-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006.0008.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 2006.0008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
-
2
-
-
23744504984
-
Recognition of antimicrobial peptides by a bacterial sensor kinase
-
Bader, M.W., Sanowar, S., Daley, M.E., Schneider, A.R., Cho, U., Xu, W., et al. (2005) Recognition of antimicrobial peptides by a bacterial sensor kinase. Cell 122: 461–472.
-
(2005)
Cell
, vol.122
, pp. 461-472
-
-
Bader, M.W.1
Sanowar, S.2
Daley, M.E.3
Schneider, A.R.4
Cho, U.5
Xu, W.6
-
3
-
-
84871016428
-
Evolution of two-component signal transduction systems
-
Capra, E.J., and Laub, M.T. (2012) Evolution of two-component signal transduction systems. Annu Rev Microbiol 66: 325–347.
-
(2012)
Annu Rev Microbiol
, vol.66
, pp. 325-347
-
-
Capra, E.J.1
Laub, M.T.2
-
4
-
-
84884513953
-
The biology of the PmrA/PmrB two-component system: the major regulator of lipopolysaccharide modifications
-
Chen, H.D., and Groisman, E.A. (2013) The biology of the PmrA/PmrB two-component system: the major regulator of lipopolysaccharide modifications. Annu Rev Microbiol 67: 83–112.
-
(2013)
Annu Rev Microbiol
, vol.67
, pp. 83-112
-
-
Chen, H.D.1
Groisman, E.A.2
-
5
-
-
32044465772
-
Metal bridges between the PhoQ sensor domain and the membrane regulate transmembrane signaling
-
Cho, U.S., Bader, M.W., Amaya, M.F., Daley, M.E., Klevit, R.E., Miller, S.I., and Xu, W. (2006) Metal bridges between the PhoQ sensor domain and the membrane regulate transmembrane signaling. J Mol Biol 356: 1193–1206.
-
(2006)
J Mol Biol
, vol.356
, pp. 1193-1206
-
-
Cho, U.S.1
Bader, M.W.2
Amaya, M.F.3
Daley, M.E.4
Klevit, R.E.5
Miller, S.I.6
Xu, W.7
-
6
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K.A., and Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97: 6640–6645.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
7
-
-
36749059574
-
B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli
-
Eguchi, Y., Itou, J., Yamane, M., Demizu, R., Yamato, F., Okada, A., et al. (2007) B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli. Proc Natl Acad Sci USA 104: 18712–18717.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 18712-18717
-
-
Eguchi, Y.1
Itou, J.2
Yamane, M.3
Demizu, R.4
Yamato, F.5
Okada, A.6
-
8
-
-
84863596935
-
The connector SafA interacts with the multi-sensing domain of PhoQ in Escherichia coli
-
Eguchi, Y., Ishii, E., Yamane, M., and Utsumi, R. (2012) The connector SafA interacts with the multi-sensing domain of PhoQ in Escherichia coli. Mol Microbiol 85: 299–313.
-
(2012)
Mol Microbiol
, vol.85
, pp. 299-313
-
-
Eguchi, Y.1
Ishii, E.2
Yamane, M.3
Utsumi, R.4
-
9
-
-
70349541000
-
Biological insights from structures of two-component proteins
-
Gao, R., and Stock, A.M. (2009) Biological insights from structures of two-component proteins. Annu Rev Microbiol 63: 133–154.
-
(2009)
Annu Rev Microbiol
, vol.63
, pp. 133-154
-
-
Gao, R.1
Stock, A.M.2
-
10
-
-
84872202837
-
Probing kinase and phosphatase activities of two-component systems in vivo with concentration-dependent phosphorylation profiling
-
Gao, R., and Stock, A.M. (2013a) Probing kinase and phosphatase activities of two-component systems in vivo with concentration-dependent phosphorylation profiling. Proc Natl Acad Sci USA 110: 672–677.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 672-677
-
-
Gao, R.1
Stock, A.M.2
-
11
-
-
84887290490
-
Evolutionary tuning of protein expression levels of a positively autoregulated two-component system
-
Gao, R., and Stock, A.M. (2013b) Evolutionary tuning of protein expression levels of a positively autoregulated two-component system. PLoS Genet 9: e1003927.
-
(2013)
PLoS Genet
, vol.9
-
-
Gao, R.1
Stock, A.M.2
-
12
-
-
77949916347
-
Two-component signaling circuit structure and properties
-
Goulian, M. (2010) Two-component signaling circuit structure and properties. Curr Opin Microbiol 13: 184–189.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 184-189
-
-
Goulian, M.1
-
13
-
-
0035105303
-
The pleiotropic two-component regulatory system PhoP-PhoQ
-
Groisman, E.A. (2001) The pleiotropic two-component regulatory system PhoP-PhoQ. J Bacteriol 183: 1835–1842.
