-
1
-
-
33645807371
-
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA
-
Blainey PC, van Oijen AM, Banerjee A, Verdine GL, Xie XS. 2006. A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA. Proceedings of the National Academy of Sciences of the United States of America 103:5752-5757. doi. 10.1073/pnas.0509723103
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, pp. 5752-5757
-
-
Blainey, P.C.1
Van Oijen, A.M.2
Banerjee, A.3
Verdine, G.L.4
Xie, X.S.5
-
2
-
-
77953583256
-
Interferon-inducible p200-family proteins as novel sensors of cytoplasmic DNA: Role in inflammation and autoimmunity
-
Choubey D, Duan X, Dickerson E, Ponomareva L, Panchanathan R, Shen H, Srivastava R. 2010. Interferon-inducible p200-family proteins as novel sensors of cytoplasmic DNA: role in inflammation and autoimmunity. Journal of Interferon & Cytokine Research 30:371-380. doi: 10.1089/jir.2009.0096
-
(2010)
Journal of Interferon & Cytokine Research
, vol.30
, pp. 371-380
-
-
Choubey, D.1
Duan, X.2
Dickerson, E.3
Ponomareva, L.4
Panchanathan, R.5
Shen, H.6
Srivastava, R.7
-
3
-
-
84877757789
-
Nuclear DNA sensor IFI16 as circulating protein in autoimmune diseases is a signal of damage that impairs endothelial cells through high-affinity membrane binding
-
Gugliesi F, Bawadekar M, De Andrea M, Dell’Oste V, Caneparo V, Tincani A, Gariglio M, Landolfo S, Bachmann MP. 2013. Nuclear DNA sensor IFI16 as circulating protein in autoimmune diseases is a signal of damage that impairs endothelial cells through high-affinity membrane binding. PLoS One 8:e63045. doi: 10.1371/journal.pone.0063045
-
(2013)
Plos One
, vol.8
-
-
Gugliesi, F.1
Bawadekar, M.2
De Andrea, M.3
Dell’Oste, V.4
Caneparo, V.5
Tincani, A.6
Gariglio, M.7
Landolfo, S.8
Bachmann, M.P.9
-
4
-
-
33645816459
-
How proteins search for their specific sites on DNA: The role of DNA conformation
-
Hu T, Grosberg AY, Shklovskii BI. 2006. How proteins search for their specific sites on DNA: the role of DNA conformation. Biophysical Journal 90:2731-2744. doi: 10.1529/biophysj.105.078162
-
(2006)
Biophysical Journal
, vol.90
, pp. 2731-2744
-
-
Hu, T.1
Grosberg, A.Y.2
Shklovskii, B.I.3
-
6
-
-
84912108081
-
IFI16 restricts HSV-1 replication by accumulating on the HSV-1 genome, repressing HSV-1 gene expression, and directly or indirectly modulating histone modifications
-
PPATHOGENS-D-14-01180 [pii]
-
Johnson KE, Bottero V, Flaherty S, Dutta S, Singh VV, Chandran B, Everett RD. 2014. IFI16 restricts HSV-1 replication by accumulating on the HSV-1 genome, repressing HSV-1 gene expression, and directly or indirectly modulating histone modifications. PLoS Pathogens 10:e1004503. PPATHOGENS-D-14-01180 [pii]. doi: 10.1371/journal.ppat.1004503
-
(2014)
Plos Pathogens
, vol.10
-
-
Johnson, K.E.1
Bottero, V.2
Flaherty, S.3
Dutta, S.4
Singh, V.V.5
Chandran, B.6
Everett, R.D.7
-
7
-
-
84876334378
-
Herpes simplex virus 1 infection induces activation and subsequent inhibition of the IFI16 and NLRP3 inflammasomes
-
Johnson KE, Chikoti L, Chandran B. 2013. Herpes simplex virus 1 infection induces activation and subsequent inhibition of the IFI16 and NLRP3 inflammasomes. Journal of Virology 87:5005-5018. doi: 10.1128/JVI.00082-13
-
(2013)
Journal of Virology
, vol.87
, pp. 5005-5018
-
-
Johnson, K.E.1
Chikoti, L.2
Chandran, B.3
-
8
-
-
79956061094
-
IFI16 acts as a nuclear pathogen sensor to induce the inflammasome in response to kaposi sarcoma-associated herpesvirus infection
