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Volumn 8, Issue 1, 2016, Pages

X chromosome-wide analysis identifies DNA methylation sites influenced by cigarette smoking

Author keywords

DNA methylation; Epigenetics; Epigenome; Epigenome wide association study; Heritability; Methylome; Smoking; Twin; X chromosome

Indexed keywords

ADULT; ARTICLE; BCOR GENE; COHORT ANALYSIS; DNA METHYLATION; DNA MODIFICATION; ENVIRONMENTAL EXPOSURE; EPIGENETICS; FEMALE; GENE; GENETIC ASSOCIATION; HUMAN; MALE; MIDDLE AGED; PHENOTYPE; PRIORITY JOURNAL; REPRODUCIBILITY; SEX DIFFERENCE; SMOKING; TSC22D3 GENE; TWINS; X CHROMOSOME; ADVERSE EFFECTS; DRUG EFFECTS; GENETIC EPIGENESIS; GENETICS;

EID: 84983041462     PISSN: 18687075     EISSN: 18687083     Source Type: Journal    
DOI: 10.1186/s13148-016-0189-2     Document Type: Article
Times cited : (29)

References (72)
  • 2
    • 66149137211 scopus 로고    scopus 로고
    • The preventable causes of death in the United States: comparative risk assessment of dietary, lifestyle, and metabolic risk factors
    • PID: 19399161
    • Danaei G, Ding EL, Mozaffarian D, Taylor B, Rehm J, Murray CJ, et al. The preventable causes of death in the United States: comparative risk assessment of dietary, lifestyle, and metabolic risk factors. PLoS Med. 2009;6(4), e1000058. doi:10.1371/journal.pmed.1000058.
    • (2009) PLoS Med , vol.6 , Issue.4
    • Danaei, G.1    Ding, E.L.2    Mozaffarian, D.3    Taylor, B.4    Rehm, J.5    Murray, C.J.6
  • 3
    • 84891932828 scopus 로고    scopus 로고
    • Smoking prevalence and cigarette consumption in 187 countries, 1980–2012
    • COI: 1:CAS:528:DC%2BC2cXitFyjt70%3D, PID: 24399557
    • Ng M, Freeman MK, Fleming TD, Robinson M, Dwyer-Lindgren L, Thomson B, et al. Smoking prevalence and cigarette consumption in 187 countries, 1980–2012. JAMA. 2014;311(2):183–92. doi:10.1001/jama.2013.284692.
    • (2014) JAMA , vol.311 , Issue.2 , pp. 183-192
    • Ng, M.1    Freeman, M.K.2    Fleming, T.D.3    Robinson, M.4    Dwyer-Lindgren, L.5    Thomson, B.6
  • 5
    • 3242663659 scopus 로고    scopus 로고
    • An integrated epigenetic and genetic approach to common human disease
    • COI: 1:CAS:528:DC%2BD2cXlvVWgtbk%3D, PID: 15262407
    • Bjornsson HT, Fallin MD, Feinberg AP. An integrated epigenetic and genetic approach to common human disease. Trends Genet. 2004;20(8):350–8. doi:10.1016/j.tig.2004.06.009.
    • (2004) Trends Genet , vol.20 , Issue.8 , pp. 350-358
    • Bjornsson, H.T.1    Fallin, M.D.2    Feinberg, A.P.3
  • 6
    • 84975667640 scopus 로고    scopus 로고
    • The influences of genetic and environmental factors on methylome-wide association studies for human diseases
    • PID: 25422794
    • Sun YV. The influences of genetic and environmental factors on methylome-wide association studies for human diseases. Curr Genet Med Rep. 2014;2(4):261–70. doi:10.1007/s40142-014-0058-2.
    • (2014) Curr Genet Med Rep , vol.2 , Issue.4 , pp. 261-270
    • Sun, Y.V.1
  • 8
    • 84877870559 scopus 로고    scopus 로고
    • Tobacco smoking leads to extensive genome-wide changes in DNA methylation
    • COI: 1:CAS:528:DC%2BC3sXoslanu70%3D, PID: 23691101
    • Zeilinger S, Kuhnel B, Klopp N, Baurecht H, Kleinschmidt A, Gieger C, et al. Tobacco smoking leads to extensive genome-wide changes in DNA methylation. PLoS One. 2013;8(5), e63812. doi:10.1371/journal.pone.0063812.
    • (2013) PLoS One , vol.8 , Issue.5
    • Zeilinger, S.1    Kuhnel, B.2    Klopp, N.3    Baurecht, H.4    Kleinschmidt, A.5    Gieger, C.6
  • 9
    • 84882580222 scopus 로고    scopus 로고
    • Epigenomic association analysis identifies smoking-related DNA methylation sites in African Americans
    • COI: 1:CAS:528:DC%2BC3sXht1Oqu7jF, PID: 23657504
    • Sun YV, Smith AK, Conneely KN, Chang Q, Li W, Lazarus A, et al. Epigenomic association analysis identifies smoking-related DNA methylation sites in African Americans. Hum Genet. 2013;132(9):1027–37. doi:10.1007/s00439-013-1311-6.