-
(2001)
J Bacteriol
, vol.183
, pp. 1835-1842
-
-
Groisman, E.A.1
-
14
-
-
0035682064
-
Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria
-
Haldimann, A., and Wanner, B.L. (2001) Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria. J Bacteriol 183: 6384–6393.
-
(2001)
J Bacteriol
, vol.183
, pp. 6384-6393
-
-
Haldimann, A.1
Wanner, B.L.2
-
15
-
-
0031782823
-
Mutations that alter the kinase and phosphatase activities of the two-component sensor EnvZ
-
Hsing, W., Russo, F.D., Bernd, K.K., and Silhavy, T.J. (1998) Mutations that alter the kinase and phosphatase activities of the two-component sensor EnvZ. J Bacteriol 180: 4538–4546.
-
(1998)
J Bacteriol
, vol.180
, pp. 4538-4546
-
-
Hsing, W.1
Russo, F.D.2
Bernd, K.K.3
Silhavy, T.J.4
-
16
-
-
33645050677
-
The vancomycin resistance VanRS two-component signal transduction system of Streptomyces coelicolor
-
Hutchings, M.I., Hong, H.J., and Buttner, M.J. (2006) The vancomycin resistance VanRS two-component signal transduction system of Streptomyces coelicolor. Mol Microbiol 59: 923–935.
-
(2006)
Mol Microbiol
, vol.59
, pp. 923-935
-
-
Hutchings, M.I.1
Hong, H.J.2
Buttner, M.J.3
-
17
-
-
78650506427
-
Conserved mechanism for sensor phosphatase control of two-component signaling revealed in the nitrate sensor NarX
-
Huynh, T.N., Noriega, C.E., and Stewart, V. (2010) Conserved mechanism for sensor phosphatase control of two-component signaling revealed in the nitrate sensor NarX. Proc Natl Acad Sci USA 107: 21140–21145.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 21140-21145
-
-
Huynh, T.N.1
Noriega, C.E.2
Stewart, V.3
-
18
-
-
0024759933
-
Phosphorylation and dephosphorylation of a bacterial transcriptional activator by a transmembrane receptor
-
Igo, M.M., Ninfa, A.J., Stock, J.B., and Silhavy, T.J. (1989) Phosphorylation and dephosphorylation of a bacterial transcriptional activator by a transmembrane receptor. Genes Dev 3: 1725–1734.
-
(1989)
Genes Dev
, vol.3
, pp. 1725-1734
-
-
Igo, M.M.1
Ninfa, A.J.2
Stock, J.B.3
Silhavy, T.J.4
-
19
-
-
79956128448
-
Kinetic study of de novo chromophore maturation of fluorescent proteins
-
Iizuka, R., Yamagishi-Shirasaki, M., and Funatsu, T. (2011) Kinetic study of de novo chromophore maturation of fluorescent proteins. Anal Biochem 414: 173–178.
-
(2011)
Anal Biochem
, vol.414
, pp. 173-178
-
-
Iizuka, R.1
Yamagishi-Shirasaki, M.2
Funatsu, T.3
-
20
-
-
84878805541
-
Mechanism of activation of PhoQ/PhoP two-component signal transduction by SafA, an auxiliary protein of PhoQ histidine kinase in Escherichia coli
-
Ishii, E., Eguchi, Y., and Utsumi, R. (2013) Mechanism of activation of PhoQ/PhoP two-component signal transduction by SafA, an auxiliary protein of PhoQ histidine kinase in Escherichia coli. Biosci Biotechnol Biochem 77: 814–819.
-
(2013)
Biosci Biotechnol Biochem
, vol.77
, pp. 814-819
-
-
Ishii, E.1
Eguchi, Y.2
Utsumi, R.3
-
21
-
-
55949084011
-
The PhoQ/PhoP regulatory network of Salmonella enterica
-
In, Utsumi, R., (ed)., New York, Springer
-
Kato, A., and Groisman, E.A. (2008) The PhoQ/PhoP regulatory network of Salmonella enterica. In Bacterial Signal Transduction: Networks and Drug Targets. Utsumi, R. (ed). New York: Springer, pp. 7–21.
-
(2008)
Bacterial Signal Transduction: Networks and Drug Targets
, pp. 7-21
-
-
Kato, A.1
Groisman, E.A.2
-
22
-
-
84856463001
-
Pulsed feedback defers cellular differentiation
-
Levine, J.H., Fontes, M.E., Dworkin, J., and Elowitz, M.B. (2012) Pulsed feedback defers cellular differentiation. PLoS Biol 10: e1001252.
