Are there true cosmopolitan sipunculan worms? A genetic variation study within Phascolosoma perlucens (Sipuncula, Phascolosomatidae)

Marine Biology

Volumn 157, Issue 7, 2010, Pages 1417-1431

  Kawauchi, Gisele Y ^a   Giribet, Gonzalo ^a  

^a HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME ACTIVITY; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC VARIATION; INTERTIDAL ENVIRONMENT; INVERTEBRATE; MORPHOLOGY; PHYLOGENETICS; POPULATION STRUCTURE; SPECIATION (BIOLOGY); TAXONOMY;

PHASCOLOSOMA PERLUCENS; PHASCOLOSOMATIDAE; SIPUNCULA;

EID: 84983518158     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-010-1402-z     Document Type: Article

References (84)

1. Addison JA, Hart MW (2005) Colonization, dispersal, and hybridization influence phylogeography of North Atlantic sea urchins (Strongylocentrotus droebachiensis). Evolution 59: 532-543.
2. Álvarez-Padilla F, Dimitrov D, Giribet G, Hormiga G (2009) Phylogenetic relationships of the spider family Tetragnathidae (Araneae, Araneoidea) based on morphological and DNA sequence data. Cladistics 25: 109-146.
3. Aron S, Solé-Cava AM (1991) Genetic evaluation of the taxonomic status of 2 varieties of the cosmopolitan ascidian Botryllus niger (Ascidiacea, Botryllidae). Biochem Syst Ecol 19: 271-276.
4. Augener H (1903) Beitrage zur Kenntnis der Gephyreen nach Untersuchung der im Gottinger zoologischen Museum befindlichen Sipunculiden und Echiuriden. Arch Natarges 69: 297-371.
5. Baird WB (1868) Monograph of the species of worms belonging to the subclass Gephyrea; with a notice of such species as are contained in the collection of the British Museum. Proc Zool Soc Lond 1868: 76-114.
6. Baker JM, Funch P, Giribet G (2007) Cryptic speciation in the recently discovered American cycliophoran Symbion americanus; genetic structure and population expansion. Mar Biol 151: 2183-2193.
7. Bleidorn C, Kruse I, Albrecht S, Bartolomaeus T (2006) Mitochondrial sequence data expose the putative cosmopolitan polychaete Scoloplos armiger (Annelida, Orbiniidae) as a species complex. BMC Evol Biol 6: 47.
8. Boury-Esnault N, Klautau M, Bezac C, Wulff J, Solé-Cava AM (1999) Comparative study of putative conspecific sponge populations from both sides of the Isthmus of Panama. J Mar Biol Assoc UK 79: 39-50.
9. Bucklin A, Kocher TD (1996) Source regions for recruitment of Calanus finmarchicus to Georges Bank: Evidence from molecular population genetic analysis of mtDNA. Deep-Sea Res Part II 43: 1665-1681.
10. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659.
11. Crandall KA (1996) Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences. Mol Biol Evol 13: 115-130.
12. Cutler EB (1965) Sipunculids of Madagascar. Extrait des cahiers ORSTOM-Oceanographie 3: 51-63.
13. Cutler EB (1994) The sipuncula: their systematics, biology and evolution. Cornell University Press, Ithaca, N. Y.
14. Cutler EB, Cutler NJ (1979) Madagascar and Indian Ocean Sipuncula. Bull Mus Natl Hist Nat, Paris 4e: 941-990.
15. Cutler EB, Cutler NJ (1990) A revision of the subgenus Phascolosoma (Sipuncula: Phascolosoma). Proc Biol Soc Wash 103: 691-730.
16. Cutler EB, Kirsteuer E (1968) Additional notes on some sipuncula from Madagascar. Results Australian Indo-West Pacific expedition, 1959-60. Part 12. Zool Anz 180: 352-356.
17. Cutler EB, Cutler NJ, Nishikawa T (1984) The sipuncula of Japan: their systematics and distribution. Publ Seto Mar Biol Lab 29: 249-322.
18. De Laet JE (2005) Parsimony and the problem of inapplicables in sequence data. In: Albert VA (ed) Parsimony, phylogeny and genomics. Oxford University Press, Oxford, pp 81-116.
19. Du X, Chen Z, Deng Y, Wang Q, Huang R (2008) Genetic diversity and population structure of the peanut worm (Sipunculus nudus) in Southern China as inferred from mitochondrial 16S rRNA sequences. Isr J Aquacul-Bamid 60: 237-242.
20. Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5: 1-19.
21. Edmonds SJ (1980) A revision of the systematics of Australian sipunculans (sipuncula). Rec S Aust Mus 18: 1-74.
22. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3. 0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1: 47-50.
23. Farris JS (1997) The future of phylogeny reconstruction. Zool Scr 26: 303-311.
24. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
25. Fischer W (1922) Westindische Gephyreen. Zool Anz 55: 10-18.
26. Fisher WK (1952) The sipunculid worms of California and Baja California. Proc US Nat Mus 102: 371-450.
27. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek RC (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mar Biol Biothechnol 3: 294-299.
28. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
29. Funk DJ, Omland KE (2003) Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu Rev Ecol Evol Syst 34: 397-423.
30. Goloboff PA (1999) Analyzing large data sets in reasonable times: Solutions for composite optima. Cladistics 15: 415-428.
31. Huber BA, Astrin JJ (2009) Increased sampling blurs morphological and molecular species limits: revision of the Hispaniolan endemic spider genus Tainonia (Araneae: Pholcidae). Invertebr Syst 23: 281-300.
32. Jolly MT, Jollivet D, Gentil F, Thiebaut E, Viard F (2005) Sharp genetic break between Atlantic and English Channel populations of the polychaete Pectinaria koreni, along the North coast of France. Heredity 94: 23-32.
33. Klautau M, Russo CAM, Lazoski C, Boury-Esnault N, Thorpe JP, Solé-Cava AM (1999) Does cosmopolitanism result from overconservative systematics? A case study using the marine sponge Chondrilla nucula. Evolution 53: 1414-1422.
34. Knowlton N (1993) Sibling species in the sea. Annu Rev Ecol Syst 24: 189-216.
35. Knowlton N (2000) Molecular genetic analyses of species boundaries in the sea. Hydrobiologia 420: 73-90.
36. Lanchester WF (1905) On the sipunculids and echiurids collected during the "Skeat" expedition to the Malay Peninsula. Proc Zool Soc Lond 1: 35-41.
37. Lessios HA, Kessing BD, Pearse JS (2001) Population structure and speciation in tropical seas: Global phylogeography of the sea urchin Diadema. Evolution 55: 955-975.
38. Marko PB (2002) Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the Isthmus of Panama. Mol Biol Evol 19: 2005-2021.
39. Mayr E, Ashlock PD (1991) Principles of systematic zoology. Mcgraw-Hill, New York, p 428.
40. McFadden CS, Grosberg RK, Cameron BB, Karlton DP, Secord D (1997) Genetic relationships within and between clonal and solitary forms of the sea anemone Anthopleura elegantissima revisited: Evidence for the existence of two species. Mar Biol 128: 127-139.
41. McGovern TM, Hellberg ME (2003) Cryptic species, cryptic endosymbionts, and geographical variation in chemical defences in the bryozoan Bugula neritina. Mol Ecol 12: 1207-1215.
42. Monro CA (1931) Polychaeta, Oligochaeta, Echiuroidea and Sipunculoidea. Sci Rep Barrier Reef Exped 4: 1037.
43. Monteiro FA, Solé-Cava AM, Thorpe JP (1997) Extensive genetic divergence between populations of the common intertidal sea anemone Actinia equina from Britain, the Mediterranean and the Cape Verde Islands. Mar Biol 129: 425-433.
44. Murina VV (1964) Report on the sipunculid worms from the coast of South Chinese Sea. Tr Inst Okeanol Akad Nauk SSSR 69: 254-270.
45. Murina VV (1967) On the sipunculid fauna of the littoral of Cuba. Zool Zh 46: 35-47.
46. Pfenninger M, Posada D (2002) Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): Fragmentation, corridor migration, and secondary contact. Evolution 56: 1776-1788.
47. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
48. Ramírez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A (2008) Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics 179: 555-567.
49. Ramos-Onsins SE, Rozas J (2002) Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19: 2092-2100.
50. Rice ME (1975) Survey of the Sipuncula of the coral and beach rock communities of the Caribbean Sea. In: Rice ME, Todorovic M (eds) Proceedings of the International Symposium of Sipuncula and Echiura. Naucno Delo Press, Belgrade, pp 35-49.
51. Rice ME (1981) Larvae adrift: patterns and problems in life histories of sipunculans. Am Zool 21: 605-619.
52. Rice ME, MacIntyre IG (1979) Distribution of Sipuncula in the coral reef community, Carrie Bow Cay, Belize. Smithson Contrib Mar Sci 12: 311-320.
53. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R (2009) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
54. Rubinoff D, Holland BS (2005) Between two extremes: Mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. Syst Biol 54: 952-961.
55. Scheltema RS (1975) The frequency of long-distance larval dispersal and the rate of genes of gene-flow between widely separated populations of sipunculans. In: Rice ME, Todorovic M (eds) Proceedings of the International Symposium on the Biology of the Sipuncula and Echiura. Kotor, Yugoslavia, pp 199-210.
56. Scheltema RS (1988) Initial evidence for the transport of teleplanic larvae of benthic invertebrates across the East Pacific Barrier. Biol Bull 174: 145-152.
