Sequence analysis of the Hsp70 family in moss and evaluation of their functions in abiotic stress responses

Scientific Reports

Volumn 6, Issue , 2016, Pages

  Tang, Ting ^a,b   Yu, Anmin ^a,b,c   Li, Ping ^a,b   Yang, Hong ^a,b   Liu, Gaojing ^a,b   Liu, Li ^a,b  

^a KUNMING INSTITUTE OF BOTANY   (China)

^b Yunnan Key Laboratory for Wild Plant Resources   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 70;

ADAPTATION; AMINO ACID SEQUENCE; BRYOPSIDA; CHEMISTRY; CHROMOSOMAL MAPPING; CLASSIFICATION; CONSERVED SEQUENCE; DNA SEQUENCE; DROUGHT; EVOLUTION; GENE DUPLICATION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MULTIGENE FAMILY; PHYLOGENY; PHYSIOLOGICAL STRESS; PROMOTER REGION; PROTEIN MOTIF; SALINITY;

ADAPTATION, BIOLOGICAL; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BIOLOGICAL EVOLUTION; BRYOPSIDA; CHROMOSOME MAPPING; CONSERVED SEQUENCE; DROUGHTS; GENE DUPLICATION; GENE EXPRESSION REGULATION, PLANT; HSP70 HEAT-SHOCK PROTEINS; MULTIGENE FAMILY; PHYLOGENY; PROMOTER REGIONS, GENETIC; SALINITY; SEQUENCE ANALYSIS, DNA; STRESS, PHYSIOLOGICAL;

EID: 84988499811     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep33650     Document Type: Article

References (53)