-
(2012)
PLoS Biol
, vol.10
-
-
Levine, J.H.1
Fontes, M.E.2
Dworkin, J.3
Elowitz, M.B.4
-
23
-
-
74249107490
-
Feedback inhibition in the PhoQ/PhoP signaling system by a membrane peptide
-
Lippa, A.M., and Goulian, M. (2009) Feedback inhibition in the PhoQ/PhoP signaling system by a membrane peptide. PLoS Genet 5: e1000788.
-
(2009)
PLoS Genet
, vol.5
-
-
Lippa, A.M.1
Goulian, M.2
-
24
-
-
34250870249
-
[22] - Single-cell analysis of gene expression by fluorescence microscopy
-
Miyashiro, T., and Goulian, M. (2007a) [22] - Single-cell analysis of gene expression by fluorescence microscopy. Methods in Enzymology. 423: 458–475.
-
(2007)
Methods in Enzymology
, vol.423
, pp. 458-475
-
-
Miyashiro, T.1
Goulian, M.2
-
25
-
-
36049046412
-
Stimulus-dependent differential regulation in the Escherichia coli PhoQ PhoP system
-
Miyashiro, T., and Goulian, M. (2007b) Stimulus-dependent differential regulation in the Escherichia coli PhoQ PhoP system. Proc Natl Acad Sci USA 104: 16305–16310.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 16305-16310
-
-
Miyashiro, T.1
Goulian, M.2
-
26
-
-
56249126377
-
High stimulus unmasks positive feedback in an autoregulated bacterial signaling circuit
-
Miyashiro, T., and Goulian, M. (2008) High stimulus unmasks positive feedback in an autoregulated bacterial signaling circuit. Proc Natl Acad Sci USA 105: 17457–17462.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 17457-17462
-
-
Miyashiro, T.1
Goulian, M.2
-
27
-
-
63449091028
-
Evolution of a bacterial regulon controlling virulence and mg 2+ homeostasis
-
Perez, J.C., Shin, D., Zwir, I., Latifi, T., Hadley, T.J., and Groisman, E.A. (2009) Evolution of a bacterial regulon controlling virulence and mg 2+ homeostasis. PLOS Genet 5: e1000428.
-
(2009)
PLOS Genet
, vol.5
-
-
Perez, J.C.1
Shin, D.2
Zwir, I.3
Latifi, T.4
Hadley, T.J.5
Groisman, E.A.6
-
28
-
-
84922439802
-
Pervasive degeneracy and epistasis in a protein-protein interface
-
Podgornaia, A.I., and Laub, M.T. (2015) Pervasive degeneracy and epistasis in a protein-protein interface. Science 347: 673–677.
-
(2015)
Science
, vol.347
, pp. 673-677
-
-
Podgornaia, A.I.1
Laub, M.T.2
-
29
-
-
84884644680
-
The architecture of a prototypical bacterial signaling circuit enables a single point mutation to confer novel network properties
-
Ram, S., and Goulian, M. (2013) The architecture of a prototypical bacterial signaling circuit enables a single point mutation to confer novel network properties. PLoS Genet 9: e1003706.
-
(2013)
PLoS Genet
, vol.9
-
-
Ram, S.1
Goulian, M.2
-
30
-
-
77649220067
-
Adaptable functionality of transcriptional feedback in bacterial two-component systems
-
Ray, J.C.J., and Igoshin, O.A. (2010) Adaptable functionality of transcriptional feedback in bacterial two-component systems. PLoS Comput Biol 6: e1000676.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Ray, J.C.J.1
Igoshin, O.A.2
-
31
-
-
0036776781
-
Mutational analysis of the Escherichia coli PhoQ sensor kinase: differences with the Salmonella enterica serovar Typhimurium PhoQ protein and in the mechanism of Mg2+ and Ca2+ sensing
-
Regelmann, A.G., Lesley, J.A., Mott, C., Stokes, L., and Waldburger, C.D. (2002) Mutational analysis of the Escherichia coli PhoQ sensor kinase: differences with the Salmonella enterica serovar Typhimurium PhoQ protein and in the mechanism of Mg2+ and Ca2+ sensing. J Bacteriol 184: 5468–5478.
-
(2002)
J Bacteriol
, vol.184
, pp. 5468-5478
-
-
Regelmann, A.G.1
Lesley, J.A.2
Mott, C.3
Stokes, L.4
Waldburger, C.D.5
-
32
-
-
0027504131
-
The essential tension: opposed reactions in bacterial two-component regulatory systems
-
Russo, F.D., and Silhavy, T.J. (1993) The essential tension: opposed reactions in bacterial two-component regulatory systems. Trends Microbiol 1: 306–310.
-
(1993)
Trends Microbiol
, vol.1
, pp. 306-310
-
-
Russo, F.D.1
Silhavy, T.J.2
-
33
-
-
84920736174
-
Temporal and evolutionary dynamics of two-component signaling pathways
-
Salazar, M.E., and Laub, M.T. (2015) Temporal and evolutionary dynamics of two-component signaling pathways. Curr Opin Microbiol 24: 7–14.
