A novel hepatovirus identified in wild woodchuck Marmota himalayana

Scientific Reports

Volumn 6, Issue , 2016, Pages

  Yu, Jie Mei ^a   Li, Li Li ^a   Zhang, Cui Yuan ^a   Lu, Shan ^b   Ao, Yuan Yun ^a   Gao, Han Chun ^a   Xie, Zhiping ^a   Xie, Guang Cheng ^a   Sun, Xiao Man ^a   Pang, Li Li ^a   Xu, Jian Guo ^b   Lipkin, W Ian ^c   Duan, Zhao Jun ^a  

^a National Institute for Viral Disease Control and Prevention   (China)

^b National Institute for Communicable Disease Control and Prevention   (China)

^c NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CODON; EPITOPE; VIRUS ANTIGEN; VIRUS RNA;

ANIMAL; BAYES THEOREM; CLASSIFICATION; CODON; CONFORMATION; DNA BASE COMPOSITION; GENETICS; GENOMICS; GENOTYPE; HEPATOVIRUS; IMMUNOLOGY; MARMOTA; MOLECULAR EVOLUTION; OPEN READING FRAME; PHYLOGENY; ULTRASTRUCTURE; VIROLOGY; VIRUS GENOME;

ANIMALS; ANTIGENS, VIRAL; BASE COMPOSITION; BAYES THEOREM; CODON; EPITOPES; EVOLUTION, MOLECULAR; GENOME, VIRAL; GENOMICS; GENOTYPE; HEPATOVIRUS; MARMOTA; NUCLEIC ACID CONFORMATION; OPEN READING FRAMES; PHYLOGENY; RNA, VIRAL;

EID: 84988565759     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep22361     Document Type: Article

References (49)

