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Volumn 63, Issue , 2016, Pages 337-343

Identification, analysis, and interpretation of a human serum metabolomics causal network in an observational study

Author keywords

Causal Bayesian network; Data integration; Instrumental variables; Metabolomics; module

Indexed keywords

AMINO ACIDS; BIOMOLECULES; BODY FLUIDS; DATA INTEGRATION; DIRECTED GRAPHS; GENES;

EID: 84987904669     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2016.08.017     Document Type: Article
Times cited : (29)

References (35)
  • 2
    • 0346728474 scopus 로고    scopus 로고
    • Design of gene circuits: lessons from bacteria
    • [2] Wall, M.E., Hlavacek, W.S., Savageau, M.A., Design of gene circuits: lessons from bacteria. Nat. Rev. Genet. 5:1 (2004), 34–42.
    • (2004) Nat. Rev. Genet. , vol.5 , Issue.1 , pp. 34-42
    • Wall, M.E.1    Hlavacek, W.S.2    Savageau, M.A.3
  • 3
    • 84939516051 scopus 로고    scopus 로고
    • MetaMapR: pathway independent metabolomic network analysis incorporating unknowns
    • btv194
    • [3] Grapov, D., Wanichthanarak, K., Fiehn, O., MetaMapR: pathway independent metabolomic network analysis incorporating unknowns. Bioinformatics, 2015 btv194.
    • (2015) Bioinformatics
    • Grapov, D.1    Wanichthanarak, K.2    Fiehn, O.3
  • 4
    • 84897403587 scopus 로고    scopus 로고
    • Statistical methods for the analysis of high-throughput metabolomics data
    • [4] Bartel, J., Krumsiek, J., Theis, F.J., Statistical methods for the analysis of high-throughput metabolomics data. Comput. Struct. Biotechnol. J., 4(5), 2013, e201301009.
    • (2013) Comput. Struct. Biotechnol. J. , vol.4 , Issue.5 , pp. e201301009
    • Bartel, J.1    Krumsiek, J.2    Theis, F.J.3
  • 5
    • 79251567361 scopus 로고    scopus 로고
    • Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data
    • [5] Krumsiek, J., Suhre, K., Illig, T., Adamski, J., Theis, F.J., Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data. BMC Syst. Biol., 5(21), 2011.
    • (2011) BMC Syst. Biol. , vol.5 , Issue.21
    • Krumsiek, J.1    Suhre, K.2    Illig, T.3    Adamski, J.4    Theis, F.J.5
  • 6
    • 14944344423 scopus 로고    scopus 로고
    • Causal inference using potential outcomes: design, modeling, decisions
    • [6] Rubin, D.B., Causal inference using potential outcomes: design, modeling, decisions. J. Am. Stat. Assoc. 100 (2005), 322–331.
    • (2005) J. Am. Stat. Assoc. , vol.100 , pp. 322-331
    • Rubin, D.B.1
  • 7
    • 0003398906 scopus 로고    scopus 로고
    • Causality: Models, Reasoning, and Inference
    • Cambridge University Press New York
    • [7] Pearl, J., Causality: Models, Reasoning, and Inference. 2009, Cambridge University Press, New York.
    • (2009)
    • Pearl, J.1
  • 8
    • 84870273403 scopus 로고    scopus 로고
    • Fundamentals of statistical causality
    • Research Report 279 Department of Statistical Science, University College London
    • [8] Dawid, A.P., Fundamentals of statistical causality. Research Report 279, 2007, Department of Statistical Science, University College London.
    • (2007)
    • Dawid, A.P.1
  • 9
    • 84981548102 scopus 로고    scopus 로고
    • Causal inference at the population level
    • [9] Yazdani, A., Boerwinkle, E., Causal inference at the population level. Int. J. Res. Med. Sci. 2:4 (2014), 1368–1370.
    • (2014) Int. J. Res. Med. Sci. , vol.2 , Issue.4 , pp. 1368-1370
    • Yazdani, A.1    Boerwinkle, E.2
  • 10