    • (2013) Hum Genet , vol.132 , Issue.9 , pp. 1027-1037
    • Sun, Y.V.1    Smith, A.K.2    Conneely, K.N.3    Chang, Q.4    Li, W.5    Lazarus, A.6
  • 10
    • 84873476594 scopus 로고    scopus 로고
    • Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking
    • COI: 1:CAS:528:DC%2BC3sXhvV2qu7o%3D, PID: 23175441
    • Shenker NS, Polidoro S, van Veldhoven K, Sacerdote C, Ricceri F, Birrell MA, et al. Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking. Hum Mol Genet. 2013;22(5):843–51. doi:10.1093/hmg/dds488.
    • (2013) Hum Mol Genet , vol.22 , Issue.5 , pp. 843-851
    • Shenker, N.S.1    Polidoro, S.2    van Veldhoven, K.3    Sacerdote, C.4    Ricceri, F.5    Birrell, M.A.6
  • 11
    • 84903816327 scopus 로고    scopus 로고
    • Epigenome-wide DNA methylation changes with development of arsenic-induced skin lesions in Bangladesh: a case-control follow-up study
    • PID: 24677489
    • Seow WJ, Kile ML, Baccarelli AA, Pan WC, Byun HM, Mostofa G, et al. Epigenome-wide DNA methylation changes with development of arsenic-induced skin lesions in Bangladesh: a case-control follow-up study. Environ Mol Mutagen. 2014;55(6):449–56. doi:10.1002/em.21860.
    • (2014) Environ Mol Mutagen , vol.55 , Issue.6 , pp. 449-456
    • Seow, W.J.1    Kile, M.L.2    Baccarelli, A.A.3    Pan, W.C.4    Byun, H.M.5    Mostofa, G.6
  • 12
    • 84901807040 scopus 로고    scopus 로고
    • Epigenetic influences on associations between air pollutants and lung function in elderly men: the normative aging study
    • PID: 24602767
    • Lepeule J, Bind MA, Baccarelli AA, Koutrakis P, Tarantini L, Litonjua A, et al. Epigenetic influences on associations between air pollutants and lung function in elderly men: the normative aging study. Environ Health Perspect. 2014;122(6):566–72. doi:10.1289/ehp.1206458.
    • (2014) Environ Health Perspect , vol.122 , Issue.6 , pp. 566-572
    • Lepeule, J.1    Bind, M.A.2    Baccarelli, A.A.3    Koutrakis, P.4    Tarantini, L.5    Litonjua, A.6
  • 13
    • 84923010548 scopus 로고    scopus 로고
    • Infant sex-specific placental cadmium and DNA methylation associations
    • COI: 1:CAS:528:DC%2BC2MXitl2qtrc%3D, PID: 25701811
    • Mohanty AF, Farin FM, Bammler TK, MacDonald JW, Afsharinejad Z, Burbacher TM, et al. Infant sex-specific placental cadmium and DNA methylation associations. Environ Res. 2015;138:74–81. doi:10.1016/j.envres.2015.02.004.
    • (2015) Environ Res , vol.138 , pp. 74-81
    • Mohanty, A.F.1    Farin, F.M.2    Bammler, T.K.3    MacDonald, J.W.4    Afsharinejad, Z.5    Burbacher, T.M.6
  • 14
    • 84922042142 scopus 로고    scopus 로고
    • An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training
    • PID: 25484259
    • Lindholm ME, Marabita F, Gomez-Cabrero D, Rundqvist H, Ekstrom TJ, Tegner J, et al. An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training. Epigenetics. 2014;9(12):1557–69. doi:10.4161/15592294.2014.982445.
    • (2014) Epigenetics , vol.9 , Issue.12 , pp. 1557-1569
    • Lindholm, M.E.1    Marabita, F.2    Gomez-Cabrero, D.3    Rundqvist, H.4    Ekstrom, T.J.5    Tegner, J.6
  • 15
    • 84879678934 scopus 로고    scopus 로고
    • A six months exercise intervention influences the genome-wide DNA methylation pattern in human adipose tissue
    • PID: 23825961
    • Ronn T, Volkov P, Davegardh C, Dayeh T, Hall E, Olsson AH, et al. A six months exercise intervention influences the genome-wide DNA methylation pattern in human adipose tissue. PLoS Genet. 2013;9(6), e1003572. doi:10.1371/journal.pgen.1003572.
    • (2013) PLoS Genet , vol.9 , Issue.6
    • Ronn, T.1    Volkov, P.2    Davegardh, C.3    Dayeh, T.4    Hall, E.5    Olsson, A.H.6
  • 16
    • 84858055958 scopus 로고    scopus 로고
    • Acute exercise remodels promoter methylation in human skeletal muscle
    • COI: 1:CAS:528:DC%2BC38XjsFOntLY%3D, PID: 22405075
    • Barres R, Yan J, Egan B, Treebak JT, Rasmussen M, Fritz T, et al. Acute exercise remodels promoter methylation in human skeletal muscle. Cell Metab. 2012;15(3):405–11. doi:10.1016/j.cmet.2012.01.001.
    • (2012) Cell Metab , vol.15 , Issue.3 , pp. 405-411
    • Barres, R.1    Yan, J.2    Egan, B.3    Treebak, J.T.4    Rasmussen, M.5    Fritz, T.6
  • 17
    • 0022540321 scopus 로고
    • CpG-rich islands and the function of DNA methylation
    • COI: 1:CAS:528:DyaL28XktlKns78%3D, PID: 2423876
    • Bird AP. CpG-rich islands and the function of DNA methylation. Nature. 1986;321(6067):209–13.
