Characterization of severe acute respiratory syndrome coronavirus genomes in Taiwan: Molecular epidemiology and genome evolution

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 8, 2004, Pages 2542-2547

  Yeh, Shiou Hwei ^a,b   Wang, Hurng Yi ^c   Tsai, Ching Yi ^b   Kao, Chuan Liang ^d,g   Yang, Jyh Yuan ^e   Liu, Hwan Wun ^f   Su, Ih Jen ^e   Tsai, Shih Feng ^a   Chen, Ding Shinn ^b,g   Chen, Pei Jer ^b,g   Lee, Yuan Teh ^b   Teng, Che Ming ^g   Yang, Pan Chyr ^g   Ho, Hong Nerng ^b   Chang, Ming Fu ^g   Wang, Jin Town ^g   Chang, Shan Chwen ^g   Wang, Wei Kung ^g   Hsiao, Cheng Hsiang ^g   Hsueh, Po Ren ^g  

^a NATIONAL HEALTH RESEARCH INSTITUTES   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY HOSPITAL   (Taiwan)

^c INSTITUTE OF MOLECULAR BIOLOGY   (Taiwan)

^d NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^e CENTER FOR DISEASE CONTROL   (Taiwan)

^f NATIONAL DEFENSE MEDICAL CENTER   (Taiwan)

^g NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHINA; CLINICAL ARTICLE; EPIDEMIC; EVOLUTION; GENE MUTATION; HONG KONG; HOSPITAL INFECTION; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA VIRUS; SARS CORONAVIRUS; SEQUENCE ANALYSIS; SEVERE ACUTE RESPIRATORY SYNDROME; TAIWAN; VIRUS GENOME; VIRUS TRANSMISSION;

CORONAVIRUS; RNA VIRUSES; SARS CORONAVIRUS; SARS COV;

EID: 84984548144     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0307904100     Document Type: Article

References (39)