    • 84962866775 scopus 로고    scopus 로고
    • Generating a robust statistical causal structure over 13 cardiovascular disease risk factors by data integration
    • [10] Yazdani, A., Yazdani, A., Samiei, A., Boerwinkle, E., Generating a robust statistical causal structure over 13 cardiovascular disease risk factors by data integration. J. Biomed. Inform., 2016.
    • (2016) J. Biomed. Inform.
    • Yazdani, A.1    Yazdani, A.2    Samiei, A.3    Boerwinkle, E.4
  • 11
    • 84899953597 scopus 로고    scopus 로고
    • Instrumental variable methods for causal inference
    • [11] Baiocchi, M., Cheng, J., Small, D., Instrumental variable methods for causal inference. Stat. Med. 33:13 (2014), 2297–2340.
    • (2014) Stat. Med. , vol.33 , Issue.13 , pp. 2297-2340
    • Baiocchi, M.1    Cheng, J.2    Small, D.3
  • 13
    • 84971333790 scopus 로고    scopus 로고
    • Metabolomic pathways influencing plasma triglyceride levels identified by causal network analysis
    • [13] Yazdani, A., Yazdani, A., Samiei, A., Boerwinkle, E., Metabolomic pathways influencing plasma triglyceride levels identified by causal network analysis. Metabolomics, 12, 2016, 104.
    • (2016) Metabolomics , vol.12 , pp. 104
    • Yazdani, A.1    Yazdani, A.2    Samiei, A.3    Boerwinkle, E.4
  • 14
    • 84981485021 scopus 로고    scopus 로고
    • A causal network analysis of the fatty acid metabolome in african-americans reveals a critical role for palmitoleate and margarate
    • [14] Yazdani, A., Yazdani, A., Boerwinkle, E., A causal network analysis of the fatty acid metabolome in african-americans reveals a critical role for palmitoleate and margarate. OMICS: J. Integr. Biol., 2016.
    • (2016) OMICS: J. Integr. Biol.
    • Yazdani, A.1    Yazdani, A.2    Boerwinkle, E.3
  • 15
    • 84981558344 scopus 로고    scopus 로고
    • Identification of rare variants on metabolites in the pathway of carnitine for whole genome sequencing data analysis
    • [15] Yazdani, A., Yazdani, A., Liu, X., Boerwinkle, E., Identification of rare variants on metabolites in the pathway of carnitine for whole genome sequencing data analysis. Genet. Epidemiol., 6, 2016, 80.
    • (2016) Genet. Epidemiol. , vol.6 , pp. 80
    • Yazdani, A.1    Yazdani, A.2    Liu, X.3    Boerwinkle, E.4
  • 16
    • 0024591825 scopus 로고
    • The Atherosclerosis Risk in Communities (ARIC) Study: design and objectives, The ARIC investigators
    • [16] The ARIC Investigators, The Atherosclerosis Risk in Communities (ARIC) Study: design and objectives, The ARIC investigators. Am. J. Epidemiol. 129:4 (1989), 687–702.
    • (1989) Am. J. Epidemiol. , vol.129 , Issue.4 , pp. 687-702
    • The ARIC Investigators1
  • 17
    • 34948862822 scopus 로고    scopus 로고
    • Sequential imputation for missing values
    • [17] Verboven, S., Branden, K.V., Goos, P., Sequential imputation for missing values. Comput. Biol. Chem. 31:5 (2007), 320–327.
    • (2007) Comput. Biol. Chem. , vol.31 , Issue.5 , pp. 320-327
    • Verboven, S.1    Branden, K.V.2    Goos, P.3
  • 18
    • 84950290044 scopus 로고    scopus 로고
    • A hybrid Bayesian approach for genome-wide association studies on related individuals
    • btv496
    • [18] Yazdani, A., Dunson, D.B., A hybrid Bayesian approach for genome-wide association studies on related individuals. Bioinformatics, 2015 btv496.
    • (2015) Bioinformatics
    • Yazdani, A.1    Dunson, D.B.2
  • 19
    • 84981558351 scopus 로고    scopus 로고
    • Causal inference in the age of decision medicine
