatogenesis
-
Anway, M.D., Memon, M.A., Uzumcu, M. & Skinner, M.K. Transgenerational effect of the endocrine disruptor vinclozolin on male spermatogenesis. J. Androl. 27, 868-879 (2006).
-
(2006)
J. Androl
, vol.27
, pp. 868-879
-
-
Anway, M.D.1
Memon, M.A.2
Uzumcu, M.3
Skinner, M.K.4
-
17
-
-
78650446334
-
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals
-
Carone, B.R. et al. Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals. Cell 143, 1084-1096 (2010).
-
(2010)
Cell
, vol.143
, pp. 1084-1096
-
-
Carone, B.R.1
-
18
-
-
84868646303
-
Multigenerational epigenetic adaptation of the hepatic wound-healing response
-
Zeybel, M. et al. Multigenerational epigenetic adaptation of the hepatic wound-healing response. Nat. Med. 18, 1369-1377 (2012).
-
(2012)
Nat. Med
, vol.18
, pp. 1369-1377
-
-
Zeybel, M.1
-
19
-
-
0017747509
-
Mouse sperm chromatin proteins: Quantitative isolation and partial characterization
-
Balhorn, R., Gledhill, B.L. & Wyrobek, A.J. Mouse sperm chromatin proteins: quantitative isolation and partial characterization. Biochemistry 16, 4074-4080 (1977).
-
(1977)
Biochemistry
, vol.16
, pp. 4074-4080
-
-
Balhorn, R.1
Gledhill, B.L.2
Wyrobek, A.J.3
-
20
-
-
0023262062
-
Sequence-specific packaging of DNA in human sperm chromatin
-
Gatewood, J.M., Cook, G.R., Balhorn, R., Bradbury, E.M. & Schmid, C.W. Sequence-specific packaging of DNA in human sperm chromatin. Science 236, 962-964 (1987).
-
(1987)
Science
, vol.236
, pp. 962-964
-
-
Gatewood, J.M.1
Cook, G.R.2
Balhorn, R.3
Bradbury, E.M.4
Schmid, C.W.5
-
21
-
-
0031843173
-
Histone-and protamine-DNA association: Conservation of different patterns within the -globin domain in human sperm
-
Gardiner-Garden, M., Ballesteros, M., Gordon, M. & Tam, P.P. Histone-and protamine-DNA association: conservation of different patterns within the -globin domain in human sperm. Mol. Cell Biol. 18, 3350-3356 (1998).
-
(1998)
Mol. Cell Biol
, vol.18
, pp. 3350-3356
-
-
Gardiner-Garden, M.1
Ballesteros, M.2
Gordon, M.3
Tam, P.P.4
-
22
-
-
0042031173
-
The structural organization of sperm chromatin
-
Wykes, S.M. & Krawetz, S.A. The structural organization of sperm chromatin. J. Biol. Chem. 278, 29471-29477 (2003).
-
(2003)
J. Biol. Chem
, vol.278
, pp. 29471-29477
-
-
Wykes, S.M.1
Krawetz, S.A.2
-
23
-
-
0032746646
-
A fraction of mouse sperm chromatin is organized in nucleosomal hypersensitive domains enriched in retroposon DNA
-
Pittoggi, C. et al. A fraction of mouse sperm chromatin is organized in nucleosomal hypersensitive domains enriched in retroposon DNA. J. Cell Sci. 112, 3537-3548 (1999).
-
(1999)
J. Cell Sci
, vol.112
, pp. 3537-3548
-
-
Pittoggi, C.1
-
24
-
-
68149176814
-
Endonuclease-sensitive regions of human spermatozoal chromatin are highly enriched in promoter and CTCF binding sequences
-
Arpanahi, A. et al. Endonuclease-sensitive regions of human spermatozoal chromatin are highly enriched in promoter and CTCF binding sequences. Genome Res. 19, 1338-1349 (2009).
-
(2009)
Genome Res
, vol.19
, pp. 1338-1349
-
-
Arpanahi, A.1
-
25
-
-
51649129596
-
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
-
Mohn, F. et al. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mol. Cell 30, 755-766 (2008).
-
(2008)
Mol. Cell
, vol.30
, pp. 755-766
-
-
Mohn, F.1
-
26
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan, N. et al. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458, 362-366 (2009).
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
-
27
-
-
75149135277
-
+C content dominates intrinsic nucleosome occupancy
-
Tillo, D. & Hughes, T.R.G. +C content dominates intrinsic nucleosome occupancy. BMC Bioinformatics 10, 442 (2009).