    • (1986) Nature , vol.321 , Issue.6067 , pp. 209-213
    • Bird, A.P.1
  • 18
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
    • COI: 1:CAS:528:DC%2BD3sXhsV2kt7s%3D, PID: 12610534
    • Jaenisch R, Bird A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet. 2003;33(Suppl):245–54. doi:10.1038/ng1089.
    • (2003) Nat Genet , vol.33 , pp. 245-254
    • Jaenisch, R.1    Bird, A.2
  • 19
    • 79953706343 scopus 로고    scopus 로고
    • Tobacco-smoking-related differential DNA methylation: 27K discovery and replication
    • COI: 1:CAS:528:DC%2BC3MXksFKlsb4%3D, PID: 21457905
    • Breitling LP, Yang R, Korn B, Burwinkel B, Brenner H. Tobacco-smoking-related differential DNA methylation: 27K discovery and replication. Am J Hum Genet. 2011;88(4):450–7. doi:10.1016/j.ajhg.2011.03.003.
    • (2011) Am J Hum Genet , vol.88 , Issue.4 , pp. 450-457
    • Breitling, L.P.1    Yang, R.2    Korn, B.3    Burwinkel, B.4    Brenner, H.5
  • 20
    • 84867251622 scopus 로고    scopus 로고
    • 450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy
    • COI: 1:CAS:528:DC%2BC38Xhs12isrrJ, PID: 22851337
    • Joubert BR, Haberg SE, Nilsen RM, Wang X, Vollset SE, Murphy SK, et al. 450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy. Environ Health Perspect. 2012;120(10):1425–31. doi:10.1289/ehp.1205412.
    • (2012) Environ Health Perspect , vol.120 , Issue.10 , pp. 1425-1431
    • Joubert, B.R.1    Haberg, S.E.2    Nilsen, R.M.3    Wang, X.4    Vollset, S.E.5    Murphy, S.K.6
  • 21
    • 84855839546 scopus 로고    scopus 로고
    • Coordinated changes in AHRR methylation in lymphoblasts and pulmonary macrophages from smokers
    • PID: 22232023
    • Monick MM, Beach SR, Plume J, Sears R, Gerrard M, Brody GH, et al. Coordinated changes in AHRR methylation in lymphoblasts and pulmonary macrophages from smokers. Am J Med Genet B Neuropsychiatr Genet. 2012;159B(2):141–51. doi:10.1002/ajmg.b.32021.
    • (2012) Am J Med Genet B Neuropsychiatr Genet , vol.159B , Issue.2 , pp. 141-151
    • Monick, M.M.1    Beach, S.R.2    Plume, J.3    Sears, R.4    Gerrard, M.5    Brody, G.H.6
  • 22
    • 84863509978 scopus 로고    scopus 로고
    • Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome
    • Wan ES, Qiu W, Baccarelli A, Carey VJ, Bacherman H, Rennard SI, et al. Cigarette smoking behaviors and time since quitting are associated with differential DNA methylation across the human genome. Hum Mol Genet. 2012. doi:10.1093/hmg/dds135.
    • (2012) Hum Mol Genet
    • Wan, E.S.1    Qiu, W.2    Baccarelli, A.3    Carey, V.J.4    Bacherman, H.5    Rennard, S.I.6
  • 23
    • 84894555619 scopus 로고    scopus 로고
    • The effect of smoking on DNA methylation of peripheral blood mononuclear cells from African American women
    • PID: 24559495
    • Dogan MV, Shields B, Cutrona C, Gao L, Gibbons FX, Simons R, et al. The effect of smoking on DNA methylation of peripheral blood mononuclear cells from African American women. BMC Genomics. 2014;15:151. doi:10.1186/1471-2164-15-151.
    • (2014) BMC Genomics , vol.15 , pp. 151
    • Dogan, M.V.1    Shields, B.2    Cutrona, C.3    Gao, L.4    Gibbons, F.X.5    Simons, R.6
  • 24
    • 84899719830 scopus 로고    scopus 로고
    • Differences in smoking associated DNA methylation patterns in South Asians and Europeans
    • PID: 24485148
    • Elliott HR, Tillin T, McArdle WL, Ho K, Duggirala A, Frayling TM, et al. Differences in smoking associated DNA methylation patterns in South Asians and Europeans. Clin Epigenetics. 2014;6(1):4. doi:10.1186/1868-7083-6-4.
    • (2014) Clin Epigenetics , vol.6 , Issue.1 , pp. 4
    • Elliott, H.R.1    Tillin, T.2    McArdle, W.L.3    Ho, K.4    Duggirala, A.5    Frayling, T.M.6
  • 25
    • 84903756932 scopus 로고    scopus 로고
    • CpG sites associated with cigarette smoking: analysis of epigenome-wide data from the sister study
    • PID: 24704585
    • Harlid S, Xu Z, Panduri V, Sandler DP, Taylor JA. CpG sites associated with cigarette smoking: analysis of epigenome-wide data from the sister study. Environ Health Perspect. 2014;122(7):673–8. doi:10.1289/ehp.1307480.