-
Kerur N, Veettil MV, Sharma-Walia N, Bottero V, Sadagopan S, Otageri P, Chandran B. 2011. IFI16 acts as a nuclear pathogen sensor to induce the inflammasome in response to kaposi sarcoma-associated herpesvirus infection. Cell Host & Microbe 9:363-375. doi: 10.1016/j.chom.2011.04.008
-
(2011)
Cell Host & Microbe
, vol.9
, pp. 363-375
-
-
Kerur, N.1
Veettil, M.V.2
Sharma-Walia, N.3
Bottero, V.4
Sadagopan, S.5
Otageri, P.6
Chandran, B.7
-
9
-
-
84867351024
-
Sequence-dependent sliding kinetics of p53
-
Leith JS, Tafvizi A, Huang F, Uspal WE, Doyle PS, Fersht AR, Mirny LA, van Oijen AM. 2012. Sequence-dependent sliding kinetics of p53. Proceedings of the National Academy of Sciences of the United States of America 109:16552-16557. doi: 10.1073/pnas.1120452109
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, pp. 16552-16557
-
-
Leith, J.S.1
Tafvizi, A.2
Huang, F.3
Uspal, W.E.4
Doyle, P.S.5
Fersht, A.R.6
Mirny, L.A.7
Van Oijen, A.M.8
-
10
-
-
84887929864
-
Human cytomegalovirus tegument protein pUL83 inhibits IFI16-mediated DNA sensing for immune evasion
-
Li T, Chen J, Cristea IM. 2013. Human cytomegalovirus tegument protein pUL83 inhibits IFI16-mediated DNA sensing for immune evasion. Cell Host & Microbe 14:591-599. doi: 10.1016/j.chom.2013.10.007
-
(2013)
Cell Host & Microbe
, vol.14
, pp. 591-599
-
-
Li, T.1
Chen, J.2
Cristea, I.M.3
-
12
-
-
0033289822
-
Expression and purification of recombinant histones and nucleosome reconstitution
-
1-59259-681-9-1 [pii]
-
Luger K, Rechsteiner TJ, Richmond TJ. 1999. Expression and purification of recombinant histones and nucleosome reconstitution. Methods in Molecular Biology 119:1-16. 1-59259-681-9-1 [pii]. doi: 10.1385/1-59259-681-9:1
-
(1999)
Methods in Molecular Biology
, vol.119
, pp. 1-16
-
-
Luger, K.1
Rechsteiner, T.J.2
Richmond, T.J.3
-
13
-
-
0020645755
-
Higher order structure of chromatin: Orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length
-
McGhee JD, Nickol JM, Felsenfeld G, Rau DC. 1983. Higher order structure of chromatin: orientation of nucleosomes within the 30 nm chromatin solenoid is independent of species and spacer length. Cell 33:831-841. doi: 10.1016/0092-8674(83)90025-9
-
(1983)
Cell
, vol.33
, pp. 831-841
-
-
McGhee, J.D.1
Nickol, J.M.2
Felsenfeld, G.3
Rau, D.C.4
-
14
-
-
0037066502
-
Decoding the patterns of self and nonself by the innate immune system
-
296/5566/298 [pii]
-
Medzhitov R, Janeway CA. 2002. Decoding the patterns of self and nonself by the innate immune system. Science 296:298-300. 296/5566/298 [pii]. doi: 10.1126/science.1068883
-
(2002)
Science
, vol.296
, pp. 298-300
-
-
Medzhitov, R.1
Janeway, C.A.2
-
15
-
-
0033975869
-
Innate immune recognition: Mechanisms and pathways
-
Medzhitov R, Janeway CJ. 2000. Innate immune recognition: mechanisms and pathways. Immunological Reviews 173:89-97. doi: 10.1034/j.1600-065X.2000.917309.x
-
(2000)
Immunological Reviews
, vol.173
, pp. 89-97
-
-
Medzhitov, R.1
Janeway, C.J.2
-
16
-
-
77951485147
-
The interferon-inducible HIN-200 gene family in apoptosis and inflammation: Implication for autoimmunity
-
Mondini M, Costa S, Sponza S, Gugliesi F, Gariglio M, Landolfo S. 2010. The interferon-inducible HIN-200 gene family in apoptosis and inflammation: implication for autoimmunity. Autoimmunity 43:226-231. doi: 10.3109/08916930903510922
-
(2010)
Autoimmunity
, vol.43
, pp. 226-231
