-
1
-
-
67449113551
-
Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae
-
Azvolinsky, A., P.G. Giresi, J.D. Lieb, and V.A. Zakian. 2009. Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae. Mol. Cell. 34:722-734. http ://dx.doi.org /10 .1016 /j.molcel.2009.05.022
-
(2009)
Mol. Cell
, vol.34
, pp. 722-734
-
-
Azvolinsky, A.1
Giresi, P.G.2
Lieb, J.D.3
Zakian, V.A.4
-
2
-
-
84873310832
-
Identification of early replicating fragile sites that contribute to genome instability
-
Barlow, J.H., R.B. Faryabi, E. Callén, N. Wong, A. Malhowski, H.T. Chen, G. Gutierrez-Cruz, H.W. Sun, P. McKinnon, G. Wright, et al. 2013. Identification of early replicating fragile sites that contribute to genome instability. Cell. 152:620-632. http ://dx.doi.org /10.1016 /j.cell.2013.01.006
-
(2013)
Cell
, vol.152
, pp. 620-632
-
-
Barlow, J.H.1
Faryabi, R.B.2
Callén, E.3
Wong, N.4
Malhowski, A.5
Chen, H.T.6
Gutierrez-Cruz, G.7
Sun, H.W.8
McKinnon, P.9
Wright, G.10
-
3
-
-
75649142564
-
The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo
-
Boubakri, H., A.L. de Septenville, E. Viguera, and B. Michel. 2010. The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo. EMBO J. 29:145-157. http ://dx.doi.org /10 .1038 /emboj.2009.308
-
(2010)
EMBO J
, vol.29
, pp. 145-157
-
-
Boubakri, H.1
de Septenville, A.L.2
Viguera, E.3
Michel, B.4
-
4
-
-
84902187810
-
Human RecQ helicases in DNA repair, recombination, and replication
-
Croteau, D.L., V. Popuri, P.L. Opresko, and V.A. Bohr. 2014. Human RecQ helicases in DNA repair, recombination, and replication. Annu. Rev. Biochem. 83:519-552. http ://dx.doi.org /10.1146 /annurev -biochem -060713 -035428
-
(2014)
Annu. Rev. Biochem
, vol.83
, pp. 519-552
-
-
Croteau, D.L.1
Popuri, V.2
Opresko, P.L.3
Bohr, V.A.4
-
5
-
-
38049162608
-
Chromosome fragile sites
-
Durkin, S.G., and T.W. Glover. 2007. Chromosome fragile sites. Annu. Rev. Genet. 41:169-192. http ://dx.doi.org /10.1146 /annurev.genet.41.042007 .165900
-
(2007)
Annu. Rev. Genet
, vol.41
, pp. 169-192
-
-
Durkin, S.G.1
Glover, T.W.2
-
6
-
-
0033570150
-
Resolution of head-on collisions between the transcription machinery and bacteriophage phi29 DNA polymerase is dependent on RNA polymerase translocation
-
Elías-Arnanz, M., and M. Salas. 1999. Resolution of head-on collisions between the transcription machinery and bacteriophage phi29 DNA polymerase is dependent on RNA polymerase translocation. EMBO J. 18:5675-5682. http ://dx.doi.org /10.1093 /emboj /18.20.5675
-
(1999)
EMBO J
, vol.18
, pp. 5675-5682
-
-
Elías-Arnanz, M.1
Salas, M.2
-
7
-
-
84921314292
-
RNA polymerase II contributes to preventing transcriptionmediated replication fork stalls
-
Felipe-Abrio, I., J. Lafuente-Barquero, M.L. García-Rubio, and A. Aguilera. 2015. RNA polymerase II contributes to preventing transcriptionmediated replication fork stalls. EMBO J. 34:236-250. http ://dx.doi.org /10.15252 /embj.201488544
-
(2015)
EMBO J
, vol.34
, pp. 236-250
-
-
Felipe-Abrio, I.1
Lafuente-Barquero, J.2