    • (2014) Environ Health Perspect , vol.122 , Issue.7 , pp. 673-678
    • Harlid, S.1    Xu, Z.2    Panduri, V.3    Sandler, D.P.4    Taylor, J.A.5
  • 26
    • 0021916058 scopus 로고
    • Differences in methylation on the active and inactive human X chromosomes
    • COI: 1:CAS:528:DyaL2MXksV2jurw%3D, PID: 3000273
    • Lindsay S, Monk M, Holliday R, Huschtscha L, Davies KE, Riggs AD, et al. Differences in methylation on the active and inactive human X chromosomes. Ann Hum Genet. 1985;49(Pt 2):115–27.
    • (1985) Ann Hum Genet , vol.49 , pp. 115-127
    • Lindsay, S.1    Monk, M.2    Holliday, R.3    Huschtscha, L.4    Davies, K.E.5    Riggs, A.D.6
  • 27
    • 15244363491 scopus 로고    scopus 로고
    • The DNA sequence of the human X chromosome
    • COI: 1:CAS:528:DC%2BD2MXit1yqsrg%3D, PID: 15772651
    • Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, Muzny D, et al. The DNA sequence of the human X chromosome. Nature. 2005;434(7031):325–37. doi:10.1038/nature03440.
    • (2005) Nature , vol.434 , Issue.7031 , pp. 325-337
    • Ross, M.T.1    Grafham, D.V.2    Coffey, A.J.3    Scherer, S.4    McLay, K.5    Muzny, D.6
  • 28
    • 84901029300 scopus 로고    scopus 로고
    • X chromosome regulation: diverse patterns in development, tissues and disease
    • COI: 1:CAS:528:DC%2BC2cXmtlWlsbc%3D, PID: 24733023
    • Deng X, Berletch JB, Nguyen DK, Disteche CM. X chromosome regulation: diverse patterns in development, tissues and disease. Nat Rev Genet. 2014;15(6):367–78. doi:10.1038/nrg3687.
    • (2014) Nat Rev Genet , vol.15 , Issue.6 , pp. 367-378
    • Deng, X.1    Berletch, J.B.2    Nguyen, D.K.3    Disteche, C.M.4
  • 30
    • 84863698179 scopus 로고    scopus 로고
    • Six novel susceptibility loci for early-onset androgenetic alopecia and their unexpected association with common diseases
    • COI: 1:CAS:528:DC%2BC38XosVeksL0%3D, PID: 22693459
    • Li R, Brockschmidt FF, Kiefer AK, Stefansson H, Nyholt DR, Song K, et al. Six novel susceptibility loci for early-onset androgenetic alopecia and their unexpected association with common diseases. PLoS Genet. 2012;8(5), e1002746. doi:10.1371/journal.pgen.1002746.
    • (2012) PLoS Genet , vol.8 , Issue.5
    • Li, R.1    Brockschmidt, F.F.2    Kiefer, A.K.3    Stefansson, H.4    Nyholt, D.R.5    Song, K.6
  • 31
    • 84881260633 scopus 로고    scopus 로고
    • Robust evidence for five new Graves’ disease risk loci from a staged genome-wide association analysis
    • COI: 1:CAS:528:DC%2BC3sXhtFOksbfL, PID: 23612905
    • Zhao SX, Xue LQ, Liu W, Gu ZH, Pan CM, Yang SY, et al. Robust evidence for five new Graves’ disease risk loci from a staged genome-wide association analysis. Hum Mol Genet. 2013;22(16):3347–62. doi:10.1093/hmg/ddt183.
    • (2013) Hum Mol Genet , vol.22 , Issue.16 , pp. 3347-3362
    • Zhao, S.X.1    Xue, L.Q.2    Liu, W.3    Gu, Z.H.4    Pan, C.M.5    Yang, S.Y.6
  • 32
    • 84894288992 scopus 로고    scopus 로고
    • Genetics of rheumatoid arthritis contributes to biology and drug discovery
    • COI: 1:CAS:528:DC%2BC2cXivVCjs78%3D, PID: 24390342
    • Okada Y, Wu D, Trynka G, Raj T, Terao C, Ikari K, et al. Genetics of rheumatoid arthritis contributes to biology and drug discovery. Nature. 2014;506(7488):376–81. doi:10.1038/nature12873.
    • (2014) Nature , vol.506 , Issue.7488 , pp. 376-381
    • Okada, Y.1    Wu, D.2    Trynka, G.3    Raj, T.4    Terao, C.5    Ikari, K.6
  • 33
    • 79960924160 scopus 로고    scopus 로고
    • Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study
    • COI: 1:CAS:528:DC%2BC3MXos1Omsrg%3D, PID: 21743467
    • Kote-Jarai Z, Olama AA, Giles GG, Severi G, Schleutker J, Weischer M, et al. Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study. Nat Genet. 2011;43(8):785–91. doi:10.1038/ng.882.
    • (2011) Nat Genet , vol.43 , Issue.8 , pp. 785-791
    • Kote-Jarai, Z.1    Olama, A.A.2    Giles, G.G.3    Severi, G.4    Schleutker, J.5    Weischer, M.6
  • 34
    • 84872033833 scopus 로고    scopus 로고
    • A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans
    • COI: 1:CAS:528:DC%2BC3sXlt1KjsQ%3D%3D, PID: 22961080
    • Li H, Gan W, Lu L, Dong X, Han X, Hu C, et al. A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans. Diabetes. 2013;62(1):291–8. doi:10.2337/db12-0454.