-
-
Mondini, M.1
Costa, S.2
Sponza, S.3
Gugliesi, F.4
Gariglio, M.5
Landolfo, S.6
-
17
-
-
35748950430
-
Role of the interferon-inducible gene IFI16 in the etiopathogenesis of systemic autoimmune disorders
-
Mondini M, Vidali M, Airo P, De Andrea M, Riboldi P, Meroni PL, Gariglio M, Landolfo S. 2007. Role of the interferon-inducible gene IFI16 in the etiopathogenesis of systemic autoimmune disorders. Annals of the New York Academy of Sciences 1110:47-56. doi: 10.1196/annals.1423.006
-
(2007)
Annals of the New York Academy of Sciences
, vol.1110
, pp. 47-56
-
-
Mondini, M.1
Vidali, M.2
Airo, P.3
De Andrea, M.4
Riboldi, P.5
Meroni, P.L.6
Gariglio, M.7
Landolfo, S.8
-
18
-
-
84892946076
-
IFI16 DNA sensor is required for death of lymphoid CD4 t cells abortively infected with HIV
-
science.1243640 [pii]
-
Monroe KM, Yang Z, Johnson JR, Geng X, Doitsh G, Krogan NJ, Greene WC. 2014. IFI16 DNA sensor is required for death of lymphoid CD4 t cells abortively infected with HIV. Science 343:428-432. science.1243640 [pii]. doi: 10.1126/science.1243640
-
(2014)
Science
, vol.343
, pp. 428-432
-
-
Monroe, K.M.1
Yang, Z.2
Johnson, J.R.3
Geng, X.4
Doitsh, G.5
Krogan, N.J.6
Greene, W.C.7
-
19
-
-
84891933102
-
Cooperative assembly of IFI16 filaments on dsDNA provides insights into host defense strategy
-
Morrone SR, Wang T, Constantoulakis LM, Hooy RM, Delannoy MJ, Sohn J. 2014. Cooperative assembly of IFI16 filaments on dsDNA provides insights into host defense strategy. Proceedings of the National Academy of Sciences of the United States of America 111:E62-E71. doi: 10.1073/pnas.1313577111
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, pp. E62-E71
-
-
Morrone, S.R.1
Wang, T.2
Constantoulakis, L.M.3
Hooy, R.M.4
Delannoy, M.J.5
Sohn, J.6
-
20
-
-
84891933102
-
Cooperative assembly of IFI16 filaments on dsDNA provides insights into host defense strategy
-
Morrone SR, Wang T, Constantoulakis LM, Hooy RM, Delannoy MJ, Sohn J. 2014. Cooperative assembly of IFI16 filaments on dsDNA provides insights into host defense strategy. Proceedings of the National Academy of Sciences of the United States of America 111:E62-E71. doi: 10.1073/pnas.1313577111
-
(2014)
Proceedings of the National Academy of Sciences of the United States of America
, vol.111
, pp. E62-E71
-
-
Morrone, S.R.1
Wang, T.2
Constantoulakis, L.M.3
Hooy, R.M.4
Delannoy, M.J.5
Sohn, J.6
-
21
-
-
84888122810
-
Nuclear interferon-inducible protein 16 promotes silencing of herpesviral and transfected DNA
-
Orzalli MH, Conwell SE, Berrios C, DeCaprio JA, Knipe DM. 2013. Nuclear interferon-inducible protein 16 promotes silencing of herpesviral and transfected DNA. Proceedings of the National Academy of Sciences of the United States of America 110:E4492-E4501. doi: 10.1073/pnas.1316194110
-
(2013)
Proceedings of the National Academy of Sciences of the United States of America
, vol.110
, pp. E4492-E4501
-
-
Orzalli, M.H.1
Conwell, S.E.2
Berrios, C.3
Decaprio, J.A.4
Knipe, D.M.5
-
23
-
-
84907515304
-
Cellular sensing of viral DNA and viral evasion mechanisms
-
Orzalli MH, Knipe DM. 2014. Cellular sensing of viral DNA and viral evasion mechanisms. Annual Review of Microbiology 68:477-492. doi: 10.1146/annurev-micro-091313-103409
-
(2014)
Annual Review of Microbiology
, vol.68
, pp. 477-492
-
-
Orzalli, M.H.1
Knipe, D.M.2
-
24
-
-
84878190840
-
Immune sensing of DNA
-