García-Rubio, M.L.3
Aguilera, A.4
-
8
-
-
3543007196
-
Human RECQ5beta, a protein with DNA helicase and strand-annealing activities in a single polypeptide
-
Garcia, P.L., Y. Liu, J. Jiricny, S.C. West, and P. Janscak. 2004. Human RECQ5beta, a protein with DNA helicase and strand-annealing activities in a single polypeptide. EMBO J. 23:2882-2891. http ://dx.doi.org /10 .1038 /sj.emboj.7600301
-
(2004)
EMBO J
, vol.23
, pp. 2882-2891
-
-
Garcia, P.L.1
Liu, Y.2
Jiricny, J.3
West, S.C.4
Janscak, P.5
-
9
-
-
84923345909
-
Phenotypic characterization of missense polymerase-d mutations using an inducible protein-replacement system
-
Ghodgaonkar, M.M., P. Kehl, I. Ventura, L. Hu, M. Bignami, and J. Jiricny. 2014. Phenotypic characterization of missense polymerase-d mutations using an inducible protein-replacement system. Nat. Commun. 5:4990. http ://dx.doi.org /10.1038 /ncomms5990
-
(2014)
Nat. Commun
, vol.5
, pp. 4990
-
-
Ghodgaonkar, M.M.1
Kehl, P.2
Ventura, I.3
Hu, L.4
Bignami, M.5
Jiricny, J.6
-
10
-
-
0038506040
-
Life on a planet of its own: Regulation of RNA polymerase I transcription in the nucleolus
-
Grummt, I. 2003. Life on a planet of its own: Regulation of RNA polymerase I transcription in the nucleolus. Genes Dev. 17:1691-1702. http ://dx.doi .org /10.1101 /gad.1098503R
-
(2003)
Genes Dev
, vol.17
, pp. 1691-1702
-
-
Grummt, I.1
-
11
-
-
84255198334
-
Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes
-
Helmrich, A., M. Ballarino, and L. Tora. 2011. Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes. Mol. Cell. 44:966-977. http ://dx.doi.org /10.1016 /j .molcel.2011.10.013
-
(2011)
Mol. Cell
, vol.44
, pp. 966-977
-
-
Helmrich, A.1
Ballarino, M.2
Tora, L.3
-
12
-
-
84876188716
-
Transcriptionreplication encounters, consequences and genomic instability
-
Helmrich, A., M. Ballarino, E. Nudler, and L. Tora. 2013. Transcriptionreplication encounters, consequences and genomic instability. Nat. Struct. Mol. Biol. 20:412-418. http ://dx.doi.org /10.1038 /nsmb.2543
-
(2013)
Nat. Struct. Mol. Biol
, vol.20
, pp. 412-418
-
-
Helmrich, A.1
Ballarino, M.2
Nudler, E.3
Tora, L.4
-
13
-
-
36849013079
-
REC QL5/Recql5 helicase regulates homologous recombination and suppresses tumor formation via disruption of Rad51 presynaptic filaments
-
Hu, Y., S. Raynard, M.G. Sehorn, X. Lu, W. Bussen, L. Zheng, J.M. Stark, E.L. Barnes, P. Chi, P. Janscak, et al. 2007. REC QL5/Recql5 helicase regulates homologous recombination and suppresses tumor formation via disruption of Rad51 presynaptic filaments. Genes Dev. 21:3073-3084. http ://dx.doi.org /10.1101 /gad.1609107
-
(2007)
Genes Dev
, vol.21
, pp. 3073-3084
-
-
Hu, Y.1
Raynard, S.2
Sehorn, M.G.3
Lu, X.4
Bussen, W.5
Zheng, L.6
Stark, J.M.7
Barnes, E.L.8
Chi, P.9
Janscak, P.10
-
14
-
-
48249140331
-
Association of human DNA helicase RecQ5beta with RNA polymerase II and its possible role in transcription
-