1. Koff, R. S. Hepatitis A. Lancet 351, 1643-1649, doi: 10.1016/S0140-6736(98)01304-X (1998).
2. Hepatitis A vaccines. Wkly Epidemiol Rec 75, 38-44 (2000).
3. Jacobsen, K. H. & Wiersma, S. T. Hepatitis A virus seroprevalence by age and world region, 1990 and 2005. Vaccine 28, 6653-6657 (2010).
4. Totsuka, A. & Moritsugu, Y. Hepatitis A virus proteins. Intervirology 42, 63-68 (1999).
5. Weitz, M. & Siegl, G. Variation among hepatitis A virus strains. I. Genomic variation detected by T1 oligonucleotide mapping. Virus Research 4, 53-67 (1985).
6. Baroudy, B. M. et al. Sequence analysis of hepatitis A virus cDNA coding for capsid proteins and RNA polymerase. Proc Natl Acad Sci USA 82, 2143-2147 (1985).
7. Linemeyer, D. L. et al. Molecular cloning and partial sequencing of hepatitis A viral cDNA. J Virol 54, 247-255 (1985).
8. Najarian, R. et al. Primary structure and gene organization of human hepatitis A virus. Proc Natl Acad Sci USA 82, 2627-2631 (1985).
9. Ticehurst, J. R. et al. Molecular cloning and characterization of hepatitis A virus cDNA. Proc Natl Acad Sci USA 80, 5885-5889 (1983).
10. Costa-Mattioli, M. et al. Genetic variability of hepatitis A virus. J Gen Virol 84, 3191-3201 (2003).
11. Desbois, D. et al. Epidemiology and genetic characterization of hepatitis A virus genotype IIA. J Clin Microbiol 48, 3306-3315 (2010).
12. Nainan, O. V., Margolis, H. S., Robertson, B. H., Balayan, M. & Brinton, M. A. Sequence analysis of a new hepatitis A virus naturally infecting cynomolgus macaques (Macaca fascicularis). J Gen Virol 72 (Pt 7), 1685-1689 (1991).
13. Ping, L. H. & Lemon, S. M. Antigenic structure of human hepatitis A virus defined by analysis of escape mutants selected against murine monoclonal antibodies. J Virol 66, 2208-2216 (1992).
14. Wang, X. et al. Hepatitis A virus and the origins of picornaviruses. Nature 517, 85-88 (2015).
15. Vaughan, G. et al. Hepatitis A virus: host interactions, molecular epidemiology and evolution. Infect Genet Evol 21, 227-243 (2014).
16. Shapiro, C. N. & Margolis, H. S. Worldwide epidemiology of hepatitis A virus infection. J Hepatol 18 Suppl 2, S11-14 (1993).
17. Dotzauer, A. et al. Hepatitis A virus-specific immunoglobulin A mediates infection of hepatocytes with hepatitis A virus via the asialoglycoprotein receptor. J Virol 74, 10950-10957 (2000).
18. Dienstag, J. L., Popper, H. & Purcell, R. H. The pathology of viral hepatitis types A and B in chimpanzees. A comparison. Am J Pathol 85, 131-148 (1976).
19. Popper, H., Dienstag, J. L., Feinstone, S. M., Alter, H. J. & Purcell, R. H. The pathology of viral hepatitis in chimpanzees. Virchows Arch A Pathol Anat Histol 387, 91-106 (1980).
20. LeDuc, J. W. et al. Experimental infection of the New World owl monkey (Aotus trivirgatus) with hepatitis A virus. Infect Immun 40, 766-772 (1983).
21. Pinto, M. A. et al. Experimental hepatitis A virus (HAV) infection in Callithrix jacchus: early detection of HAV antigen and viral fate. Exp Toxicol Pathol 53, 413-420 (2002).
22. Baptista, M. L., Marchevsky, R. S., Oliveira, A. V., Yoshida, C. F. & Schatzmayr, H. G. Histopathological and immunohistochemical studies of hepatitis A virus infection in marmoset Callithrix jacchus. Exp Toxicol Pathol 45, 7-13 (1993).
23. Anthony, S. J. et al. Discovery of a Novel Hepatovirus (Phopivirus of Seals) Related to Human Hepatitis A Virus. MBio 6, doi: 10.1128/mBio.01180-15 (2015).
24. Walker, C. M., Feng, Z. & Lemon, S. M. Reassessing immune control of hepatitis A virus. Curr Opin Virol 11, 7-13 (2015).
25. EDWI N A. BROWN, S. P. D., ROBERT, W. JANSEN, STANLEY M. LEMON. The 5′ nontranslated region of hepatitis A virus RNA secondary structure and elements required for translation in vitro. J Virol, 65, 5828-5838 (1991).
26. EdwinA B, A. J. Z. In Vitro Characterization of an Internal Ribosomal Entry Site (IRES) Present within the 5′ Nontranslated Region of Hepatitis A Virus RNA: Comparison with the IRES of Encephalomyocarditis Virus. J Virol 68, 1066-1074 (1994).