    • 2153-0602
    • [19] Yazdani, A., Boerwinkle, E., Causal inference in the age of decision medicine. J. Data Mining Genom. Proteom., 6(163), 2015 2153-0602.
    • (2015) J. Data Mining Genom. Proteom. , vol.6 , Issue.163
    • Yazdani, A.1    Boerwinkle, E.2
  • 20
    • 84987853979 scopus 로고    scopus 로고
    • The Causal Foundations of Structural Equation Modeling. Handbook of Structural Equation Modeling (June)
    • [20] J. Pearl, The Causal Foundations of Structural Equation Modeling. Handbook of Structural Equation Modeling (June), 2012, pp. 68–91.
    • (2012) , pp. 68-91
    • Pearl, J.1
  • 21
    • 84971243843 scopus 로고    scopus 로고
    • Conceptual aspects of causal networks in an applied context
    • [21] Yazdani, A., Yazdani, A., Boerwinkle, E., Conceptual aspects of causal networks in an applied context. J. Data Mining Genom. Proteom., 7, 2016, 188, 10.4172/2153-0602.1000188.
    • (2016) J. Data Mining Genom. Proteom. , vol.7 , pp. 188
    • Yazdani, A.1    Yazdani, A.2    Boerwinkle, E.3
  • 22
    • 84870885331 scopus 로고    scopus 로고
    • Fuzzy Classification Method in Credit Risk. in: Int. Conf. Computer and Computational Intelligence, Springer, 2012, pp. 495–505
    • [22] H. Yazdani, H. Kwasnicka, Fuzzy Classification Method in Credit Risk. in: Int. Conf. Computer and Computational Intelligence, Springer, 2012, pp. 495–505, http://dx.doi.org/10.1007/978-3-642-34630-9_51.
    • Yazdani, H.1    Kwasnicka, H.2
  • 23
    • 85140043734 scopus 로고    scopus 로고
    • New Similarity Functions, Third International Conference On Artificial Intelligence and Pattern Recognition, 2016.
    • [23] H. Yazdani, D. Ortiz-Arroyo, H. Kwasnicka, L.A. Zadeh, New Similarity Functions, Third International Conference On Artificial Intelligence and Pattern Recognition, 2016.
    • Yazdani, H.1    Ortiz-Arroyo, D.2    Kwasnicka, H.3    Zadeh, L.A.4
  • 24
    • 80053065833 scopus 로고    scopus 로고
    • Multi Objective Particle Swarm Optimization Using Fuzzy Logic. in: Int. Conf. Computer and Computational Intelligence, Springer, 2011, pp. 224–233. Available from: <>.
    • [24] H. Yazdani, H. Kwasnicka, D. Ortiz-Arroyo, Multi Objective Particle Swarm Optimization Using Fuzzy Logic. in: Int. Conf. Computer and Computational Intelligence, Springer, 2011, pp. 224–233. Available from: < http://link.springer.com/chapter/10.1007%2F978-3-642-23935-9_22>.
    • Yazdani, H.1    Kwasnicka, H.2    Ortiz-Arroyo, D.3
  • 25
    • 84862170499 scopus 로고    scopus 로고
    • The production of p-Cresol sulfate and indoxyl sulfate in vegetarians versus omnivores
    • [25] Patel, K.P., Luo, F.J.G., Plummer, N.S., Hostetter, T.H., Meyer, T.W., The production of p-Cresol sulfate and indoxyl sulfate in vegetarians versus omnivores. Clin. J. Am. Soc. Nephrol. 7:6 (2012), 982–988.
    • (2012) Clin. J. Am. Soc. Nephrol. , vol.7 , Issue.6 , pp. 982-988
    • Patel, K.P.1    Luo, F.J.G.2    Plummer, N.S.3    Hostetter, T.H.4    Meyer, T.W.5
  • 27
    • 31544458910 scopus 로고    scopus 로고
    • Amino acids and muscle loss with aging
    • [27] Fujita, S., Volpi, E., Amino acids and muscle loss with aging. J. Nutr. 136:1 (2006), 277S–280S.
    • (2006) J. Nutr. , vol.136 , Issue.1 , pp. 277S-280S
    • Fujita, S.1    Volpi, E.2
  • 28
    • 33644772497 scopus 로고    scopus 로고
    • Involvement of PPARgamma in oxidative stress-mediated prostaglandin E(2) production in SZ95 human sebaceous gland cells