Izumikawa, K., M. Yanagida, T. Hayano, H. Tachikawa, W. Komatsu, A. Shimamoto, K. Futami, Y. Furuichi, T. Shinkawa, Y. Yamauchi, et al. 2008. Association of human DNA helicase RecQ5beta with RNA polymerase II and its possible role in transcription. Biochem. J. 413:505-516. http ://dx.doi.org /10.1042 /BJ20071392
-
(2008)
Biochem. J
, vol.413
, pp. 505-516
-
-
Izumikawa, K.1
Yanagida, M.2
Hayano, T.3
Tachikawa, H.4
Komatsu, W.5
Shimamoto, A.6
Futami, K.7
Furuichi, Y.8
Shinkawa, T.9
Yamauchi, Y.10
-
15
-
-
84881480253
-
Increased replication initiation and conflicts with transcription underlie Cyclin E-induced replication stress
-
Jones, R.M., O. Mortusewicz, I. Afzal, M. Lorvellec, P. García, T. Helleday, and E. Petermann. 2013. Increased replication initiation and conflicts with transcription underlie Cyclin E-induced replication stress. Oncogene. 32:3744-3753. http ://dx.doi.org /10.1038 /onc.2012.387
-
(2013)
Oncogene
, vol.32
, pp. 3744-3753
-
-
Jones, R.M.1
Mortusewicz, O.2
Afzal, I.3
Lorvellec, M.4
García, P.5
Helleday, T.6
Petermann, E.7
-
16
-
-
33750980979
-
Human RECQ5beta helicase promotes strand exchange on synthetic DNA structures resembling a stalled replication fork
-
Kanagaraj, R., N. Saydam, P.L. Garcia, L. Zheng, and P. Janscak. 2006. Human RECQ5beta helicase promotes strand exchange on synthetic DNA structures resembling a stalled replication fork. Nucleic Acids Res. 34:5217-5231. http ://dx.doi.org /10.1093 /nar /gkl677
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5217-5231
-
-
Kanagaraj, R.1
Saydam, N.2
Garcia, P.L.3
Zheng, L.4
Janscak, P.5
-
17
-
-
77958595004
-
RECQ5 helicase associates with the C-terminal repeat domain of RNA polymerase II during productive elongation phase of transcription
-
Kanagaraj, R., D. Huehn, A. MacKellar, M. Menigatti, L. Zheng, V. Urban, I. Shevelev, A.L. Greenleaf, and P. Janscak. 2010. RECQ5 helicase associates with the C-terminal repeat domain of RNA polymerase II during productive elongation phase of transcription. Nucleic Acids Res. 38:8131-8140. http ://dx.doi.org /10.1093 /nar /gkq697
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 8131-8140
-
-
Kanagaraj, R.1
Huehn, D.2
MacKellar, A.3
Menigatti, M.4
Zheng, L.5
Urban, V.6
Shevelev, I.7
Greenleaf, A.L.8
Janscak, P.9
-
18
-
-
0346732323
-
BRCA1 associates with processive RNA polymerase II
-
Krum, S.A., G.A. Miranda, C. Lin, and T.F. Lane. 2003. BRCA1 associates with processive RNA polymerase II. J. Biol. Chem. 278:52012-52020. http ://dx.doi.org /10.1074 /jbc.M308418200
-
(2003)
J. Biol. Chem
, vol.278
, pp. 52012-52020
-
-
Krum, S.A.1
Miranda, G.A.2
Lin, C.3
Lane, T.F.4
-
19
-
-
13244277994
-
The chromatin remodeling complex NoRC controls replication timing of rRNA genes
-
Li, J., R. Santoro, K. Koberna, and I. Grummt. 2005. The chromatin remodeling complex NoRC controls replication timing of rRNA genes. EMBO J. 24:120-127. http ://dx.doi.org /10.1038 /sj.emboj.7600492
-
(2005)
EMBO J
, vol.24
, pp. 120-127
-
-
Li, J.1
Santoro, R.2
Koberna, K.3
Grummt, I.4
-
20
-
-
79956140211
-