    • (2013) Diabetes , vol.62 , Issue.1 , pp. 291-298
    • Li, H.1    Gan, W.2    Lu, L.3    Dong, X.4    Han, X.5    Hu, C.6
  • 35
    • 84878476011 scopus 로고    scopus 로고
    • Genome-wide association analysis of red blood cell traits in African Americans: the COGENT network
    • COI: 1:CAS:528:DC%2BC3sXnvVCqurs%3D, PID: 23446634
    • Chen Z, Tang H, Qayyum R, Schick UM, Nalls MA, Handsaker R, et al. Genome-wide association analysis of red blood cell traits in African Americans: the COGENT network. Hum Mol Genet. 2013;22(12):2529–38. doi:10.1093/hmg/ddt087.
    • (2013) Hum Mol Genet , vol.22 , Issue.12 , pp. 2529-2538
    • Chen, Z.1    Tang, H.2    Qayyum, R.3    Schick, U.M.4    Nalls, M.A.5    Handsaker, R.6
  • 36
    • 0032830639 scopus 로고    scopus 로고
    • Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2
    • COI: 1:CAS:528:DyaK1MXmtlOhtbo%3D, PID: 10508514
    • Amir RE, Van den Veyver IB, Wan M, Tran CQ, Francke U, Zoghbi HY. Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2. Nat Genet. 1999;23(2):185–8. doi:10.1038/13810.
    • (1999) Nat Genet , vol.23 , Issue.2 , pp. 185-188
    • Amir, R.E.1    Van den Veyver, I.B.2    Wan, M.3    Tran, C.Q.4    Francke, U.5    Zoghbi, H.Y.6
  • 37
    • 77349102500 scopus 로고    scopus 로고
    • The effect of smoking on MAOA promoter methylation in DNA prepared from lymphoblasts and whole blood
    • COI: 1:CAS:528:DC%2BC3cXktF2nsL0%3D, PID: 19777560
    • Philibert RA, Beach SR, Gunter TD, Brody GH, Madan A, Gerrard M. The effect of smoking on MAOA promoter methylation in DNA prepared from lymphoblasts and whole blood. Am J Med Genet B Neuropsychiatr Genet. 2010;153B(2):619–28. doi:10.1002/ajmg.b.31031.
    • (2010) Am J Med Genet B Neuropsychiatr Genet , vol.153B , Issue.2 , pp. 619-628
    • Philibert, R.A.1    Beach, S.R.2    Gunter, T.D.3    Brody, G.H.4    Madan, A.5    Gerrard, M.6
  • 38
    • 77953397656 scopus 로고    scopus 로고
    • Comparison of the DNA methylation profiles of human peripheral blood cells and transformed B-lymphocytes
    • COI: 1:CAS:528:DC%2BC3cXmtV2js7o%3D, PID: 20238126
    • Sun YV, Turner ST, Smith JA, Hammond PI, Lazarus A, Van De Rostyne JL, et al. Comparison of the DNA methylation profiles of human peripheral blood cells and transformed B-lymphocytes. Hum Genet. 2010;127(6):651–8. doi:10.1007/s00439-010-0810-y.
    • (2010) Hum Genet , vol.127 , Issue.6 , pp. 651-658
    • Sun, Y.V.1    Turner, S.T.2    Smith, J.A.3    Hammond, P.I.4    Lazarus, A.5    Van De Rostyne, J.L.6
  • 39
    • 78651552406 scopus 로고    scopus 로고
    • DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
    • COI: 1:CAS:528:DC%2BC3MXivVymtrg%3D, PID: 21251332
    • Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, et al. DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines. Genome Biol. 2011;12(1):R10. doi:10.1186/gb-2011-12-1-r10.
    • (2011) Genome Biol , vol.12 , Issue.1 , pp. R10
    • Bell, J.T.1    Pai, A.A.2    Pickrell, J.K.3    Gaffney, D.J.4    Pique-Regi, R.5    Degner, J.F.6
  • 40
    • 84903796377 scopus 로고    scopus 로고
    • X-chromosome genetic association test accounting for X-inactivation, skewed X-inactivation, and escape from X-inactivation
    • PID: 25043884
    • Wang J, Yu R, Shete S. X-chromosome genetic association test accounting for X-inactivation, skewed X-inactivation, and escape from X-inactivation. Genet Epidemiol. 2014;38(6):483–93. doi:10.1002/gepi.21814.
    • (2014) Genet Epidemiol , vol.38 , Issue.6 , pp. 483-493
    • Wang, J.1    Yu, R.2    Shete, S.3
  • 41
    • 84857062545 scopus 로고    scopus 로고
    • DNA methylation signatures in development and aging of the human prefrontal cortex
    • COI: 1:CAS:528:DC%2BC38XhvVGms74%3D, PID: 22305529
    • Numata S, Ye T, Hyde TM, Guitart-Navarro X, Tao R, Wininger M, et al. DNA methylation signatures in development and aging of the human prefrontal cortex. Am J Hum Genet. 2012;90(2):260–72. doi:10.1016/j.ajhg.2011.12.020.