1. Feder, M. E., Hofmann, G. E. Heat-shock proteins, molecular chaperones, and the stress response: Evolutionary and ecological physiology. Annu Rev Physiol 61, 243-282 (1999).
2. Georgopoulos, C., Welch, W. J. Role of the major heat-shock proteins as molecular chaperones. Annu Rev Cell Biol 9, 601-634 (1993).
3. Craig, E. A., Gambill, B. D., Nelson, R. J. Heat-shock proteins-molecular chaperones of protein biogenesis. Microbiol Rev 57, 402-414 (1993).
4. Mayer, M. P., Bukau, B. Hsp70 chaperones: Cellular functions and molecular mechanism. Cell Mol Life Sci 62, 670-684 (2005).
5. Saidi, Y. et al. The heat shock response in moss plants is regulated by specific calcium-permeable channels in the plasma membrane. Plant Cell 21, 2829-2843 (2009).
6. Wang, W. X., Vinocur, B., Shoseyov, O., Altman, A. Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9, 244-252 (2004).
7. Brodsky, J. L., Chiosis, G. Hsp70 molecular chaperones: Emerging roles in human disease and identification of small molecule modulators. Curr Top Med Chem 6, 1215-1225 (2006).
8. Deng, Y. Y., Zhan, Z. F., Tang, X. R., Ding, L. P., Duan, D. L. Molecular cloning and characterization of an Hsp70 gene from the bloom green alga Chaetomorpha valida (Cladophorales, Chlorophyta). J Appl Phycol 27, 489-497 (2015).
9. Karlin, S., Brocchieri, L. Heat shock protein 70 family: Multiple sequence comparisons, function, and evolution. J Mol Evol 47, 565-577 (1998).
10. Renner, T., Waters, E. R. Comparative genomic analysis of the Hsp70s from five diverse photosynthetic eukaryotes. Cell Stress & Chaperones 12, 172-185 (2007).
11. Lin, B. L. et al. Genomic analysis of the Hsp70 superfamily in Arabidopsis thaliana. Cell Stress Chaperon 6, 201-208 (2001).
12. Govind, G. et al. Identification and functional validation of a unique set of drought induced genes preferentially expressed in response to gradual water stress in peanut. Mol Genet Genomics 281, 591-605 (2009).
13. Liu, L., McNeilage, R. T., Shi, L.-x., Theg, S. M. ATP requirement for chloroplast protein import is set by the Km for ATP hydrolysis of stromal Hsp70 in Physcomitrella patens. The Plant Cell 26, 1246-1255 (2014).
14. Shi, L. X., Theg, S. M. A stromal heat shock protein 70 system functions in protein import into chloroplasts in the moss Physcomitrella patens. Plant Cell 22, 205-220 (2010).
15. Hoekstra, F. A., Golovina, E. A., Buitink, J. Mechanisms of plant desiccation tolerance. Trends Plant Sci 6, 431-438 (2001).
16. Brun, F., Gonneau, M., Laloue, M., Nogue, F. Identification of Physcomitrella patens genes specific of bud and gametophore formation. Plant Sci 165, 1267-1274 (2003).
17. Schaefer, D. G., Zryd, J. P. The moss Physcomitrella patens, now and then. Plant Physiol 127, 1430-1438 (2001).
18. Floyd, S. K., Bowman, J. L. The ancestral developmental tool kit of land plants. Int J Plant Sci 168, 1-35 (2007).
19. Rensing, S. A. et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319, 64-69 (2008).
20. Hu, W. H., Hu, G. C., Han, B. Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice. Plant Sci 176, 583-590 (2009).
21. Zhang, J. et al. Hsf and Hsp gene families in Populus: genome-wide identification, organization and correlated expression during development and in stress responses. Bmc Genomics 16 (2015).
22. Buckley, P. T., Khaladkar, M., Kim, J., Eberwine, J. Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis. Wires Rna 5, 223-230 (2014).
23. Chang, C. Y., Lin, W. D., Tu, S. L. Genome-wide analysis of heat-sensitive alternative splicing in Physcomitrella patens. Plant Physiol 165, 826-840 (2014).
24. Wu, H. P. et al. Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens. Genome Biol 15 (2014).
25. Cannon, S. B., Mitra, A., Baumgarten, A., Young, N. D., May, G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 4, 1-21 (2004).
26. Cserhati, M. Motif content comparison between monocot and dicot species. Genomics Data 3, 128-136 (2015).
27. Hudson, M. E., Quail, P. H. Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data. Plant Physiol 133, 1605-1616 (2003).
28. Corrales, A. R. et al. Characterization of tomato Cycling Dof Factors reveals conserved and new functions in the control of flowering time and abiotic stress responses. J Exp Bot 65, 995-1012 (2014).
29. Yanagisawa, S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J 21, 281-288 (2000).
30. Brown, R. L., Kazan, K., McGrath, K. C., Maclean, D. J., Manners, J. M. A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis. Plant Physiol 132, 1020-1032 (2003).
31. Chakravarthy, S. et al. The tomato transcription factor Pti4 regulates defense-related gene expression via GCC box and non-GCC box cis elements. Plant Cell 15, 3033-3050 (2003).
32. Sarkar, N. K., Kundnani, P., Grover, A. Functional analysis of Hsp70 superfamily proteins of rice (Oryza sativa). Cell Stress Chaperon 18, 427-437 (2013).
33. Germot, A., Philippe, H., LeGuyader, H. Presence of a mitochondrial-type 70-kDa heat shock protein in Trichomonas vaginalis suggests a very early mitochondrial endosymbiosis in eukaryotes. P Natl Acad Sci USA 93, 14614-14617 (1996).
34. Liu, S. H. et al. Characterization and expression analysis of a mitochondrial heat-shock protein 70 gene from the Antarctic moss Pohlia nutans. Polar Biol 37, 1145-1155 (2014).
35. Alvim, F. C. et al. Enhanced accumulation of BiP in transgenic plants confers tolerance to water stress. Plant Physiol 126, 1042-1054 (2001).
36. Ramsey, A. J., Russell, L. C., Chinkers, M. C-terminal sequences of hsp70 and hsp90 as non-specific anchors for tetratricopeptide repeat (TPR) proteins. Biochem J 423, 411-419 (2009).
37. Hiss, M. et al. Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions. Plant J 79, 530-539 (2014).
38. Kim, S. R., An, G. Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions. J Plant Physiol 170, 854-863 (2013).
39. Su, P. H., Li, H. M. Arabidopsis stromal 70-kD heat shock proteins are essential for plant development and important for thermotolerance of germinating seeds. Plant Physiol 146, 1231-1241 (2008).
40. Rensing, S. A. et al. An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens. Bmc Evol Biol 7 (2007).
41. Zhang, J. Z. Evolution by gene duplication: an update. Trends Ecol Evol 18, 292-298 (2003).
42. Lynch, M., Conery, J. S. The evolutionary fate and consequences of duplicate genes. Science 290, 1151-1155 (2000).
43. Caetano-Anolles, G., Kim, K. M., Caetano-Anolles, D. The phylogenomic roots of modern biochemistry: origins of Proteins, cofactors and protein biosynthesis. Journal Mol Evol 74, 1-34 (2012).
44. Yu, A. M. et al. Roles of Hsp70s in stress responses of microorganisms,plants, and animals. Biomed Res Int (2015).
45. Rosic, N. N., Pernice, M., Dove, S., Dunn, S., Hoegh-Guldberg, O. Gene expression profiles of cytosolic heat shock proteins Hsp70 and Hsp90 from symbiotic dinoflagellates in response to thermal stress: possible implications for coral bleaching. Cell Stress Chaperon 16, 69-80 (2011).
46. Jiang, C., Iu, B., Singh, J. Requirement of a CCGAC cis-acting element for cold induction of the BN115 gene from winter Brassica napus. Plant Mol Biol 30, 679-684 (1996).
47. Narusaka, Y. et al. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J 34, 137-148 (2003).
48. Singh, A. et al. Comprehensive genomic analysis and expression profiling of phospholipase C gene family during abiotic stresses and development in rice. Plos One 8 (2013).
49. Small, I., Peeters, N., Legeai, F., Lurin, C. Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics 4, 1581-1590 (2004).
50. Zdobnov, E. M., Apweiler, R. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17, 847-848 (2001).
51. Gouet, P., Robert, X., Courcelle, E. ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins. Nucleic Acids Res 31, 3320-3323 (2003).
52. Bailey, T. L., Williams, N., Misleh, C., Li, W. W. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34, W369-W373 (2006).
53. Woo, N., Badger, M., Pogson, B. A rapid, non-invasive procedure for quantitative assessment of drought survival using chlorophyll fluorescence. Plant Methods 4, 27 (2008).