-
1
-
-
84937208681
-
HIV-1 capsid: The multifaceted key player in HIV-1 infection
-
Campbell, E. M., Hope, T. J. HIV-1 capsid: the multifaceted key player in HIV-1 infection. Nat. Rev. Microbiol. 13, 471-483 (2015).
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 471-483
-
-
Campbell, E.M.1
Hope, T.J.2
-
2
-
-
84888054227
-
HIV-1 evades innate immune recognition through specific cofactor recruitment
-
Rasaiyaah, J. et al. HIV-1 evades innate immune recognition through specific cofactor recruitment. Nature 503, 402-405 (2013).
-
(2013)
Nature
, vol.503
, pp. 402-405
-
-
Rasaiyaah, J.1
-
3
-
-
84908343681
-
Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly
-
Price, A. J. et al. Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly. PLoS Pathog. 10, e1004459 (2014).
-
(2014)
PLoS Pathog.
, vol.10
, pp. e1004459
-
-
Price, A.J.1
-
4
-
-
34250824708
-
HIV-1 DNA Flap formation promotes uncoating of the pre-integration complex at the nuclear pore
-
Arhel, N. J. et al. HIV-1 DNA Flap formation promotes uncoating of the pre-integration complex at the nuclear pore. EMBO J. 26, 3025-3037 (2007).
-
(2007)
EMBO J.
, vol.26
, pp. 3025-3037
-
-
Arhel, N.J.1
-
5
-
-
0030448994
-
Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid
-
Gamble, T. R. et al. Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid. Cell 87, 1285-1294 (1996).
-
(1996)
Cell
, vol.87
, pp. 1285-1294
-
-
Gamble, T.R.1
-
6
-
-
33749009745
-
Implications for viral capsid assembly from crystal structures of HIV-1 Gag(1-278) and CA(N)(133-278)
-
Kelly, B. N. et al. Implications for viral capsid assembly from crystal structures of HIV-1 Gag(1-278) and CA(N)(133-278). Biochemistry 45, 11257-11266 (2006).
-
(2006)
Biochemistry
, vol.45
, pp. 11257-11266
-
-
Kelly, B.N.1
-
7
-
-
77958123846
-
Conformational adaptation of Asian macaque TRIMCyp directs lineage specific antiviral activity
-
Ylinen, L. M. J. et al. Conformational adaptation of Asian macaque TRIMCyp directs lineage specific antiviral activity. PLoS Pathog. 6, e1001062 (2010).
-
(2010)
PLoS Pathog.
, vol.6
, pp. e1001062
-
-
Ylinen, L.M.J.1
-
8
-
-
67549109069
-
X-ray structures of the hexameric building block of the HIV capsid
-
Pornillos, O. et al. X-ray structures of the hexameric building block of the HIV capsid. Cell 137, 1282-1292 (2009).
-
(2009)
Cell
, vol.137
, pp. 1282-1292
-
-
Pornillos, O.1
-
9
-
-
79551683191
-
Structure of the HIV-1 full-length capsid protein in a conformationally trapped unassembled state induced by small-molecule binding
-
Du, S. et al. Structure of the HIV-1 full-length capsid protein in a conformationally trapped unassembled state induced by small-molecule binding. J. Mol. Biol. 406, 371-386 (2011).
-
(2011)
J. Mol. Biol.
, vol.406
, pp. 371-386
-
-
Du, S.1
-
10
-
-
78751670547
-
Atomic-level modelling of the HIV capsid
-
Pornillos, O., Ganser-Pornillos, B. K., Yeager, M. Atomic-level modelling of the HIV capsid. Nature 469, 424-427 (2011).
-
(2011)
Nature
, vol.469
, pp. 424-427
-
-
Pornillos, O.1
Ganser-Pornillos, B.K.2
Yeager, M.3
-
11
-
-
84866162552
-
CPSF6 defines a conserved capsid interface that modulates HIV-1 replication
-
Price, A. J. et al. CPSF6 defines a conserved capsid interface that modulates HIV-1 replication. PLoS Pathog. 8, e1002896 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1002896
-
-
Price, A.J.1
-
12
-
-
0032536896
-
Proteolytic refolding of the HIV-1 capsid protein amino-terminus facilitates viral core assembly
-
von Schwedler, U. K. et al. Proteolytic refolding of the HIV-1 capsid protein amino-terminus facilitates viral core assembly. EMBO J.17, 1555-1568 (1998).
-
(1998)
EMBO J.
, vol.17
, pp. 1555-1568
-
-
Von Schwedler, U.K.1
-
13
-
-
84859990184
-
Frequent incorporation of ribonucleotides during HIV-1 reverse transcription and their attenuated repair in macrophages
-
Kennedy, E. M., Amie, S. M., Bambara, R. A., Kim, B. Frequent incorporation of ribonucleotides during HIV-1 reverse transcription and their attenuated repair in macrophages. J. Biol. Chem. 287, 14280-14288 (2012).
