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Volumn 43, Issue 21, 2015, Pages

Blocking of targeted microRNAs from next-generation sequencing libraries

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 16 5P; UNCLASSIFIED DRUG; MIRN16 MICRORNA, HUMAN;

EID: 84983741968     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv724     Document Type: Article
Times cited : (18)

References (44)
  • 1
    • 77957664647 scopus 로고    scopus 로고
    • MicroRNAs as regulators of differentiation and cell fate decisions
    • Ivey, K.N. and Srivastava, D. (2010) MicroRNAs as regulators of differentiation and cell fate decisions. Cell Stem Cell, 7, 36-41.
    • (2010) Cell Stem Cell , vol.7 , pp. 36-41
    • Ivey, K.N.1    Srivastava, D.2
  • 2
    • 79958207254 scopus 로고    scopus 로고
    • MicroRNAs: New players in the DNA damage response
    • Hu, H. and Gatti, R. a. (2011) MicroRNAs: new players in the DNA damage response. J. Mol. Cell Biol., 3, 151-158.
    • (2011) J. Mol. Cell Biol. , vol.3 , pp. 151-158
    • Hu, H.1    Gatti, R.A.2
  • 3
    • 34548814135 scopus 로고    scopus 로고
    • MicroRNAs and cell cycle regulation
    • Carleton, M., Cleary, M.A. and Linsley, P.S. (2007) MicroRNAs and cell cycle regulation. Cell Cycle, 6, 2127-2132.
    • (2007) Cell Cycle , vol.6 , pp. 2127-2132
    • Carleton, M.1    Cleary, M.A.2    Linsley, P.S.3
  • 4
    • 84877766936 scopus 로고    scopus 로고
    • Molecular mechanisms of RNA interference
    • Wilson, R.C. and Doudna, J.A. (2013) Molecular mechanisms of RNA interference. Annu. Rev. Biophys., 42, 217-239.
    • (2013) Annu. Rev. Biophys. , vol.42 , pp. 217-239
    • Wilson, R.C.1    Doudna, J.A.2
  • 7
    • 84883488437 scopus 로고    scopus 로고
    • MicroRNAs and metabolism crosstalk in energy homeostasis
    • Dumortier, O., Hinault, C. and Van Obberghen, E. (2013) MicroRNAs and metabolism crosstalk in energy homeostasis. Cell Metab., 18, 312-324.
    • (2013) Cell Metab. , vol.18 , pp. 312-324
    • Dumortier, O.1    Hinault, C.2    Van Obberghen, E.3
  • 8
    • 84922465151 scopus 로고    scopus 로고
    • MiR-214 regulates the pathogenesis of patients with coronary artery disease by targeting VEGF
    • Jin, Y., Yang, C.-J., Xu, X., Cao, J.-N., Feng, Q.-T. and Yang, J. (2015) MiR-214 regulates the pathogenesis of patients with coronary artery disease by targeting VEGF. Mol. Cell. Biochem., 402, 111-122.
    • (2015) Mol. Cell. Biochem. , vol.402 , pp. 111-122
    • Jin, Y.1    Yang, C.-J.2    Xu, X.3    Cao, J.-N.4    Feng, Q.-T.5    Yang, J.6
  • 10
    • 79955671859 scopus 로고    scopus 로고
    • Differential miRNA expression in omental adipose tissue and in the circulation of obese patients identifies novel metabolic biomarkers
    • Heneghan, H.M., Miller, N., McAnena, O.J., O'Brien, T. and Kerin, M.J. (2011) Differential miRNA expression in omental adipose tissue and in the circulation of obese patients identifies novel metabolic biomarkers. J. Clin. Endocrinol. Metab., 96, 846-850.
    • (2011) J. Clin. Endocrinol. Metab. , vol.96 , pp. 846-850
    • Heneghan, H.M.1    Miller, N.2    McAnena, O.J.3    O'Brien, T.4    Kerin, M.J.5
  • 11
    • 84881298463 scopus 로고    scopus 로고
    • Stability of miRNA in human urine supports its biomarker potential
    • Mall, C., Rocke, D.M., Durbin-Johnson, B. and Weiss, R.H. (2013) Stability of miRNA in human urine supports its biomarker potential. Biomark Med., 7, 1-17.
    • (2013) Biomark Med. , vol.7 , pp. 1-17
    • Mall, C.1    Rocke, D.M.2    Durbin-Johnson, B.3    Weiss, R.H.4
  • 12