The SET2-RPB1 interaction domain of human RECQ5 is important for transcription-associated genome stability
-
Li, M., X. Xu, and Y. Liu. 2011. The SET2-RPB1 interaction domain of human RECQ5 is important for transcription-associated genome stability. Mol. Cell. Biol. 31:2090-2099. http ://dx.doi.org /10.1128 /MCB.01137 -10
-
(2011)
Mol. Cell. Biol
, vol.31
, pp. 2090-2099
-
-
Li, M.1
Xu, X.2
Liu, Y.3
-
21
-
-
0027486027
-
Initiation and termination of DNA replication in human rRNA genes
-
Little, R.D., T.H. Platt, and C.L. Schildkraut. 1993. Initiation and termination of DNA replication in human rRNA genes. Mol. Cell. Biol. 13:6600-6613. http ://dx.doi.org /10.1128 /MCB.13.10.6600
-
(1993)
Mol. Cell. Biol
, vol.13
, pp. 6600-6613
-
-
Little, R.D.1
Platt, T.H.2
Schildkraut, C.L.3
-
22
-
-
36248966246
-
RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins
-
Mailand, N., S. Bekker-Jensen, H. Faustrup, F. Melander, J. Bartek, C. Lukas, and J. Lukas. 2007. RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins. Cell. 131:887-900. http ://dx.doi.org /10.1016 /j.cell.2007.09.040
-
(2007)
Cell
, vol.131
, pp. 887-900
-
-
Mailand, N.1
Bekker-Jensen, S.2
Faustrup, H.3
Melander, F.4
Bartek, J.5
Lukas, C.6
Lukas, J.7
-
23
-
-
84881171891
-
Single cell analysis of human RAD18-dependent DNA post-replication repair by alkaline bromodeoxyuridine comet assay
-
Mórocz, M., H. Gali, I. Raskó, C.S. Downes, and L. Haracska. 2013. Single cell analysis of human RAD18-dependent DNA post-replication repair by alkaline bromodeoxyuridine comet assay. PLoS One. 8:e70391. http ://dx.doi.org /10.1371 /journal.pone.0070391
-
(2013)
PLoS One
, vol.8
-
-
Mórocz, M.1
Gali, H.2
Raskó, I.3
Downes, C.S.4
Haracska, L.5
-
24
-
-
82455202433
-
dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells
-
Nejepinska, J., R. Malik, J. Filkowski, M. Flemr, W. Filipowicz, and P. Svoboda. 2012. dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells. Nucleic Acids Res. 40:399-413. http ://dx.doi.org /10.1093 /nar /gkr702
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 399-413
-
-
Nejepinska, J.1
Malik, R.2
Filkowski, J.3
Flemr, M.4
Filipowicz, W.5
Svoboda, P.6
-
25
-
-
55849091416
-
Regulation of proliferating cell nuclear antigen ubiquitination in mammalian cells
-
Niimi, A., S. Brown, S. Sabbioneda, P.L. Kannouche, A. Scott, A. Yasui, C.M. Green, and A.R. Lehmann. 2008. Regulation of proliferating cell nuclear antigen ubiquitination in mammalian cells. Proc. Natl. Acad. Sci. USA. 105:16125-16130. http ://dx.doi.org /10.1073 /pnas.0802727105
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 16125-16130
-
-
Niimi, A.1
Brown, S.2
Sabbioneda, S.3
Kannouche, P.L.4
Scott, A.5
Yasui, A.6
Green, C.M.7
Lehmann, A.R.8
-
26
-
-
79952257414
-
Transcription and replication: breaking the rules of the road causes genomic instability
-
Poveda, A.M., M. Le Clech, and P. Pasero. 2010. Transcription and replication: breaking the rules of the road causes genomic instability. Transcription. 1:99-102. http ://dx.doi.org /10.4161 /trns.1.2.12665
