Heat shock protein 70 family: Multiple sequence comparisons, function, and evolution

Journal of Molecular Evolution

Volumn 47, Issue 5, 1998, Pages 565-577

  Karlin, Samuel ^a   Brocchieri, Luciano ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

70 kD heat shock protein; Archaea; Chaperonine; Eubacteria; Eukaryotes; Evolution; Multiple alignment; SSPA

Indexed keywords

BACTERIAL PROTEIN; HEAT SHOCK PROTEIN 70;

AMINO ACID SEQUENCE; ARCHAEBACTERIUM; ARTICLE; CONFORMATIONAL TRANSITION; EUBACTERIUM; EUKARYOTE; MOLECULAR EVOLUTION; NONHUMAN; PROTEIN FOLDING; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; CONSENSUS SEQUENCE; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; HSP70 HEAT-SHOCK PROTEINS; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID; SPECIES SPECIFICITY;

EID: 0031764686     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006413     Document Type: Article

References (37)

1. Baldauf SL, Palmer JD, Doolittle WF (1996) The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc Natl Acad Sci USA 93:7749-7754
2. Benachenhou-Lahfa N, Forterre P, Lahedan B (1993) Evolution of glutamate dehydrogenase genes: Evidence for two paralogous protein families and unusual branching patterns of the archaehacteria in the universal tree of life. J Mol Evol 36:335-346
3. Blond-Elguindi S, Cwirla SE, Dower WJ, Lipshutz RJ, Sprang SR, Sambrook JF, Gething MJ (1994) Affinity panning of a library of peptides displayed on bacteriophages reveals the binding specificity of BiP. Cell 75:717-728.
4. Boorstein WR, Ziegelhoffer T, Craig EA (1994) Molecular evolution of the HSP70 multigene family. J Mol Evol 38:1-17
5. Brendel V, Bucher P, Nourbakhsh IR, Blaisdell BE, Karlin S (1992) Methods and algorithms for statistical analysis of protein sequences. Proc Natl Acad Sci USA 89:2002-2006
6. Brendel V, Brocchieri L, Sandler SJ, Clark AJ, Karlin S (1997) Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms. J Mol Evol 44:528-541
7. Brocchieri L, Karlin S (1998) A symmetric-iterated multiple alignment of protein sequences. J Mol Biol 276:249-264
8. Brown JR, Doolittle WF (1997) Archaea and the Prokaryote-to-Eukaryote transition. Microbiol Mol Biol Rev 61:456-502
9. Brown JR, Masuchi Y, Robb FT, Doolittle WF (1994) Evolutionary relationships of bacterial and archaeal glutamine synthetase genes. J Mol Evol 38:566-576
10. Creti R, Ceccarelli E, Bocchetta M, Sanangelantoni AM, Tiboni O, Palm P, Cammarano P (1994) Evolution of translational elongation factor (EF) sequences: Reliability of global phylogenies inferred from EF-1 alpha(Tu) and EF-2(G) proteins. Proc Natl Acad Sci USA 91:3255-3259
11. Doolittle WF (1996) At the core of the Archaea. Proc Natl Acad Sci USA 93:8797-8799
12. Flynn GC, Pohl J, Flocco MT, Rothman JE (1991) Peptide-binding specificity of the molecular chaperone BiP. Nature 353:726-730
13. Germot A, Philippe H, Le Guyader H (1996) Presence of a mitochondrial-type 70-kDa heat shock protein in Trichomonas vaginalis suggests a very early mitochondrial endosymbiosis in eukaryotes. Proc Natl Acad Sci USA 93:14614-14617
14. Gething MJ, Sambrook J (1992) Protein folding in the cell. Nature 355:33-45
15. Gray MW, Spencer DE (1996) Organellar evolution in Evolution of Microbial Life eds. Roberts DM, Sharp P, Alderson G, Collins MA, Cambridge Univ Press. 109-126
16. Grishin NV (1995) Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. J Mol Evol 41:675-679
17. Gupta RS, Golding GB (1993) Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes. J Mol Evol 37:573-582
18. Gupta RS, Golding GB (1996) The origin of the eukaryotic cell. Trends Biochem Sci 21:166-171
19. Gupta RS, Singh B (1994) Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus. Curr Biol 4:1104-1114
20. Gupta RS, Bustard K, Falah M, Singh D (1997) Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes. J Bacteriol 179:345-357
21. Iwabe N, Kuma K, Hasegawa M, Osawa S, Miyata T (1989) Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc Natl Acad Sci USA 86:9355-9359
22. Karlin S (1994) Statistical studies of bimolecular sequences: scorebased methods. Phil Trans R Soc Lond B 344:391-402
23. Karlin S (1995) Statistical significance of sequence patterns in proteins. Curr Opin Struct Biol 5:360-371
24. Karlin S, Brocchieri L (1996) Evolutionary conservation of RecA genes in relation to protein structure and function. J Bacteriol 178: 1881-1894
25. Karlin S, Campbell AM (1994) Which bacterium is the ancestor of the animal mitochondrial genome? Proc Natl Acad Sci USA 91:12842-12846
26. Karlin S, Cardon L (1994) Computational DNA sequence analysis. Annu Rev Microbiol 48:619-654
27. Karlin S, Mrázek J (1997a) Compositional differences within and between eukaryotic genomes. Proc Natl Acad Sci USA 94:10227-10232
28. Karlin S, Mrázek J (1997b) Prokaryotic genome-wide comparisons and evolutionary implications. In: de Bruijn FJ, Lupski J, Weinstock G (eds). Bacterial genomes: Physical structure and analysis, in press. Chapman, Hall, New York
29. Karlin S, Blaisdell BE, Brendel V (1990) Identification of significant sequence patterns in proteins. In: Doolittle R (ed) Methods of enzymology, Academic Press, San Diego, CA
30. Karlin S, Weinstock G, Brendel V (1995) Bacterial classifications derived from RecA protein sequence comparisons. J Bacteriol 177: 6881-6893
31. Karlin S, Mrázek J, Campbell AM (1997) Compositional biases of bacterial genomes and evolutionary implications. J Bacteriol 179: 3899-3913
32. Lake JA (1994) Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances. Proc Natl Acad Sci 91:1455-1459
33. Ortner S, Plaimauer B, Binder M, Wiedermann G, Scheiner O, Duchene M (1992) Humoral immune response against a 70-kilodalton heat shock protein of Entamoeba histolytica in a group of patients with invasive amoebiases. Mol Biochem Parasitol 54:175-184
34. Roger AJ, Clark CG, Doolittle WF (1996) A possible mitochondnal gene in the early-branching amitochondriate protist Trichomonas vaginalis. Proc Natl Acad Sci USA 93:14618-14622
35. Roger AJ, Svard SG, Tovar J, Clark CG, Smith MW, Gillin FD, Sogin ML (1998) A mitochondrial-like chaperonin 60 gene in Giardia lamblia: Evidence that diplomonads once harbored an endosymbiont related to the progenitor of mitochondria. Proc Natl Acad Sci USA 95:229-234
36. Viale AM, Arakaki AK (1994) The chaperonin connection to the origins of the eukaryotic organelles. FEBS LETT 341:146-151
37. Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eukarya. Proc Natl Acad Sci USA 87:4576-4579