    • 78149409316 scopus 로고    scopus 로고
    • Export of microRNAs and microRNA-protective protein by mammalian cells
    • Wang, K., Zhang, S., Weber, J., Baxter, D. and Galas, D.J. (2010) Export of microRNAs and microRNA-protective protein by mammalian cells. Nucleic Acids Res., 38, 7248-7259.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 7248-7259
    • Wang, K.1    Zhang, S.2    Weber, J.3    Baxter, D.4    Galas, D.J.5
  • 17
    • 84912088844 scopus 로고    scopus 로고
    • DNA methylation and microrna biomarkers for noninvasive detection of gastric and colorectal cancer
    • Toiyama, Y., Okugawa, Y. and Goel, A. (2014) DNA methylation and microrna biomarkers for noninvasive detection of gastric and colorectal cancer. Biochem. Biophys. Res. Commun., 455, 43-57.
    • (2014) Biochem. Biophys. Res. Commun. , vol.455 , pp. 43-57
    • Toiyama, Y.1    Okugawa, Y.2    Goel, A.3
  • 18
    • 84907409966 scopus 로고    scopus 로고
    • The expression of microRNA-375 in plasma and tissue is matched in human colorectal cancer
    • Xu, L., Li, M., Wang, M., Yan, D., Feng, G. and An, G. (2014) The expression of microRNA-375 in plasma and tissue is matched in human colorectal cancer. BMC Cancer, 14, 714.
    • (2014) BMC Cancer , vol.14 , pp. 714
    • Xu, L.1    Li, M.2    Wang, M.3    Yan, D.4    Feng, G.5    An, G.6
  • 20
    • 77649138141 scopus 로고    scopus 로고
    • Circulating microRNAs as novel minimally invasive biomarkers for breast cancer
    • Heneghan, H.M., Miller, N., Lowery, A.J., Sweeney, K.J., Newell, J. and Kerin, M.J. (2010) Circulating microRNAs as novel minimally invasive biomarkers for breast cancer. Ann. Surg., 251, 499-505.
    • (2010) Ann. Surg. , vol.251 , pp. 499-505
    • Heneghan, H.M.1    Miller, N.2    Lowery, A.J.3    Sweeney, K.J.4    Newell, J.5    Kerin, M.J.6
  • 25
    • 79953301730 scopus 로고    scopus 로고
    • MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins
    • Vickers, K.C., Palmisano, B.T., Shoucri, B.M., Shamburek, R.D. and Remaley, A.T. (2011) MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins. Nat. Cell Biol., 13, 423-433.
    • (2011) Nat. Cell Biol. , vol.13 , pp. 423-433
    • Vickers, K.C.1    Palmisano, B.T.2    Shoucri, B.M.3    Shamburek, R.D.4    Remaley, A.T.5
  • 27
    • 50849100742 scopus 로고    scopus 로고
    • Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation
    • Vigneault, F., Sismour, a M. and Church, G.M. (2008) Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation. Nat. Methods, 5, 777-779.
    • (2008) Nat. Methods , vol.5 , pp. 777-779
    • Vigneault, F.1    Sismour, A.M.2    Church, G.M.3
  • 31
    • 84885008898 scopus 로고    scopus 로고
    • High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing
    • Zhang, Z., Lee, J.E., Riemondy, K., Anderson, E.M. and Yi, R. (2013) High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing. Genome Biol., 14, R109.
    • (2013) Genome Biol. , vol.14 , pp. R109
    • Zhang, Z.1    Lee, J.E.2    Riemondy, K.3    Anderson, E.M.4    Yi, R.5
  • 33
    • 84913534500 scopus 로고    scopus 로고
    • Technical factors involved in the measurement of circulating microRNA biomarkers for the detection of colorectal neoplasia
    • Yamada, A., Cox, M. a., Gaffney, K. a., Moreland, A., Boland, C.R. and Goel, A. (2014) Technical factors involved in the measurement of circulating microRNA biomarkers for the detection of colorectal neoplasia. PLoS One, 9, e112481.
    • (2014) PLoS One , vol.9 , pp. e112481
    • Yamada, A.1    Cox, M.A.2    Gaffney, K.A.3    Moreland, A.4    Boland, C.R.5    Goel, A.6