-
(2010)
Transcription
, vol.1
, pp. 99-102
-
-
Poveda, A.M.1
Le Clech, M.2
Pasero, P.3
-
27
-
-
84858315982
-
DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S
-
Sabouri, N., K.R. McDonald, C.J. Webb, I.M. Cristea, and V.A. Zakian. 2012. DNA replication through hard-to-replicate sites, including both highly transcribed RNA Pol II and Pol III genes, requires the S. pombe Pfh1 helicase. Genes Dev. 26:581-593. http ://dx.doi.org /10.1101 /gad .184697.111
-
(2012)
pombe Pfh1 helicase. Genes Dev
, vol.26
, pp. 581-593
-
-
Sabouri, N.1
McDonald, K.R.2
Webb, C.J.3
Cristea, I.M.4
Zakian, V.A.5
-
28
-
-
84901408644
-
REC QL5 controls transcript elongation and suppresses genome instability associated with transcription stress
-
Saponaro, M., T. Kantidakis, R. Mitter, G.P. Kelly, M. Heron, H. Williams, J. Söding, A. Stewart, and J.Q. Svejstrup. 2014. REC QL5 controls transcript elongation and suppresses genome instability associated with transcription stress. Cell. 157:1037-1049. http ://dx.doi.org /10.1016 /j.cell .2014.03.048
-
(2014)
Cell
, vol.157
, pp. 1037-1049
-
-
Saponaro, M.1
Kantidakis, T.2
Mitter, R.3
Kelly, G.P.4
Heron, M.5
Williams, H.6
Söding, J.7
Stewart, A.8
Svejstrup, J.Q.9
-
29
-
-
84863753191
-
A distinct replication fork protection pathway connects Fanconi anemia tumor suppressors to RAD51- BRCA1/2
-
Schlacher, K., H. Wu, and M. Jasin. 2012. A distinct replication fork protection pathway connects Fanconi anemia tumor suppressors to RAD51- BRCA1/2. Cancer Cell. 22:106-116. http ://dx.doi.org /10.1016 /j.ccr .2012.05.015
-
(2012)
Cancer Cell
, vol.22
, pp. 106-116
-
-
Schlacher, K.1
Wu, H.2
Jasin, M.3
-
30
-
-
77952372219
-
Physical interaction of RECQ5 helicase with RAD51 facilitates its anti-recombinase activity
-
Schwendener, S., S. Raynard, S. Paliwal, A. Cheng, R. Kanagaraj, I. Shevelev, J.M. Stark, P. Sung, and P. Janscak. 2010. Physical interaction of RECQ5 helicase with RAD51 facilitates its anti-recombinase activity. J. Biol. Chem. 285:15739-15745. http ://dx.doi.org /10.1074 /jbc.M110.110478
-
(2010)
J. Biol. Chem
, vol.285
, pp. 15739-15745
-
-
Schwendener, S.1
Raynard, S.2
Paliwal, S.3
Cheng, A.4
Kanagaraj, R.5
Shevelev, I.6
Stark, J.M.7
Sung, P.8
Janscak, P.9
-
31
-
-
0031472370
-
Association of BRCA1 with Rad51 in mitotic and meiotic cells
-
Scully, R., J. Chen, A. Plug, Y. Xiao, D. Weaver, J. Feunteun, T. Ashley, and D.M. Livingston. 1997. Association of BRCA1 with Rad51 in mitotic and meiotic cells. Cell. 88:265-275. http ://dx.doi.org /10.1016 /S0092 -8674(00)81847 -4
-
(1997)
Cell
, vol.88
, pp. 265-275
-
-
Scully, R.1
Chen, J.2
Plug, A.3
Xiao, Y.4
Weaver, D.5
Feunteun, J.6
Ashley, T.7
Livingston, D.M.8
-
32
-
-
0036929125
-
DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters
-
Sporbert, A., A. Gahl, R. Ankerhold, H. Leonhardt, and M.C. Cardoso. 2002. DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters. Mol. Cell. 10:1355-1365. http ://dx.doi.org /10.1016 /S1097 -2765(02)00729 -3