    • (2012) Am J Hum Genet , vol.90 , Issue.2 , pp. 260-272
    • Numata, S.1    Ye, T.2    Hyde, T.M.3    Guitart-Navarro, X.4    Tao, R.5    Wininger, M.6
  • 42
    • 79954629131 scopus 로고    scopus 로고
    • OpenMx: an open source extended structural equation modeling framework
    • PID: 23258944
    • Boker S, Neale M, Maes H, Wilde M, Spiegel M, Brick T, et al. OpenMx: an open source extended structural equation modeling framework. Psychometrika. 2011;76(2):306–17. doi:10.1007/s11336-010-9200-6.
    • (2011) Psychometrika , vol.76 , Issue.2 , pp. 306-317
    • Boker, S.1    Neale, M.2    Maes, H.3    Wilde, M.4    Spiegel, M.5    Brick, T.6
  • 43
    • 50949086575 scopus 로고    scopus 로고
    • Role of the transcriptional corepressor Bcor in embryonic stem cell differentiation and early embryonic development
    • PID: 18795143
    • Wamstad JA, Corcoran CM, Keating AM, Bardwell VJ. Role of the transcriptional corepressor Bcor in embryonic stem cell differentiation and early embryonic development. PLoS One. 2008;3(7), e2814. doi:10.1371/journal.pone.0002814.
    • (2008) PLoS One , vol.3 , Issue.7
    • Wamstad, J.A.1    Corcoran, C.M.2    Keating, A.M.3    Bardwell, V.J.4
  • 44
    • 0034661112 scopus 로고    scopus 로고
    • BCoR, a novel corepressor involved in BCL-6 repression
    • COI: 1:CAS:528:DC%2BD3cXltFCru78%3D, PID: 10898795
    • Huynh KD, Fischle W, Verdin E, Bardwell VJ. BCoR, a novel corepressor involved in BCL-6 repression. Genes Dev. 2000;14(14):1810–23.
    • (2000) Genes Dev , vol.14 , Issue.14 , pp. 1810-1823
    • Huynh, K.D.1    Fischle, W.2    Verdin, E.3    Bardwell, V.J.4
  • 45
    • 83055161507 scopus 로고    scopus 로고
    • Whole-exome sequencing identifies somatic mutations of BCOR in acute myeloid leukemia with normal karyotype
    • COI: 1:CAS:528:DC%2BC3MXhs1ansbrP, PID: 22012066
    • Grossmann V, Tiacci E, Holmes AB, Kohlmann A, Martelli MP, Kern W, et al. Whole-exome sequencing identifies somatic mutations of BCOR in acute myeloid leukemia with normal karyotype. Blood. 2011;118(23):6153–63. doi:10.1182/blood-2011-07-365320.
    • (2011) Blood , vol.118 , Issue.23 , pp. 6153-6163
    • Grossmann, V.1    Tiacci, E.2    Holmes, A.B.3    Kohlmann, A.4    Martelli, M.P.5    Kern, W.6
  • 47
    • 84861211156 scopus 로고    scopus 로고
    • The glucocorticoid-induced leucine zipper (gilz/Tsc22d3-2) gene locus plays a crucial role in male fertility
    • COI: 1:CAS:528:DC%2BC38XnsVKltLk%3D, PID: 22556341
    • Suarez PE, Rodriguez EG, Soundararajan R, Merillat AM, Stehle JC, Rotman S, et al. The glucocorticoid-induced leucine zipper (gilz/Tsc22d3-2) gene locus plays a crucial role in male fertility. Mol Endocrinol. 2012;26(6):1000–13. doi:10.1210/me.2011-1249.
    • (2012) Mol Endocrinol , vol.26 , Issue.6 , pp. 1000-1013
    • Suarez, P.E.1    Rodriguez, E.G.2    Soundararajan, R.3    Merillat, A.M.4    Stehle, J.C.5    Rotman, S.6
  • 48
    • 79951831638 scopus 로고    scopus 로고
    • Epigenetic changes in individuals with arsenicosis
    • COI: 1:CAS:528:DC%2BC3MXhsFalsr0%3D, PID: 21291286
    • Smeester L, Rager JE, Bailey KA, Guan X, Smith N, Garcia-Vargas G, et al. Epigenetic changes in individuals with arsenicosis. Chem Res Toxicol. 2011;24(2):165–7. doi:10.1021/tx1004419.
    • (2011) Chem Res Toxicol , vol.24 , Issue.2 , pp. 165-167
    • Smeester, L.1    Rager, J.E.2    Bailey, K.A.3    Guan, X.4    Smith, N.5    Garcia-Vargas, G.6
  • 49
    • 67049137380 scopus 로고    scopus 로고
    • TSC-22 contributes to hematopoietic precursor cell proliferation and repopulation and is epigenetically silenced in large granular lymphocyte leukemia
    • COI: 1:CAS:528:DC%2BD1MXntVeruro%3D, PID: 19329776
    • Yu J, Ershler M, Yu L, Wei M, Hackanson B, Yokohama A, et al. TSC-22 contributes to hematopoietic precursor cell proliferation and repopulation and is epigenetically silenced in large granular lymphocyte leukemia. Blood. 2009;113(22):5558–67. doi:10.1182/blood-2009-02-205732.
    • (2009) Blood , vol.113 , Issue.22 , pp. 5558-5567
    • Yu, J.1    Ershler, M.2    Yu, L.3    Wei, M.4    Hackanson, B.5    Yokohama, A.6
  • 52
    • 84900824657 scopus 로고    scopus 로고
    • Reference-free cell mixture adjustments in analysis of DNA methylation data
    • COI: 1:CAS:528:DC%2BC2cXnslOitL4%3D, PID: 24451622
    • Houseman EA, Molitor J, Marsit CJ. Reference-free cell mixture adjustments in analysis of DNA methylation data. Bioinformatics. 2014;30(10):1431–9. doi:10.1093/bioinformatics/btu029.
