-
1
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmorre SF, Schroth GP, Burge CB. Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456:470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmorre, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
2
-
-
84884830403
-
Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons
-
Khaladkar M, Buckley P, Lee M, Francis C, Eghbal M, Chuong T, Suresh S, Kuhn B, Eberwine J, Kim J. Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons. PLOS ONE, 2013, 8:e76194.
-
(2013)
PLOS ONE
, vol.8
-
-
Khaladkar, M.1
Buckley, P.2
Lee, M.3
Francis, C.4
Eghbal, M.5
Chuong, T.6
Suresh, S.7
Kuhn, B.8
Eberwine, J.9
Kim, J.10
-
3
-
-
79952227406
-
Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons
-
Buckley PT, Lee MT, Sul JY, Miyashiro KY, Bell TJ, Fisher SA, Kim J, Eberwine J. Cytoplasmic intron sequence-retaining transcripts can be dendritically targeted via ID element retrotransposons. Neuron 2011, 69:877-884.
-
(2011)
Neuron
, vol.69
, pp. 877-884
-
-
Buckley, P.T.1
Lee, M.T.2
Sul, J.Y.3
Miyashiro, K.Y.4
Bell, T.J.5
Fisher, S.A.6
Kim, J.7
Eberwine, J.8
-
4
-
-
84881159187
-
Orchestrated intron retention regulates normal granulocyte differentiation
-
Wong JJ, Ritchie W, Ebner OA, Selbach M, Wong JW, Huang Y, Gao D, Pinello N, Gonzalez M, Baidya K, et al. Orchestrated intron retention regulates normal granulocyte differentiation. Cell 2013, 154:583-595.
-
(2013)
Cell
, vol.154
, pp. 583-595
-
-
Wong, J.J.1
Ritchie, W.2
Ebner, O.A.3
Selbach, M.4
Wong, J.W.5
Huang, Y.6
Gao, D.7
Pinello, N.8
Gonzalez, M.9
Baidya, K.10
-
5
-
-
33646159973
-
A profile of alternative RNA splicing and transcript variation of CACNA1H, a human T-channel gene candidate for idiopathic generalized epilepsies
-
Zhong X, Liu JR, Kyle JW, Hanck DA, Agnew WS. A profile of alternative RNA splicing and transcript variation of CACNA1H, a human T-channel gene candidate for idiopathic generalized epilepsies. Hum Mol Genet 2006, 15:1497-1512.
-
(2006)
Hum Mol Genet
, vol.15
, pp. 1497-1512
-
-
Zhong, X.1
Liu, J.R.2
Kyle, J.W.3
Hanck, D.A.4
Agnew, W.S.5
-
6
-
-
3542992041
-
Intron retention generates a novel Id3 isoform that inhibits vascular lesion formation
-
Forrest ST, Barringhaus KG, Perlegas D, Hammarskjold ML, McNamara CA. Intron retention generates a novel Id3 isoform that inhibits vascular lesion formation. J Biol Chem 2004, 279:32897-32903.
-
(2004)
J Biol Chem
, vol.279
, pp. 32897-32903
-
-
Forrest, S.T.1
Barringhaus, K.G.2
Perlegas, D.3
Hammarskjold, M.L.4
McNamara, C.A.5
-
7
-
-
23744515307
-
Escaping the nuclear confines: signal-dependent pre-mRNA splicing in anucleate platelets
-
Denis MM, Tolley ND, Bunting M, Schwertz H, Jiang H, Lindemann S, Yost CC, Rubner FJ, Albertine KH, Swoboda KJ, et al. Escaping the nuclear confines: signal-dependent pre-mRNA splicing in anucleate platelets. Cell 2005, 122:379-391.
-
(2005)
Cell
, vol.122
, pp. 379-391
-
-
Denis, M.M.1
Tolley, N.D.2
Bunting, M.3
Schwertz, H.4
Jiang, H.5
Lindemann, S.6
Yost, C.C.7
Rubner, F.J.8
Albertine, K.H.9
Swoboda, K.J.10
-
8
-
-
28544450974
-
Developmental regulation of a proinsulin messenger RNA generated by intron retention
-
Mansilla A, Lopez-Sanchez C, de la Rosa EJ, Garcia-Martinez V, Martinez-Salas E, de Pablo F, Hernandez-Sanchez C. Developmental regulation of a proinsulin messenger RNA generated by intron retention. EMBO Rep 2005, 6:1182-1187.