1. Lee, N., Hui, D., Wu, A., Chan, P., Cameron, P., Joynt, G. M., Ahuja, A., Yung, M. Y., Leung, C. B., To, K. F., et al. (2003) N. Engl. J. Med. 348, 1986-1994.
2. Tsang, K. W., Ho, P. L., Ooi, G. C., Yee, W. K., Wang, T., Chan-Yeung, M., Lam, W. K., Seto, W. H., Yam, L. Y., Cheung, T. M., et al. (2003) N. Engl. J. Med. 348, 1977-1985.
3. Poutanen, S. M., Low, D. E., Henry, B., Finkelstein, S., Rose, D., Green, K., Tellier, R., Draker, R., Adachi, D., Ayers, M., et al. (2003) N. Engl. J. Med. 348, 1995-2005.
4. Parry, J. (2003) BMJ 326, 999.
5. Drosten, C., Gunther, S., Preiser, W., van der Werf, S., Brodt, H. R., Becker, S., Rabenau, H., Panning, M., Kolesnikova, L., Fouchier, R. A., et al. (2003) N. Engl. J. Med. 348, 1967-1976.
6. Ksiazek, T. G., Erdman, D., Goldsmith, C. S., Zaki, S. R., Peret, T., Emery, S., Tong, S., Urbani, C., Comer, J. A., Lim, W., et al. (2003) N. Engl. J. Med. 348, 1953-1966.
7. Peiris, J. S., Lai, S. T., Poon, L. L., Guan, Y., Yam, L. Y., Lim, W., Nicholls, J., Yee, W. K., Yan, W. W., Cheung, M. T., et al. (2003) Lancet 361, 1319-1325.
8. Marra, M. A., Jones, S. J., Astell, C. R., Holt, R. A., Brooks-Wilson, A., Butterfield, Y. S., Khattra, J., Asano, J. K., Barber, S. A., Chan, S. Y., et al. (2003) Science 300, 1399-1404.
9. Rota, P. A., Oberste, M. S., Monroe, S. S., Nix, W. A., Campagnoli, R., Icenogle, J. P., Penaranda, S., Bankamp, B., Maher, K., Chen, M. H., et al. (2003) Science 300, 1394-1399.
10. Lai, M. M. C., Holmes, K. V. (2001) in Coronaviridae: The Viruses and Their Replication, eds. Knipe D. M. & Howley P. M. (Lippincott Williams & Wilkins, London), pp. 1163-1186.
11. Ruan, Y. J., Wei, C. L., Ee, A. L., Vega, V. B., Thoreau, H., Su, S. T., Chia, J. M., Ng, P., Chiu, K. P., Lim, L., et al. (2003) Lancet 361, 1779-1785.
12. Tsui, S. K., Chim, S. S. & Lo, Y. M. (2003) N. Engl. J. Med. 349, 187-188.
13. Hsueh, P. R., Hsiao, C. H., Yeh, S. H., Wang, W. K., Chen, P. J., Wang, J. T., Chang, S. C., Kao, C. L. & Yang, P. C. (2003) J. Emerging Infect. Dis. 9, 1163-1167.
14. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680.
15. Saitou, N. & Nei, M. (1987) Mol. Biol. Evol. 4, 406-425.
16. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001) Bioinformatics 17, 1244-1245.
17. Li, W. H. (1993) J. Mol. Evol. 36, 96-99.
18. Guan, Y., Zheng, B. J., He, Y. Q., Liu, X. L., Zhuang, Z. X., Cheung, C. L., Luo, S. W., Li, P. H., Zhang, L. J., Guan, Y. J., et al. (2003) Science 302, 276-278.
19. Tajima, F. (1989) Genetics 123, 585-595.
20. Fu, Y. X. & Li, W. H. (1993) Genetics 133, 693-709.
21. Fay, J. C. & Wu, C. I. (2000) Genetics 155, 1405-1413.
22. Rozas, J. & Rozas, R. (1999) Bioinformatics 15, 174-175.
23. Li, W.-H. (1997) in Molecular Evolution (Sinauer, Sunderland, MA).
24. Hughes, A. L. & Nei, M. (1988) Nature 335, 167-170.
25. Wyckoff, G. J., Wang, W. & Wu, C. I. (2000) Nature 403, 304-309.
26. Yang, Z. & Bielawski, J. P. (2000) Trends Ecol. Evol. 15, 496-503.
27. Swanson, W. J., Clark, A. G., Waldrip-Dail, H. M., Wolfner, M. F. & Aquadro, C. F. (2001) Proc. Natl. Acad. Sci. USA 98, 7375-7379.
28. Wang, H. Y., Tang, H., Shen, C.-K. J. & Wu, C. I. (2003) Mol. Biol. Evol. 20, 1795-1804.
29. Ewen, W. J. (1979) in Mathematical Population Genetics (Springer, Berlin).
30. Rogers, A. R. & Harpending, H. (1992) Mol. Biol. Evol. 9, 552-569.
31. Drake, J. W. & Holland, J. J. (1999) Proc. Natl. Acad. Sci. USA 96, 13910-13913.
32. Collins, A. R., Knobler, R. L., Powell, H. & Buchmeier, M. J. (1982) Virology 119, 358-371.
33. De Groot, R. J., Van Leen, R. W., Dalderup, M. J., Vennema, H., Horzinek, M. C. & Spaan, W. J. (1989) Virology 171, 493-502.
34. Jimenez, G., Correa, I., Melgosa, M. P., Bullido, M. J. & Enjuanes, L. (1986) J. Virol. 60, 131-139.
35. La Monica, N., Banner, L. R., Morris, V. L. & Lai, M. M. (1991) Virology 182, 883-888.
36. Rogers, A. R. & Jorde, L. B. (1995) Hum. Biol. 67, 1-36.
37. Peiris, J. S. M., Chu, C. M., Cheng, V. C. C., Chan, K. S., Hung, I. F. N., Poon, L. L. M., Law, K. I., Tang, B. S. F., Hon, T. Y. W., Chan, C. S., et al. (2003) Lancet 361, 1767-1772.
38. Hirano, N., Fujiwara, K. & Matumoto, M. (1976) Jpn. J. Microbiol. 20, 219-225.
39. Watterson, G. A. (1975) Theor. Popul. Biol. 7, 256-276.