Paludan SR, Bowie AG. 2013. Immune sensing of DNA. Immunity 38:870-880. doi: 10.1016/j.immuni.2013.05.004
-
(2013)
Immunity
, vol.38
, pp. 870-880
-
-
Paludan, S.R.1
Bowie, A.G.2
-
25
-
-
84918531249
-
Role of DNA/RNA sensors and contribution to autoimmunity
-
S1359-6101(14)00081-1 [pii]
-
Smith S, Jefferies C. 2014. Role of DNA/RNA sensors and contribution to autoimmunity. Cytokine & Growth Factor Reviews 25:745-757. S1359-6101(14)00081-1 [pii]. doi: 10.1016/j.cytogfr.2014.07.019
-
(2014)
Cytokine & Growth Factor Reviews
, vol.25
, pp. 745-757
-
-
Smith, S.1
Jefferies, C.2
-
26
-
-
79952259642
-
A single-molecule characterization of p53 search on DNA
-
Tafvizi A, Huang F, Fersht AR, Mirny LA, van Oijen AM. 2011. A single-molecule characterization of p53 search on DNA. Proceedings of the National Academy of Sciences of the United States of America 108:563-568. doi: 10.1073/pnas.1016020107
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, pp. 563-568
-
-
Tafvizi, A.1
Huang, F.2
Fersht, A.R.3
Mirny, L.A.4
Van Oijen, A.M.5
-
27
-
-
46749108829
-
Tumor suppressor p53 slides on DNA with low friction and high stability
-
Tafvizi A, Huang F, Leith JS, Fersht AR, Mirny LA, van Oijen AM. 2008. Tumor suppressor p53 slides on DNA with low friction and high stability. Biophysical Journal 95:L01-L03. doi: 10.1529/biophysj.108.134122
-
(2008)
Biophysical Journal
, vol.95
, pp. L01-L03
-
-
Tafvizi, A.1
Huang, F.2
Leith, J.S.3
Fersht, A.R.4
Mirny, L.A.5
Van Oijen, A.M.6
-
28
-
-
77954575187
-
Visualizing DNA replication at the single-molecule level
-
S0076-6879(10)75011-4 [pii]
-
Tanner NA, van Oijen AM. 2010. Visualizing DNA replication at the single-molecule level. Methods Enzymol 475: 259-278. S0076-6879(10)75011-4 [pii]. doi: 10.1016/S0076-6879(10)75011-4
-
(2010)
Methods Enzymol
, vol.475
, pp. 259-278
-
-
Tanner, N.A.1
Van Oijen, A.M.2
-
29
-
-
84947207418
-
Theory of bimolecular reactions in a solution with linear traps: Application to the problem of target search on DNA
-
Turkin A, van Oijen AM, Turkin AA. 2015. Theory of bimolecular reactions in a solution with linear traps: application to the problem of target search on DNA. Physical Review E 92. doi: 10.1103/PhysRevE.92.052703
-
(2015)
Physical Review E
, pp. 92
-
-
Turkin, A.1
Van Oijen, A.M.2
Turkin, A.A.3
-
30
-
-
84961291326
-
Speeding up biomolecular interactions by molecular sledding
-
Turkin A, Zhang L, Marcozzi A, Mangel WF, Herrmann A, van Oijen AM. 2016. Speeding up biomolecular interactions by molecular sledding. Chemical Science. doi: 10.1039/C5SC03063C
-
(2016)
Chemical Science
-
-
Turkin, A.1
Zhang, L.2
Marcozzi, A.3
Mangel, W.F.4
Herrmann, A.5
Van Oijen, A.M.6
-
31
-
-
79956155368
-
Innate DNA sensing moves to the nucleus
-
Unterholzner L, Bowie AG. 2011. Innate DNA sensing moves to the nucleus. Cell Host & Microbe 9:351-353. doi: 10.1016/j.chom.2011.05.001
-
(2011)
Cell Host & Microbe
, vol.9
, pp. 351-353
-
-
Unterholzner, L.1
Bowie, A.G.2
-
32
-
-
77958140656
-
IFI16 is an innate immune sensor for intracellular DNA
-
Unterholzner L, Keating SE, Baran M, Horan KA, Jensen SB, Sharma S, Sirois CM, Jin T, Latz E, Xiao TS, et al. 2010. IFI16 is an innate immune sensor for intracellular DNA. Nature Immunology 11:997-1004. doi: 10.1038/ni.1932
-
(2010)
Nature Immunology
, vol.11
, pp. 997-1004
-
-
Unterholzner, L.1
Keating, S.E.2
Baran, M.3
Horan, K.A.4
Jensen, S.B.5
Sharma, S.6
Sirois, C.M.7
Jin, T.8
Latz, E.9
Xiao, T.S.10
|