-
(2005)
EMBO Rep
, vol.6
, pp. 1182-1187
-
-
Mansilla, A.1
Lopez-Sanchez, C.2
de la Rosa, E.J.3
Garcia-Martinez, V.4
Martinez-Salas, E.5
de Pablo, F.6
Hernandez-Sanchez, C.7
-
9
-
-
41149085493
-
Cytoplasmic BK(Ca) channel intron-containing mRNAs contribute to the intrinsic excitability of hippocampal neurons
-
Bell TJ, Miyashiro KY, Sul JY, McCullough R, Buckley PT, Jochems J, Meaney DF, Haydon P, Cantor CR, Parsons TD, et al. Cytoplasmic BK(Ca) channel intron-containing mRNAs contribute to the intrinsic excitability of hippocampal neurons. Proc Natl Acad Sci U S A 2008, 105:1901-1906.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 1901-1906
-
-
Bell, T.J.1
Miyashiro, K.Y.2
Sul, J.Y.3
McCullough, R.4
Buckley, P.T.5
Jochems, J.6
Meaney, D.F.7
Haydon, P.8
Cantor, C.R.9
Parsons, T.D.10
-
10
-
-
78650497224
-
Intron retention facilitates splice variant diversity in calcium-activated big potassium channel populations
-
Bell TJ, Miyashiro KY, Sul JY, Buckley PT, Lee MT, McCullough R, Jochems J, Kim J, Cantor CR, Parsons TD, et al. Intron retention facilitates splice variant diversity in calcium-activated big potassium channel populations. Proc Natl Acad Sci U S A 2010, 107:21152-21157.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 21152-21157
-
-
Bell, T.J.1
Miyashiro, K.Y.2
Sul, J.Y.3
Buckley, P.T.4
Lee, M.T.5
McCullough, R.6
Jochems, J.7
Kim, J.8
Cantor, C.R.9
Parsons, T.D.10
-
11
-
-
84862001662
-
Retention of a new-defined intron changes pharmacology and kinetics of the full-length P2X2 receptor found in myenteric neurons of the guinea pig
-
Linan-Rico A, Jaramillo-Polanco J, Espinosa-Luna R, Jimenez-Bremont JF, Linan-Rico L, Montano LM, Barajas-Lopez C. Retention of a new-defined intron changes pharmacology and kinetics of the full-length P2X2 receptor found in myenteric neurons of the guinea pig. Neuropharmacology 2012, 63:394-404.
-
(2012)
Neuropharmacology
, vol.63
, pp. 394-404
-
-
Linan-Rico, A.1
Jaramillo-Polanco, J.2
Espinosa-Luna, R.3
Jimenez-Bremont, J.F.4
Linan-Rico, L.5
Montano, L.M.6
Barajas-Lopez, C.7
-
12
-
-
42949178115
-
Alternative splicing of the Robo3 axon guidance receptor governs the midline switch from attraction to repulsion
-
Chen Z, Gore BB, Long H, Ma L, Tessier-Lavigne M. Alternative splicing of the Robo3 axon guidance receptor governs the midline switch from attraction to repulsion. Neuron 2008, 58:325-332.
-
(2008)
Neuron
, vol.58
, pp. 325-332
-
-
Chen, Z.1
Gore, B.B.2
Long, H.3
Ma, L.4
Tessier-Lavigne, M.5
-
13
-
-
0035896529
-
Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor
-
Lejeune F, Cavaloc Y, Stevenin J. Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem 2001, 276:7850-7858.
-
(2001)
J Biol Chem
, vol.276
, pp. 7850-7858
-
-
Lejeune, F.1
Cavaloc, Y.2
Stevenin, J.3
-
14
-
-
0042671357
-
Pre-mRNA splicing: awash in a sea of proteins
-
Jurica MS, Moore MJ. Pre-mRNA splicing: awash in a sea of proteins. Mol Cell 2003, 12:5-14.
-
(2003)
Mol Cell
, vol.12
, pp. 5-14
-
-
Jurica, M.S.1
Moore, M.J.2
-
15
-
-
84871429958
-
The significant other: splicing by the minor spliceosome
-
Turunen JJ, Niemela EH, Verma B, Frilander MJ. The significant other: splicing by the minor spliceosome. WIREs RNA 2013, 4:61-76.
-
(2013)
WIREs RNA
, vol.4
, pp. 61-76
-
-
Turunen, J.J.1
Niemela, E.H.2
Verma, B.3
Frilander, M.J.4
-
16
-
-
36049047997
-
Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation
-
Konig H, Matter N, Bader R, Thiele W, Muller F. Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation. Cell 2007, 131:718-729.
-
(2007)
Cell
, vol.131
, pp. 718-729
-
-
Konig, H.1
Matter, N.2
Bader, R.3
Thiele, W.4
Muller, F.5
-
17
-
-
47949092128
-
Minor-class splicing occurs in the nucleus of the Xenopus oocyte
-
Friend K, Kolev NG, Shu MD, Steitz JA. Minor-class splicing occurs in the nucleus of the Xenopus oocyte. RNA 2008, 14:1459-1462.