    • (2014) Bioinformatics , vol.30 , Issue.10 , pp. 1431-1439
    • Houseman, E.A.1    Molitor, J.2    Marsit, C.J.3
  • 54
    • 33751349817 scopus 로고    scopus 로고
    • Accurate and reliable high-throughput detection of copy number variation in the human genome
    • COI: 1:CAS:528:DC%2BD28XhtlWgsrfL, PID: 17122085
    • Fiegler H, Redon R, Andrews D, Scott C, Andrews R, Carder C, et al. Accurate and reliable high-throughput detection of copy number variation in the human genome. Genome Res. 2006;16(12):1566–74. doi:10.1101/gr.5630906.
    • (2006) Genome Res , vol.16 , Issue.12 , pp. 1566-1574
    • Fiegler, H.1    Redon, R.2    Andrews, D.3    Scott, C.4    Andrews, R.5    Carder, C.6
  • 55
    • 33846563409 scopus 로고    scopus 로고
    • Why most published research findings are false
    • PID: 16060722
    • Ioannidis JP. Why most published research findings are false. PLoS Med. 2005;2(8), e124. doi:10.1371/journal.pmed.0020124.
    • (2005) PLoS Med , vol.2 , Issue.8
    • Ioannidis, J.P.1
  • 56
    • 85018215032 scopus 로고    scopus 로고
    • Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci
    • COI: 1:CAS:528:DC%2BC2MXhsVyls7rN, PID: 25935004
    • Demerath EW, Guan W, Grove ML, Aslibekyan S, Mendelson M, Zhou YH, et al. Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci. Hum Mol Genet. 2015;24(15):4464–79. doi:10.1093/hmg/ddv161.
    • (2015) Hum Mol Genet , vol.24 , Issue.15 , pp. 4464-4479
    • Demerath, E.W.1    Guan, W.2    Grove, M.L.3    Aslibekyan, S.4    Mendelson, M.5    Zhou, Y.H.6
  • 57
    • 84906050534 scopus 로고    scopus 로고
    • Epigenome-wide association study of fasting blood lipids in the genetics of lipid lowering drugs and diet network study
    • Irvin MR, Zhi D, Joehanes R, Mendelson M, Aslibekyan S, Claas SA, et al. Epigenome-wide association study of fasting blood lipids in the genetics of lipid lowering drugs and diet network study. Circulation. 2014. doi:10.1161/CIRCULATIONAHA.114.009158.
    • (2014) Circulation
    • Irvin, M.R.1    Zhi, D.2    Joehanes, R.3    Mendelson, M.4    Aslibekyan, S.5    Claas, S.A.6
  • 59
    • 84943766278 scopus 로고    scopus 로고
    • Power and sample size estimation for epigenome-wide association scans to detect differential DNA methylation
    • PID: 25972603
    • Tsai PC, Bell JT. Power and sample size estimation for epigenome-wide association scans to detect differential DNA methylation. Int J Epidemiol. 2015. doi:10.1093/ije/dyv041.
    • (2015) Int J Epidemiol
    • Tsai, P.C.1    Bell, J.T.2
  • 61
    • 49749091153 scopus 로고    scopus 로고
    • Association of major depressive disorder with serum myeloperoxidase and other markers of inflammation: a twin study
    • COI: 1:CAS:528:DC%2BD1cXhtVensr7K, PID: 18514165
    • Vaccarino V, Brennan ML, Miller AH, Bremner JD, Ritchie JC, Lindau F, et al. Association of major depressive disorder with serum myeloperoxidase and other markers of inflammation: a twin study. Biol Psychiatry. 2008;64(6):476–83. doi:10.1016/j.biopsych.2008.04.023.
    • (2008) Biol Psychiatry , vol.64 , Issue.6 , pp. 476-483
    • Vaccarino, V.1    Brennan, M.L.2    Miller, A.H.3    Bremner, J.D.4    Ritchie, J.C.5    Lindau, F.6
  • 62
    • 52049085056 scopus 로고    scopus 로고
    • Depressive symptoms and heart rate variability: evidence for a shared genetic substrate in a study of twins
    • PID: 18606724
    • Vaccarino V, Lampert R, Bremner JD, Lee F, Su S, Maisano C, et al. Depressive symptoms and heart rate variability: evidence for a shared genetic substrate in a study of twins. Psychosom Med. 2008;70(6):628–36. doi:10.1097/PSY.0b013e31817bcc9e.
    • (2008) Psychosom Med , vol.70 , Issue.6 , pp. 628-636
    • Vaccarino, V.1    Lampert, R.2    Bremner, J.D.3    Lee, F.4    Su, S.5    Maisano, C.6
  • 63
    • 84922021718 scopus 로고    scopus 로고
    • Cigarette smoking reduces DNA methylation levels at multiple genomic loci but the effect is partially reversible upon cessation
    • PID: 25424692
    • Tsaprouni LG, Yang TP, Bell J, Dick KJ, Kanoni S, Nisbet J, et al. Cigarette smoking reduces DNA methylation levels at multiple genomic loci but the effect is partially reversible upon cessation. Epigenetics. 2014;9(10):1382–96. doi:10.4161/15592294.2014.969637.