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 442
-
-
Tillo, D.1
Hughes, T.R.G.2
-
28
-
-
79956330964
-
CpG islands and the regulation of transcription
-
Deaton, A.M. & Bird, A. CpG islands and the regulation of transcription. Genes Dev. 25, 1010-1022 (2011).
-
(2011)
Genes Dev
, vol.25
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
29
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones, D.E. et al. Dynamic regulation of nucleosome positioning in the human genome. Cell 132, 887-898 (2008).
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
-
30
-
-
67649669255
-
A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling
-
Ramirez-Carrozzi, V.R. et al. A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling. Cell 138, 114-128 (2009).
-
(2009)
Cell
, vol.138
, pp. 114-128
-
-
Ramirez-Carrozzi, V.R.1
-
31
-
-
84870485829
-
CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
-
Fenouil, R. et al. CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters. Genome Res. 22, 2399-2408 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 2399-2408
-
-
Fenouil, R.1
-
32
-
-
79958777000
-
The nucleosome map of the mammalian liver
-
Li, Z., Schug, J., Tuteja, G., White, P. & Kaestner, K.H. The nucleosome map of the mammalian liver. Nat. Struct. Mol. Biol. 18, 742-746 (2011).
-
(2011)
Nat. Struct. Mol. Biol
, vol.18
, pp. 742-746
-
-
Li, Z.1
Schug, J.2
Tuteja, G.3
White, P.4
Kaestner, K.H.5
-
33
-
-
84870552401
-
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
-
Kelly, T.K. et al. Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules. Genome Res. 22, 2497-2506 (2012).
-
(2012)
Genome Res
, vol.22
, pp. 2497-2506
-
-
Kelly, T.K.1
-
34
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler, M.B. et al. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480, 490-495 (2011).
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
-
35
-
-
72849140654
-
Chromatin mechanisms in genomic imprinting
-
Kacem, S. & Feil, R. Chromatin mechanisms in genomic imprinting. Mamm. Genome 20 544-556 (2009).
-
(2009)
Mamm. Genome
, vol.20
, pp. 544-556
-
-
Kacem, S.1
Feil, R.2
-
36
-
-
84655164284
-
De novo DNA methylation: A germ cell perspective
-
Smallwood, S.A. & Kelsey, G. De novo DNA methylation: a germ cell perspective. Trends Genet. 28, 33-42 (2012).
-
(2012)
Trends Genet
, vol.28
, pp. 33-42
-
-
Smallwood, S.A.1
Kelsey, G.2
-
37
-
-
79955610452
-
Chromatin organization in sperm may be the major functional consequence of base composition variation in the human genome
-
Vavouri, T. & Lehner, B. Chromatin organization in sperm may be the major functional consequence of base composition variation in the human genome. PLoS Genet. 7, e1002036 (2011).
-
(2011)
PLoS Genet
, vol.7
-
-
Vavouri, T.1
Lehner, B.2
-
38
-
-
80052937538
-
Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates
-
Molaro, A. et al. Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell 146, 1029-1041 (2011).
-
(2011)
Cell
, vol.146
, pp. 1029-1041
-
-
Molaro, A.1
-
39
-
-
77952241644
-
New functions for an old variant: No substitute for histone H3.3
-
Elsaesser, S.J., Goldberg, A.D. & Allis, C.D. New functions for an old variant: no substitute for histone H3.3. Curr. Opin. Genet. Dev. 20, 110-117 (2010).
-
(2010)
Curr. Opin. Genet. Dev
, vol.20
, pp. 110-117
-
-
Elsaesser, S.J.1
Goldberg, A.D.2
Allis, C.D.3
-
40
-
-
70349333702
-
Epigenetic and replacement roles of histone variant H3.3 in reproduction and development
-
Orsi, G.A., Couble, P. & Loppin, B. Epigenetic and replacement roles of histone variant H3.3 in reproduction and development. Int. J. Dev. Biol. 53, 231-243 (2009).
-
(2009)
Int. J. Dev. Biol
, vol.53
, pp. 231-243
-
-
Orsi, G.A.1
Couble, P.2
Loppin, B.3
-
41
-
-
79952536146
-
The double face of the histone variant H3.3
-
Szenker, E., Ray-Gallet, D. & Almouzni, G. The double face of the histone variant H3.3. Cell Res. 21, 421-434 (2011).
-
(2011)
Cell Res
, vol.21
, pp. 421-434
-
-
Szenker, E.1
Ray-Gallet, D.2
Almouzni, G.3
-
42
-
-
33846590537
-
Chromosome-wide nucleosome replacement and H3.3 incorporation during mammalian meiotic sex chromosome inactivation
-
van der Heijden, G.W. et al. Chromosome-wide nucleosome replacement and H3.3 incorporation during mammalian meiotic sex chromosome inactivation. Nat. Genet. 39, 251-258 (2007).