-
(2008)
RNA
, vol.14
, pp. 1459-1462
-
-
Friend, K.1
Kolev, N.G.2
Shu, M.D.3
Steitz, J.A.4
-
18
-
-
47249165116
-
Minor spliceosome components are predominantly localized in the nucleus
-
Pessa HK, Will CL, Meng X, Schneider C, Watkins NJ, Perala N, Nymark M, Turunen JJ, Luhrmann R, Frilander MJ. Minor spliceosome components are predominantly localized in the nucleus. Proc Natl Acad Sci U S A 2008, 105:8655-8660.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 8655-8660
-
-
Pessa, H.K.1
Will, C.L.2
Meng, X.3
Schneider, C.4
Watkins, N.J.5
Perala, N.6
Nymark, M.7
Turunen, J.J.8
Luhrmann, R.9
Frilander, M.J.10
-
19
-
-
70350754211
-
Rates of in situ transcription and splicing in large human genes
-
Singh J, Padgett RA. Rates of in situ transcription and splicing in large human genes. Nat Struct Mol Biol 2009, 16:1128-1133.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1128-1133
-
-
Singh, J.1
Padgett, R.A.2
-
20
-
-
35848937986
-
Unconventional splicing of XBP-1 mRNA in the unfolded protein response
-
Yoshida H. Unconventional splicing of XBP-1 mRNA in the unfolded protein response. Antioxid Red Signal 2007, 9:2323-2333.
-
(2007)
Antioxid Red Signal
, vol.9
, pp. 2323-2333
-
-
Yoshida, H.1
-
22
-
-
36248949141
-
The endoplasmic reticulum and the unfolded protein response
-
Malhotra JD, Kaufman RJ. The endoplasmic reticulum and the unfolded protein response. Sem Cell Dev Biol 2007, 18:716-731.
-
(2007)
Sem Cell Dev Biol
, vol.18
, pp. 716-731
-
-
Malhotra, J.D.1
Kaufman, R.J.2
-
23
-
-
7744232493
-
Misfolded proteins, endoplasmic reticulum stress and neurodegeneration
-
Rao RV, Bredesen DE. Misfolded proteins, endoplasmic reticulum stress and neurodegeneration. Curr Opin Cell Biol 2004, 16:653-662.
-
(2004)
Curr Opin Cell Biol
, vol.16
, pp. 653-662
-
-
Rao, R.V.1
Bredesen, D.E.2
-
24
-
-
28044453909
-
RNA splicing capability of live neuronal dendrites
-
Glanzer J, Miyashiro KY, Sul JY, Barrett L, Belt B, Haydon P, Eberwine J. RNA splicing capability of live neuronal dendrites. Proc Natl Acad Sci U S A 2005, 102:16859-16864.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 16859-16864
-
-
Glanzer, J.1
Miyashiro, K.Y.2
Sul, J.Y.3
Barrett, L.4
Belt, B.5
Haydon, P.6
Eberwine, J.7
-
25
-
-
0035812716
-
Block of HAC1 mRNA translation by long-range base pairing is released by cytoplasmic splicing upon induction of the unfolded protein response
-
Ruegsegger U, Leber JH, Walter P. Block of HAC1 mRNA translation by long-range base pairing is released by cytoplasmic splicing upon induction of the unfolded protein response. Cell 2001, 107:103-114.
-
(2001)
Cell
, vol.107
, pp. 103-114
-
-
Ruegsegger, U.1
Leber, J.H.2
Walter, P.3
-
26
-
-
33745820796
-
Cytoplasmic IRE1α-mediated XBP1 mRNA splicing in the absence of nuclear processing and endoplasmic reticulum stress
-
Back SH, Lee K, Vink E, Kaufman RJ. Cytoplasmic IRE1α-mediated XBP1 mRNA splicing in the absence of nuclear processing and endoplasmic reticulum stress. J Biol Chem 2006, 281:18691-18706.
-
(2006)
J Biol Chem
, vol.281
, pp. 18691-18706
-
-
Back, S.H.1
Lee, K.2
Vink, E.3
Kaufman, R.J.4
-
27
-
-
33646717550
-
Deniz A: siRNA in human cells selectively localizes to target RNA sites
-
Berezhna S, Supekova L, Supek F, Schultz P. Deniz A: siRNA in human cells selectively localizes to target RNA sites. Proc Natl Acad Sci 2006, 103:7682-87.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 7682-7687
-
-
Berezhna, S.1
Supekova, L.2
Supek, F.3
Schultz, P.4
-
28
-
-
67650299463
-
Control of alternative splicing through siRNA-mediated transcriptional gene silencing
-
Allo M, Buggiano V, Fededa JP, Petrillo E, Schor I, de la Mata M, Agirre E, Plass M, Eyras E, Elela SA, et al. Control of alternative splicing through siRNA-mediated transcriptional gene silencing. Nat Struct Mol Biol 2009, 16:717-724.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 717-724
-
-
Allo, M.1
Buggiano, V.2
Fededa, J.P.3
Petrillo, E.4
Schor, I.5
de la Mata, M.6
Agirre, E.7
Plass, M.8
Eyras, E.9
Elela, S.A.10
-
30
-
-
84877818178
-
Nonsense-mediated mRNA decay-mechanisms of substrate mRNA recognition and degradation in mammalian cells
-
Schweingruber C, Rufener SC, Zund D, Yamashita A, Muhlemann O. Nonsense-mediated mRNA decay-mechanisms of substrate mRNA recognition and degradation in mammalian cells. Biochim Biophys Acta 2013, 1829:612-623.
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 612-623
-
-
Schweingruber, C.1
Rufener, S.C.2
Zund, D.3
Yamashita, A.4
Muhlemann, O.5
|