    • [28] Zhang, Q., Seltmann, H., Zouboulis, C.C., Konger, R.L., Involvement of PPARgamma in oxidative stress-mediated prostaglandin E(2) production in SZ95 human sebaceous gland cells. J. Invest. Dermatol. 126:1 (2006), 42–48.
    • (2006) J. Invest. Dermatol. , vol.126 , Issue.1 , pp. 42-48
    • Zhang, Q.1    Seltmann, H.2    Zouboulis, C.C.3    Konger, R.L.4
  • 29
    • 0026637299 scopus 로고
    • CD2 triggering stimulates the formation of platelet-activating factor-acether from alkyl-arachidonoyl-glycerophosphocholine in a human CD4+ T lymphocyte clone
    • [29] Le Gouvello, S., Vivier, E., Debre, P., Thomas, Y., Colard, O., CD2 triggering stimulates the formation of platelet-activating factor-acether from alkyl-arachidonoyl-glycerophosphocholine in a human CD4+ T lymphocyte clone. J. Immunol. (Baltimore, Md. : 1950) 149:4 (1992), 1289–1293.
    • (1992) J. Immunol. (Baltimore, Md. : 1950) , vol.149 , Issue.4 , pp. 1289-1293
    • Le Gouvello, S.1    Vivier, E.2    Debre, P.3    Thomas, Y.4    Colard, O.5
  • 30
    • 84879773580 scopus 로고    scopus 로고
    • Gene-metabolite expression in blood can discriminate allergen-induced isolated early from dual asthmatic responses
    • [30] Singh, A., Yamamoto, M., Kam, S.H.Y., Ruan, J., Gauvreau, G.M., O'Byrne, P.M., Tebbutt, S.J., Gene-metabolite expression in blood can discriminate allergen-induced isolated early from dual asthmatic responses. PLoS One, 8(7), 2013.
    • (2013) PLoS One , vol.8 , Issue.7
    • Singh, A.1    Yamamoto, M.2    Kam, S.H.Y.3    Ruan, J.4    Gauvreau, G.M.5    O'Byrne, P.M.6    Tebbutt, S.J.7
  • 31
    • 0025274345 scopus 로고
    • Valine, isoleucine, and leucine: a new treatment for phenylketonuria
    • [31] Berry, H.K., Brunner, R.L., Hunt, M.M., White, P.P., Valine, isoleucine, and leucine: a new treatment for phenylketonuria. Am. J. Dis. Child. 144:5 (1990), 539–543.
    • (1990) Am. J. Dis. Child. , vol.144 , Issue.5 , pp. 539-543
    • Berry, H.K.1    Brunner, R.L.2    Hunt, M.M.3    White, P.P.4
  • 32
    • 0032801136 scopus 로고    scopus 로고
    • Leucine supplementation and intensive training
    • [32] Mero, A., Leucine supplementation and intensive training. Sports Med. 27:6 (1999), 347–358.
    • (1999) Sports Med. , vol.27 , Issue.6 , pp. 347-358
    • Mero, A.1
  • 33
    • 84964700470 scopus 로고    scopus 로고
    • Long-chain aliphatic polymers to bridge the gap between semicrystalline polyolefins and traditional polycondensates
    • [33] Stempfle, F., Ortmann, P., Mecking, S., Long-chain aliphatic polymers to bridge the gap between semicrystalline polyolefins and traditional polycondensates. Chem. Rev. 116:7 (2016), 4597–4641.
    • (2016) Chem. Rev. , vol.116 , Issue.7 , pp. 4597-4641
    • Stempfle, F.1    Ortmann, P.2    Mecking, S.3
  • 34
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • [34] Vidal, M., Cusick, M.E., Barabasi, A., Interactome networks and human disease. Cell 144:6 (2011), 986–998.
    • (2011) Cell , vol.144 , Issue.6 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabasi, A.3
  • 35
    • 34247623628 scopus 로고    scopus 로고
    • Getting connected: analysis and principles of biological networks
    • [35] Zhu, X., Gerstein, M., Snyder, M., Getting connected: analysis and principles of biological networks. Genes Dev. 21:9 (2007), 1010–1024.
    • (2007) Genes Dev. , vol.21 , Issue.9 , pp. 1010-1024
    • Zhu, X.1    Gerstein, M.2    Snyder, M.3


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