    • (2014) Epigenetics , vol.9 , Issue.10 , pp. 1382-1396
    • Tsaprouni, L.G.1    Yang, T.P.2    Bell, J.3    Dick, K.J.4    Kanoni, S.5    Nisbet, J.6
  • 64
    • 84873576566 scopus 로고    scopus 로고
    • Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis
    • COI: 1:CAS:528:DC%2BC3sXhtFSgurs%3D, PID: 23334450
    • Liu Y, Aryee MJ, Padyukov L, Fallin MD, Hesselberg E, Runarsson A, et al. Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis. Nat Biotechnol. 2013;31(2):142–7. doi:10.1038/nbt.2487.
    • (2013) Nat Biotechnol , vol.31 , Issue.2 , pp. 142-147
    • Liu, Y.1    Aryee, M.J.2    Padyukov, L.3    Fallin, M.D.4    Hesselberg, E.5    Runarsson, A.6
  • 65
    • 84874353239 scopus 로고    scopus 로고
    • Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
    • COI: 1:CAS:528:DC%2BC3sXkvVGgtrs%3D, PID: 23314698
    • Chen YA, Lemire M, Choufani S, Butcher DT, Grafodatskaya D, Zanke BW, et al. Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray. Epigenetics. 2013;8(2):203–9. doi:10.4161/epi.23470.
    • (2013) Epigenetics , vol.8 , Issue.2 , pp. 203-209
    • Chen, Y.A.1    Lemire, M.2    Choufani, S.3    Butcher, D.T.4    Grafodatskaya, D.5    Zanke, B.W.6
  • 66
    • 78649475003 scopus 로고    scopus 로고
    • Comparison of beta-value and M-value methods for quantifying methylation levels by microarray analysis
    • COI: 1:CAS:528:DC%2BC3cXhsFChu7nM
    • Du P, Zhang X, Huang CC, Jafari N, Kibbe WA, Hou L, et al. Comparison of beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinf. 2010;11(1):587.
    • (2010) BMC Bioinf , vol.11 , Issue.1 , pp. 587
    • Du, P.1    Zhang, X.2    Huang, C.C.3    Jafari, N.4    Kibbe, W.A.5    Hou, L.6
  • 67
    • 43149098062 scopus 로고    scopus 로고
    • Comprehensive high-throughput arrays for relative methylation (CHARM)
    • COI: 1:CAS:528:DC%2BD1cXlslChsLw%3D, PID: 18316654
    • Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, et al. Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Res. 2008;18(5):780–90.
    • (2008) Genome Res , vol.18 , Issue.5 , pp. 780-790
    • Irizarry, R.A.1    Ladd-Acosta, C.2    Carvalho, B.3    Wu, H.4    Brandenburg, S.A.5    Jeddeloh, J.A.6
  • 68
    • 0002643986 scopus 로고
    • The dip test of unimodality
    • Hartigan JA, Hartigan PM. The dip test of unimodality. Ann Stat. 1985;13:70–84.
    • (1985) Ann Stat , vol.13 , pp. 70-84
    • Hartigan, J.A.1    Hartigan, P.M.2
  • 69
    • 0001218902 scopus 로고
    • Computation of the dip statistic to test for unimodality
    • Hartigan PM. Computation of the dip statistic to test for unimodality. J R Stat Soc: Ser C: Appl Stat. 1985;34(3):320–5. doi:10.2307/2347485.
    • (1985) J R Stat Soc: Ser C: Appl Stat , vol.34 , Issue.3 , pp. 320-325
    • Hartigan, P.M.1
  • 70
    • 84897524021 scopus 로고    scopus 로고
    • Gene-specific DNA methylation association with serum levels of C-reactive protein in African Americans
    • COI: 1:CAS:528:DC%2BC3sXhtlGju7%2FM, PID: 23977389
    • Sun YV, Lazarus A, Smith JA, Chuang YH, Zhao W, Turner ST, et al. Gene-specific DNA methylation association with serum levels of C-reactive protein in African Americans. PLoS One. 2013;8(8), e73480. doi:10.1371/journal.pone.0073480.
    • (2013) PLoS One , vol.8 , Issue.8
    • Sun, Y.V.1    Lazarus, A.2    Smith, J.A.3    Chuang, Y.H.4    Zhao, W.5    Turner, S.T.6
  • 71
    • 84983079100 scopus 로고    scopus 로고
    • Epigenomic indicators of age in African Americans
    • 2161-1041.100013
    • Smith J, Zagel A, Sun Y, Dolinoy D, Bielak L. Epigenomic indicators of age in African Americans. Hereditary Genet. 2014;3(137):2161-1041.100013.
    • (2014) Hereditary Genet , vol.3 , Issue.137
    • Smith, J.1    Zagel, A.2    Sun, Y.3    Dolinoy, D.4    Bielak, L.5
  • 72
    • 41049093347 scopus 로고
    • The combination of estimates from different experiments
    • Cochran WG. The combination of estimates from different experiments. Biometrics. 1954;10(Journal Article):101–29.
    • (1954) Biometrics , vol.10 , Issue.Journal Article , pp. 101-129
    • Cochran, W.G.1


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