-
(2015)
Curr Opin Microbiol
, vol.24
, pp. 7-14
-
-
Salazar, M.E.1
Laub, M.T.2
-
34
-
-
33845458915
-
A positive feedback loop promotes transcription surge that jump-starts Salmonella virulence circuit
-
Shin, D., Lee, E.J., Huang, H., and Groisman, E.A. (2006) A positive feedback loop promotes transcription surge that jump-starts Salmonella virulence circuit. Science 314: 1607–1609.
-
(2006)
Science
, vol.314
, pp. 1607-1609
-
-
Shin, D.1
Lee, E.J.2
Huang, H.3
Groisman, E.A.4
-
35
-
-
52649164147
-
Cross-talk suppression between the CpxA–CpxR and EnvZ–OmpR two-component systems in E. coli
-
Siryaporn, A., and Goulian, M. (2008) Cross-talk suppression between the CpxA–CpxR and EnvZ–OmpR two-component systems in E. coli. Mol Microbiol 70: 494–506.
-
(2008)
Mol Microbiol
, vol.70
, pp. 494-506
-
-
Siryaporn, A.1
Goulian, M.2
-
36
-
-
26444481955
-
Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis
-
Skerker, J.M., Prasol, M.S., Perchuk, B.S., Biondi, E.G., and Laub, M.T. (2005) Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis. PLoS Biol 3: e334.
-
(2005)
PLoS Biol
, vol.3
-
-
Skerker, J.M.1
Prasol, M.S.2
Perchuk, B.S.3
Biondi, E.G.4
Laub, M.T.5
-
37
-
-
44649153450
-
Rewiring the specificity of two-component signal transduction systems
-
Skerker, J.M., Perchuk, B.S., Siryaporn, A., Lubin, E.A., Ashenberg, O., Goulian, M., and Laub, M.T. (2008) Rewiring the specificity of two-component signal transduction systems. Cell 133: 1043–1054.
-
(2008)
Cell
, vol.133
, pp. 1043-1054
-
-
Skerker, J.M.1
Perchuk, B.S.2
Siryaporn, A.3
Lubin, E.A.4
Ashenberg, O.5
Goulian, M.6
Laub, M.T.7
-
38
-
-
79955024764
-
High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics
-
Sliusarenko, O., Heinritz, J., Emonet, T., and Jacobs-Wagner, C. (2011) High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics. Mol Microbiol 80: 612–627.
-
(2011)
Mol Microbiol
, vol.80
, pp. 612-627
-
-
Sliusarenko, O.1
Heinritz, J.2
Emonet, T.3
Jacobs-Wagner, C.4
-
39
-
-
84902163304
-
Small proteins can no longer be ignored
-
Storz, G., Wolf, Y.I., and Ramamurthi, K.S. (2014) Small proteins can no longer be ignored. Annu Rev Biochem 83: 753–777.
-
(2014)
Annu Rev Biochem
, vol.83
, pp. 753-777
-
-
Storz, G.1
Wolf, Y.I.2
Ramamurthi, K.S.3
-
40
-
-
24944583149
-
Transcriptional response of Escherichia coli to external zinc
-
Yamamoto, K., and Ishihama, A. (2005) Transcriptional response of Escherichia coli to external zinc. J Bacteriol 187: 6333–6340.
-
(2005)
J Bacteriol
, vol.187
, pp. 6333-6340
-
-
Yamamoto, K.1
Ishihama, A.2
-
41
-
-
84859072898
-
Intrinsic negative feedback governs activation surge in two-component regulatory systems
-
Yeo, W.S., Zwir, I., Huang, H.V., Shin, D., Kato, A., and Groisman, E.A. (2012) Intrinsic negative feedback governs activation surge in two-component regulatory systems. Mol Cell 45: 409–421.
-
(2012)
Mol Cell
, vol.45
, pp. 409-421
-
-
Yeo, W.S.1
Zwir, I.2
Huang, H.V.3
Shin, D.4
Kato, A.5
Groisman, E.A.6
-
42
-
-
84908441260
-
Bacterial nucleoid-associated protein uncouples transcription levels from transcription timing
-
Zwir, I., Yeo, W.S., Shin, D., Latifi, T., Huang, H., and Groisman, E.A. (2014) Bacterial nucleoid-associated protein uncouples transcription levels from transcription timing. mBio 5: 14–e01485.
-
(2014)
mBio
, vol.5
, pp. 14-1485
-
-
Zwir, I.1
Yeo, W.S.2
Shin, D.3
Latifi, T.4
Huang, H.5
Groisman, E.A.6
|