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 14280-14288
-
-
Kennedy, E.M.1
Amie, S.M.2
Bambara, R.A.3
Kim, B.4
-
14
-
-
84939644294
-
The moderately efficient enzyme: Futile encounters and enzyme floppiness
-
Bar-Even, A., Milo, R., Noor, E., Tawfik, D. S. The Moderately Efficient Enzyme: Futile Encounters and Enzyme Floppiness. Biochemistry 54, 4969-4977 (2015).
-
(2015)
Biochemistry
, vol.54
, pp. 4969-4977
-
-
Bar-Even, A.1
Milo, R.2
Noor, E.3
Tawfik, D.S.4
-
15
-
-
0029873697
-
Rapid electrostatically assisted association of proteins
-
Schreiber, G., Fersht, A. R. Rapid, electrostatically assisted association of proteins. Nat. Struct. Biol. 3, 427-431 (1996).
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 427-431
-
-
Schreiber, G.1
Fersht, A.R.2
-
16
-
-
0028351165
-
Contribution of unusual arginine-arginine short-range interactions to stabilization and recognition in proteins
-
Magalhaes, A., Maigret, B., Hoflack, J., Gomes, J. N., Scheraga, H. A. Contribution of unusual arginine-arginine short-range interactions to stabilization and recognition in proteins. J. Protein Chem. 13, 195-215 (1994).
-
(1994)
J. Protein Chem.
, vol.13
, pp. 195-215
-
-
Magalhaes, A.1
Maigret, B.2
Hoflack, J.3
Gomes, J.N.4
Scheraga, H.A.5
-
17
-
-
84862288756
-
Unusual arginine formations in protein function and assembly: Rings, strings, and stacks
-
Neves, M. A., Yeager, M., Abagyan, R. Unusual arginine formations in protein function and assembly: rings, strings, and stacks. J. Phys. Chem. B 116, 7006-7013 (2012).
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 7006-7013
-
-
Neves, M.A.1
Yeager, M.2
Abagyan, R.3
-
18
-
-
39149136512
-
Structure of B-MLV capsid amino-terminal domain reveals key features of viral tropism, gag assembly and core formation
-
Mortuza, G. B. et al. Structure of B-MLV capsid amino-terminal domain reveals key features of viral tropism, gag assembly and core formation. J. Mol. Biol. 376, 1493-1508 (2008).
-
(2008)
J. Mol. Biol.
, vol.376
, pp. 1493-1508
-
-
Mortuza, G.B.1
-
19
-
-
84879544085
-
Extreme genetic fragility of the HIV-1 capsid
-
Rihn, S. J. et al. Extreme genetic fragility of the HIV-1 capsid. PLoS Pathog. 9, e1003461 (2013).
-
(2013)
PLoS Pathog.
, vol.9
, pp. e1003461
-
-
Rihn, S.J.1
-
20
-
-
3242670402
-
The human and African green monkey TRIM5alpha genes encode Ref1 and Lv1 retroviral restriction factor activities
-
Keckesova, Z., Ylinen, L. M., Towers, G. J. The human and African green monkey TRIM5alpha genes encode Ref1 and Lv1 retroviral restriction factor activities. Proc. Natl Acad. Sci. USA 101, 10780-10785 (2004).
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 10780-10785
-
-
Keckesova, Z.1
Ylinen, L.M.2
Towers, G.J.3
-
21
-
-
83455195351
-
In vitro uncoating of HIV-1 cores
-
Shah, V. B., Aiken, C. In vitro uncoating of HIV-1 cores. J. Vis. Exp. 57, 3384 (2011).
-
(2011)
J. Vis. Exp.
, vol.57
, pp. 3384
-
-
Shah, V.B.1
Aiken, C.2
-
22
-
-
78049308973
-
Strand transfer and elongation of HIV-1 reverse transcription is facilitated by cell factors in vitro
-
Warrilow, D., Warren, K., Harrich, D. Strand transfer and elongation of HIV-1 reverse transcription is facilitated by cell factors in vitro. PLoS One 5, e13229 (2010).
-
(2010)
PLoS One
, vol.5
, pp. e13229
-
-
Warrilow, D.1
Warren, K.2
Harrich, D.3
-
23
-
-
0035989992
-
Stochastic sensing of nanomolar inositol 1,4,5-trisphosphate with an engineered pore
-
Cheley, S., Gu, L. Q., Bayley, H. Stochastic sensing of nanomolar inositol 1,4,5-trisphosphate with an engineered pore. Chem. Biol. 9, 829-838 (2002).
-
(2002)
Chem. Biol.