-
(2007)
Nat. Genet
, vol.39
, pp. 251-258
-
-
Van Der Heijden, G.W.1
-
43
-
-
0023404906
-
Changes in histones H2A and H3 variant composition in differentiating and mature rat brain cortical neurons
-
Pia, B. & Suau, P. Changes in histones H2A and H3 variant composition in differentiating and mature rat brain cortical neurons. Dev. Biol. 123, 51-58 (1987).
-
(1987)
Dev. Biol
, vol.123
, pp. 51-58
-
-
Pia, B.1
Suau, P.2
-
44
-
-
77649099092
-
Distinct factors control histone variant H3.3 localization at specific genomic regions
-
Goldberg, A.D. et al. Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell 140, 678-691 (2010).
-
(2010)
Cell
, vol.140
, pp. 678-691
-
-
Goldberg, A.D.1
-
45
-
-
20444432353
-
RNA transcript profiling during zygotic gene activation in the preimplantation mouse embryo
-
Zeng, F. & Schultz, R.M. RNA transcript profiling during zygotic gene activation in the preimplantation mouse embryo. Dev. Biol. 283, 40-57 (2005).
-
(2005)
Dev. Biol
, vol.283
, pp. 40-57
-
-
Zeng, F.1
Schultz, R.M.2
-
46
-
-
33846972618
-
Differential histone modifications mark mouse imprinting control regions during spermatogenesis
-
Delaval, K. et al. Differential histone modifications mark mouse imprinting control regions during spermatogenesis. EMBO J. 26, 720-729 (2007).
-
(2007)
EMBO J
, vol.26
, pp. 720-729
-
-
Delaval, K.1
-
47
-
-
84860504565
-
Polycomb function during oogenesis is required for mouse embryonic development
-
Posfai, E. et al. Polycomb function during oogenesis is required for mouse embryonic development. Genes Dev. 26, 920-932 (2012).
-
(2012)
Genes Dev
, vol.26
, pp. 920-932
-
-
Posfai, E.1
-
48
-
-
33750329496
-
CpGcluster: A distance-based algorithm for CpG-island detection
-
Hackenberg, M. et al. CpGcluster: a distance-based algorithm for CpG-island detection. BMC Bioinformatics 7, 446 (2006).
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 446
-
-
Hackenberg, M.1
-
49
-
-
23144456323
-
Asymmetry in histone H3 variants and lysine methylation between paternal and maternal chromatin of the early mouse zygote
-
van der Heijden, G.W. et al. Asymmetry in histone H3 variants and lysine methylation between paternal and maternal chromatin of the early mouse zygote. Mech. Dev. 122, 1008-1022 (2005).
-
(2005)
Mech. Dev
, vol.122
, pp. 1008-1022
-
-
Van Der Heijden, G.W.1
-
50
-
-
70350453978
-
Isolation and analyses of enriched populations of male mouse germ cells by sedimentation velocity: The centrifugal elutriation
-
Barchi, M., Geremia, R., Magliozzi, R. & Bianchi, E. Isolation and analyses of enriched populations of male mouse germ cells by sedimentation velocity: the centrifugal elutriation. Methods Mol. Biol. 558, 299-321 (2009).
-
(2009)
Methods Mol. Biol
, vol.558
, pp. 299-321
-
-
Barchi, M.1
Geremia, R.2
Magliozzi, R.3
Bianchi, E.4
-
51
-
-
0033756308
-
Chromatin association of human origin recognition complex, cdc6, and minichromosome maintenance proteins during the cell cycle: Assembly of prereplication complexes in late mitosis
-
Mndez, J. & Stillman, B. Chromatin association of human origin recognition complex, cdc6, and minichromosome maintenance proteins during the cell cycle: assembly of prereplication complexes in late mitosis. Mol. Cell Biol. 20, 8602-8612 (2000).
-
(2000)
Mol. Cell Biol
, vol.20
, pp. 8602-8612
-
-
Mndez, J.1
Stillman, B.2
-
52
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J. et al. The human genome browser at UCSC. Genome Res. 12, 996-1006 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
53
-
-
33745626459
-
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
-
Alexa, A., Rahnenfuhrer, J. & Lengauer, T. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics 22, 1600-1607 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 1600-1607
-
-
Alexa, A.1
Rahnenfuhrer, J.2
Lengauer, T.3
|