  • 34
    • 84875033024 scopus 로고    scopus 로고
    • Comprehensive profiling of circulating microRNA via small RNA sequencing of cDNA libraries reveals biomarker potential and limitations
    • Williams, Z., Ben-Dov, I.Z., Elias, R., Mihailovic, A., Brown, M., Rosenwaks, Z. and Tuschl, T. (2013) Comprehensive profiling of circulating microRNA via small RNA sequencing of cDNA libraries reveals biomarker potential and limitations. Proc. Natl. Acad. Sci. U.S.A., 110, 4255-4260.
    • (2013) Proc. Natl. Acad. Sci. U.S.A. , vol.110 , pp. 4255-4260
    • Williams, Z.1    Ben-Dov, I.Z.2    Elias, R.3    Mihailovic, A.4    Brown, M.5    Rosenwaks, Z.6    Tuschl, T.7
  • 35
    • 84874608829 scopus 로고    scopus 로고
    • Dampening enthusiasm for circulating microRNA in breast cancer
    • Leidner, R.S., Li, L. and Thompson, C.L. (2013) Dampening enthusiasm for circulating microRNA in breast cancer. PLoS One, 8, 1-11.
    • (2013) PLoS One , vol.8 , pp. 1-11
    • Leidner, R.S.1    Li, L.2    Thompson, C.L.3
  • 36
    • 84920509010 scopus 로고    scopus 로고
    • Circulating microRNA biomarker studies: Pitfalls and potential solutions
    • Witwer, K.W. (2014) Circulating microRNA biomarker studies: pitfalls and potential solutions. Clin. Chem., 61, 56-63.
    • (2014) Clin. Chem. , vol.61 , pp. 56-63
    • Witwer, K.W.1
  • 37
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin, M. (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal, 17, 10-12.
    • (2011) EMBnet.journal , vol.17 , pp. 10-12
    • Martin, M.1
  • 38
    • 84891818318 scopus 로고    scopus 로고
    • MiRBase: Annotating high confidence microRNAs using deep sequencing data
    • Kozomara, A. and Griffiths-Jones, S. (2014) MiRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res., 42, 68-73.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 68-73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 39
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. and Salzberg, S.L. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9, 357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 40
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 41
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
    • (2010) Genome Biol. , vol.11 , pp. R106
    • Anders, S.1    Huber, W.2
  • 42
    • 80052527459 scopus 로고    scopus 로고
    • Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
    • Wyman, S.K., Knouf, E.C., Parkin, R.K., Fritz, B.R., Lin, D.W., Dennis, L.M., Krouse, M. a., Webster, P.J. and Tewari, M. (2011) Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. Genome Res., 21, 1450-1461.
    • (2011) Genome Res. , vol.21 , pp. 1450-1461
    • Wyman, S.K.1    Knouf, E.C.2    Parkin, R.K.3    Fritz, B.R.4    Lin, D.W.5    Dennis, L.M.6    Krouse, M.A.7    Webster, P.J.8    Tewari, M.9
  • 43
    • 80053208703 scopus 로고    scopus 로고
    • Deep sequencing of microRNA precursors reveals extensive 3′ end modification
    • Newman, M.A., Mani, V. and Hammond, S.M. (2011) Deep sequencing of microRNA precursors reveals extensive 3′ end modification. RNA, 17, 1795-1803.
    • (2011) RNA , vol.17 , pp. 1795-1803
    • Newman, M.A.1    Mani, V.2    Hammond, S.M.3
  • 44
    • 0024297824 scopus 로고
    • A ligase-mediated gene detection technique
    • Landegren, U., Kaiser, R., Sanders, J. and Hood, L. (1988) A ligase-mediated gene detection technique. Science, 241, 1077-1080.
    • (1988) Science , vol.241 , pp. 1077-1080
    • Landegren, U.1    Kaiser, R.2    Sanders, J.3    Hood, L.4


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