, vol.9
, pp. 829-838
-
-
Cheley, S.1
Gu, L.Q.2
Bayley, H.3
-
24
-
-
74849140487
-
Structure and mechanisms of a protein-based organelle in Escherichia coli
-
Tanaka, S., Sawaya, M. R., Yeates, T. O. Structure and mechanisms of a protein-based organelle in Escherichia coli. Science 327, 81-84 (2010).
-
(2010)
Science
, vol.327
, pp. 81-84
-
-
Tanaka, S.1
Sawaya, M.R.2
Yeates, T.O.3
-
25
-
-
84924325932
-
Selective molecular transport through the protein shell of a bacterial microcompartment organelle
-
Chowdhury, C. et al. Selective molecular transport through the protein shell of a bacterial microcompartment organelle. Proc. Natl Acad. Sci. USA 112, 2990-2995 (2015).
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. 2990-2995
-
-
Chowdhury, C.1
-
26
-
-
23244439942
-
Protein structures forming the shell of primitive bacterial organelles
-
Kerfeld, C. A. et al. Protein structures forming the shell of primitive bacterial organelles. Science 309, 936-938 (2005).
-
(2005)
Science
, vol.309
, pp. 936-938
-
-
Kerfeld, C.A.1
-
27
-
-
70349807596
-
Active site remodeling switches HIV specificity of antiretroviral TRIMCyp
-
Price, A. J. et al. Active site remodeling switches HIV specificity of antiretroviral TRIMCyp. Nat. Struct. Mol. Biol. 16, 1036-1042 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1036-1042
-
-
Price, A.J.1
-
28
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
Winn, M. D. et al. Overview of the CCP4 suite and current developments. Acta Crystallogr. D 67, 235-242 (2011).
-
(2011)
Acta Crystallogr. D
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
-
29
-
-
71649092785
-
Processing diffraction data with MOSFLM
-
Leslie, A. G. W., Powell, H. R. Processing diffraction data with MOSFLM. Nato Sci Ser Ii Math 245, 41-51 (2007).
-
(2007)
Nato Sci ser II Math
, vol.245
, pp. 41-51
-
-
Leslie, A.G.W.1
Powell, H.R.2
-
30
-
-
79953747244
-
An introduction to data reduction: Space-group determination, scaling and intensity statistics
-
Evans, P. R. An introduction to data reduction: space-group determination, scaling and intensity statistics. Acta Crystallogr. D 67, 282-292 (2011).
-
(2011)
Acta Crystallogr. D
, vol.67
, pp. 282-292
-
-
Evans, P.R.1
-
31
-
-
84879367781
-
How good are my data and what is the resolution?
-
Evans, P. R., Murshudov, G. N. How good are my data and what is the resolution? Acta Crystallogr. D 69, 1204-1214 (2013).
-
(2013)
Acta Crystallogr. D
, vol.69
, pp. 1204-1214
-
-
Evans, P.R.1
Murshudov, G.N.2
-
32
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J. et al. Phaser crystallographic software. J. Appl. Crystallogr. 40, 658-674 (2007).
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
33
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A., Dodson, E. J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53, 240-255 (1997).
-
(1997)
Acta Crystallogr. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
34
-
-
13244281317
-
Coot model-building tools for molecular graphics
-
Emsley, P., Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132 (2004).
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
35
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
36
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker, N. A., Sept, D., Joseph, S., Holst, M. J., McCammon, J. A. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl Acad. Sci. USA 98, 10037-10041 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
37
-
-
77954262905
-
3V: Cavity, channel and cleft volume calculator and extractor
-
Voss, N. R., Gerstein, M. 3V: cavity, channel and cleft volume calculator and extractor. Nucleic Acids Res. 38, W555-W562 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W555-W562
-
-
Voss, N.R.1
Gerstein, M.2
-
38
-
-
84878381053
-
Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics
-
Zhao, G. et al. Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics. Nature 497, 643-646 (2013).
-
(2013)
Nature
, vol.497
, pp. 643-646
-
-
Zhao, G.1
-
39
-
-
84935097050
-
Structural virology. X-ray crystal structures of native HIV-1 capsid protein reveal conformational variability
-
Gres, A. T. et al. Structural virology. X-ray crystal structures of native HIV-1 capsid protein reveal conformational variability. Science 349, 99-103 (2015).
-
(2015)
Science
, vol.349
, pp. 99-103
-
-
Gres, A.T.1
-
40
-
-
0034990535
-
Replication of phenotypically mixed human immunodeficiency virus type 1 virions containing catalytically active and catalytically inactive reverse transcriptase
-
Julias, J. G., Ferris, A. L., Boyer, P. L., Hughes, S. H. Replication of phenotypically mixed human immunodeficiency virus type 1 virions containing catalytically active and catalytically inactive reverse transcriptase. J. Virol. 75, 6537-6546 (2001).
-
(2001)
J. Virol.
, vol.75
, pp. 6537-6546
-
-
Julias, J.G.1
Ferris, A.L.2
Boyer, P.L.3
Hughes, S.H.4
|