57. Scheltema RS, Hall JR (1975) The dispersal of pelahosphaera larvae by ocean currents and the geographical distribution of sipunculans. In: Rice EM, Tororovic M (eds) Proceedingns of the International Symposium on the Biology of the Sipuncula and Echiura. Kotor, Yugoslavia, pp 103-115.
58. Schulze A, Cutler EB, Giribet G (2005) Reconstructing the phylogeny of the Sipuncula. Hydrobiologia 535(536): 277-296.
59. Schulze A, Cutler EB, Giribet G (2007) Phylogeny of sipunculan worms: A combined analysis of four gene regions and morphology. Mol Phylogenet Evol 42: 171-192.
60. Schwaninger HR (2008) Global mitochondrial DNA phylogeography and biogeographic history of the antitropically and longitudinally disjunct marine bryozoan Membranipora membranacea L. (Cheilostomata): Another cryptic marine sibling species complex? Mol Phylogenet Evol 49: 893-908.
61. Selenka E, de Man JG, Bulow C (1883) Die Sipunculiden, eine systematische Monographie. Semper Reisen in Archipel Phillippinen 2(4): 1-131.
62. Shipley AE (1898) Report on the Gephyrean worms collected by Mr. J. Stanley Gardiner at Rotuma and Funafuti. J Zool: 468-473.
63. Shulman MJ, Bermingham E (1995) Early life histories, ocean currents, and the population genetics of Caribbean reef fishes. Evolution 49: 897-910.
64. Sluiter CP (1891) Die Evertebraten aus der Sammlung des Koniglichen naturwissenschaftlichen Vereins in Nederlandisch-Indien in Batavia. Naturk Tijdschr Nederl Ind 50: 102-123.
65. Smith SA, Dunn CW (2008) Phyutility: a phyloinformatics tool for trees, alignments and molecular data. Bioinformatics 24: 715-716.
66. Solé-Cava AM, Thorpe JP (1986) Genetic differentiation between morphotypes of the marine sponge Suberites ficus (Demospongiae, Hadromerida). Mar Biol 93: 247-253.
67. Stamatakis A (2006) RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
68. Stamatakis A, Hoover P, Rougemont J (2008) A rapid bootstrap algorithm for the RAxML Web Servers. Syst Biol 57: 758-771.
69. Staton J, Rice ME (1999) Genetic differentiation despite teleplanic larval dispersal: Allozyme variation in sipunculans of the Apionsoma misakianum species complex. Bull Mar Sci 65: 467-480.
70. Stephen AC (1960) Echiuroidea and Sipunculoidea from Senegal, West Africa. Bulletin de l'Institut Francais d'Afrique Noire 22a: 512-520.
71. Stephen AC, Edmonds SJ (1972) The phyla Sipuncula and Echiura. Trustees British Mus (Nat Hist), London 528 p.
72. Tarjuelo I, Posada D, Crandall KA, Pascual M, Turon X (2004) Phylogeography and speciation of colour morphs in the colonial ascidian Pseudodistoma crucigaster. Mol Ecol 13: 3125-3136.
73. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619-633.
74. Ten Broeke A (1925) Westindische Sipunculiden und Echuiriden. Bijdr Dierkd 24: 81-96.
75. Terranova MS, Lo Brutto S, Arculeo M, Mitton JB (2007) A mitochondrial phylogeography of Brachidontes variabilis (Bivalvia: Mytilidae) reveals three cryptic species. J Zool Syst Evol Res 45: 289-298.
76. Thornhill DJ, Mahon AR, Norenburg JL, Halanych KM (2008) Open-ocean barriers to dispersal: a test case with the Antarctic Polar Front and the ribbon worm Parborlasia corrugatus (Nemertea: Lineidae). Mol Ecol 17: 5104-5117.
77. Thorpe JP, Solé-Cava AM (1994) The use of allozyme electrophoresis in invertebrate systematics. Zool Scr 23: 3-18.
78. Uthicke S, O'Hara TD, Byrne M (2004) Species composition and molecular phylogeny of the Indo-Pacific teatfish (Echinodermata: Holothuroidea) beche-de-mer fishery. Mar Freshwater Res 55: 837-848.
79. Varon A, Sy Vinh L, Wheeler WC (2009) POY version 4: phylogenetic analysis using dynamic homologies. Cladistics. doi: 10. 1111/j. 1096-0031. 2009. 00282. x.
80. Warnke K, Soller R, Blohm D, Saint-Paul U (2004) A new look at geographic and phylogenetic relationships within the species group surrounding Octopus vulgaris (Mollusca, Cephalopoda): indications of very wide distribution from mitochondrial DNA sequences. J Zool Syst Evol Res 42: 306-312.
81. Waters JM, Roy MS (2004) Out of Africa: The slow train to Australasia. Syst Biol 53: 18-24.
82. Westheide W, Schmidt H (2003) Cosmopolitan versus cryptic meiofaunal polychaete species: an approach to a molecular taxonomy. Helgol Mar Res 57: 1-6.
83. Wheeler W, Aagesen L, Arango CP, Faivovich J, Grant T, D'Haese C, Janies D, Smith WL, Varon A, Giribet G (2006) Dynamic homology and phylogenetic systematics: a unified approach using POY. American Museum of Natural History, 365 pp.
84. Wiens JJ (1999) Polymorphism in systematics and comparative biology. Annu Rev Ecol Syst 30: 327-362.