27. Deinhardt, F. Prevention of viral hepatitis A: past, present and future. Vaccine 10 Suppl 1, S10-14 (1992).
28. Bishop, N. E., Hugo, D. L., Borovec, S. V. & Anderson, D. A. Rapid and efficient purification of hepatitis A virus from cell culture. J Virol Methods 47, 203-216 (1994).
29. Stanway, G. et al. Molecular and biological characteristics of echovirus 22, a representative of a new picornavirus group. J Virol 68, 8232-8238 (1994).
30. Hynes, R. O. Integrins: versatility, modulation, and signaling in cell adhesion. Cell 69, 11-25 (1992).
31. Sanchez, G., Bosch, A. & Pinto, R. M. Genome variability and capsid structural constraints of hepatitis a virus. J Virol 77, 452-459 (2003).
32. Nainan, O. V., Brinton, M. A. & Margolis, H. S. Identification of amino acids located in the antibody binding sites of human hepatitis A virus. Virology 191, 984-987 (1992).
33. Redondo, N. et al. Translation directed by hepatitis A virus IRES in the absence of active eIF4F complex and eIF2. PLoS One 7, e52065, doi: 10.1371/journal.pone.0052065 (2012).
34. Pacheco, A. & Martinez-Salas, E. Insights into the biology of IRES elements through riboproteomic approaches. J Biomed Biotechnol 2010, 458927, doi: 10.1155/2010/458927 (2010).
35. Yang, Y., Yi, M., Evans, D. J., Simmonds, P. & Lemon, S. M. Identification of a conserved RNA replication element (cre) within the 3Dpol-coding sequence of hepatoviruses. J Virol 82, 10118-10128 (2008).
36. de Paula, V. S. et al. Kinetics of hepatitis A virus replication in vivo and in vitro using negative-strand quantitative PCR. Eur J Clin Microbiol Infect Dis 28, 1167-1176 (2009).
37. Song, Y. J. et al. Experimental evidence of hepatitis A virus infection in pigs. J Med Virol, doi: 10.1002/jmv.24386 (2015).
38. Hornei, B. et al. Experimental hepatitis A virus infection in guinea pigs. J Med Virol 64, 402-409 (2001).
39. Feigelstock, D., Thompson, P., Mattoo, P., Zhang, Y. & Kaplan, G. G. The human homolog of HAVcr-1 codes for a hepatitis A virus cellular receptor. J Virol 72, 6621-6628 (1998).
40. Moratorio, G. et al. Bayesian coalescent inference of hepatitis A virus populations: evolutionary rates and patterns. J Gen Virol 88, 3039-3042 (2007).
41. Brown, B. A., Oberste, M. S., Alexander, J. P. Jr., Kennett, M. L. & Pallansch, M. A. Molecular epidemiology and evolution of enterovirus 71 strains isolated from 1970 to 1998. J Virol 73, 9969-9975 (1999).
42. Gavrilin, G. V., Cherkasova, E. A., Lipskaya, G. Y., Kew, O. M. & Agol, V. I. Evolution of circulating wild poliovirus and of vaccinederived poliovirus in an immunodeficient patient: a unifying model. J Virol 74, 7381-7390 (2000).
43. Freitas, N. et al. Hepatitis delta virus infects the cells of hepadnavirus-induced hepatocellular carcinoma in woodchucks. Hepatology 56, 76-85 (2012).
44. Moreno-Cugnon, L. et al. Characterization and genotyping of the DRB1 gene of the major histocompatibility complex (MHC) in the Marmota monax, animal model of hepatitis B. Mol Immunol 63, 505-512 (2015).
45. Yamazoe, M., Nakai, S., Ogasawara, N. & Yoshikawa, H. Integration of woodchuck hepatitis virus (WHV) DNA at two chromosomal sites (Vk and gag-like) in a hepatocellular carcinoma. Gene 100, 139-146 (1991).
46. Summers, J., Smolec, J. M. & Snyder, R. A virus similar to human hepatitis B virus associated with hepatitis and hepatoma in woodchucks. Proc Natl Acad Sci USA 75, 4533-4537 (1978).
47. Wong, D. C., Shih, J. W., Purcell, R. H., Gerin, J. L. & London, W. T. Natural and experimental infection of woodchucks with woodchuck hepatitis virus, as measured by new, specific assays for woodchuck surface antigen and antibody. J Clin Microbiol 15, 484-490 (1982).
48. Finkbeiner, S. R. et al. Metagenomic analysis of human diarrhea: viral detection and discovery. PLoS Pathog 4, e1000011, doi: 10.1371/journal.ppat.1000011 (2008).
49. Kelley, L. A., Mezulis, S., Yates, C. M., Wass, M. N. & Sternberg, M. J. E. The Phyre2 web portal for protein modeling, prediction and analysis. Nat. Protocols 10, 845-858 (2015).