-
(2002)
Mol. Cell
, vol.10
, pp. 1355-1365
-
-
Sporbert, A.1
Gahl, A.2
Ankerhold, R.3
Leonhardt, H.4
Cardoso, M.C.5
-
33
-
-
0038046165
-
Transcription-dependent recombination and the role of fork collision in yeast rDNA
-
Takeuchi, Y., T. Horiuchi, and T. Kobayashi. 2003. Transcription-dependent recombination and the role of fork collision in yeast rDNA. Genes Dev. 17:1497-1506. http ://dx.doi.org /10.1101 /gad.1085403
-
(2003)
Genes Dev
, vol.17
, pp. 1497-1506
-
-
Takeuchi, Y.1
Horiuchi, T.2
Kobayashi, T.3
-
34
-
-
41149165416
-
Recognition of forked and single-stranded DNA structures by human RAD18 complexed with RAD6B protein triggers its recruitment to stalled replication forks
-
Tsuji, Y., K. Watanabe, K. Araki, M. Shinohara, Y. Yamagata, T. Tsurimoto, F. Hanaoka, K. Yamamura, M. Yamaizumi, and S. Tateishi. 2008. Recognition of forked and single-stranded DNA structures by human RAD18 complexed with RAD6B protein triggers its recruitment to stalled replication forks. Genes Cells. 13:343-354. http ://dx.doi.org /10 .1111 /j.1365 -2443.2008.01176.x
-
(2008)
Genes Cells
, vol.13
, pp. 343-354
-
-
Tsuji, Y.1
Watanabe, K.2
Araki, K.3
Shinohara, M.4
Yamagata, Y.5
Tsurimoto, T.6
Hanaoka, F.7
Yamamura, K.8
Yamaizumi, M.9
Tateishi, S.10
-
35
-
-
84903542170
-
BRCA1 controls homologous recombination at Tus/Terstalled mammalian replication forks
-
Willis, N.A., G. Chandramouly, B. Huang, A. Kwok, C. Follonier, C. Deng, and R. Scully. 2014. BRCA1 controls homologous recombination at Tus/Terstalled mammalian replication forks. Nature. 510:556-559. http ://dx.doi .org /10.1038 /nature13295
-
(2014)
Nature
, vol.510
, pp. 556-559
-
-
Willis, N.A.1
Chandramouly, G.2
Huang, B.3
Kwok, A.4
Follonier, C.5
Deng, C.6
Scully, R.7
-
36
-
-
84922359016
-
Large transcription units unify copy number variants and common fragile sites arising under replication stress
-
Wilson, T.E., M.F. Arlt, S.H. Park, S. Rajendran, M. Paulsen, M. Ljungman, and T.W. Glover. 2015. Large transcription units unify copy number variants and common fragile sites arising under replication stress. Genome Res. 25:189-200. http ://dx.doi.org /10.1101 /gr.177121.114
-
(2015)
Genome Res
, vol.25
, pp. 189-200
-
-
Wilson, T.E.1
Arlt, M.F.2
Park, S.H.3
Rajendran, S.4
Paulsen, M.5
Ljungman, M.6
Glover, T.W.7
-
37
-
-
84912091104
-
Strand-specific analysis shows protein binding at replication forks and PCNA unloading from lagging strands when forks stall
-
Yu, C., H. Gan, J. Han, Z.X. Zhou, S. Jia, A. Chabes, G. Farrugia, T. Ordog, and Z. Zhang. 2014. Strand-specific analysis shows protein binding at replication forks and PCNA unloading from lagging strands when forks stall. Mol. Cell. 56:551-563. http ://dx.doi.org /10.1016 /j.molcel.2014.09.017
-
(2014)
Mol. Cell
, vol.56
, pp. 551-563
-
-
Yu, C.1
Gan, H.2
Han, J.3
Zhou, Z.X.4
Jia, S.5
Chabes, A.6
Farrugia, G.7
Ordog, T.8
Zhang, Z.9
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