메뉴 건너뛰기




Volumn 291, Issue 2, 2016, Pages 935-941

Non-functional plastid ndh gene fragments are present in the nuclear genome of Norway spruce (Picea abies L. karsch): Insights from in silico analysis of nuclear and organellar genomes

Author keywords

Ndh genes; Norway spruce gene transfer; Organellar genomes; Picea abies

Indexed keywords

REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE (UBIQUINONE);

EID: 84982931625     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-015-1159-7     Document Type: Article
Times cited : (19)

References (43)
  • 1
    • 79957873740 scopus 로고    scopus 로고
    • Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)
    • Blazier J, Guisinger MM, Jansen RK (2011) Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae). Plant Mol Biol 76:263–272
    • (2011) Plant Mol Biol , vol.76 , pp. 263-272
    • Blazier, J.1    Guisinger, M.M.2    Jansen, R.K.3
  • 2
    • 45549100129 scopus 로고    scopus 로고
    • Reconstructing evolution: Gene transfer from plastids to the nucleus
    • Bock R, Timmis JN (2008) Reconstructing evolution: gene transfer from plastids to the nucleus. BioEssays 30:556–566
    • (2008) Bioessays , vol.30 , pp. 556-566
    • Bock, R.1    Timmis, J.N.2
  • 3
    • 67349254201 scopus 로고    scopus 로고
    • Loss of all plastid ndh genes in Gnetales and conifers: Extent and evolutionary significance for the seed plant phylogeny
    • Braukmann TWA, Kuzmina M, Stefanovic S (2009) Loss of all plastid ndh genes in Gnetales and conifers: extent and evolutionary significance for the seed plant phylogeny. Curr Genet 55:323–337
    • (2009) Curr Genet , vol.55 , pp. 323-337
    • Braukmann, T.W.A.1    Kuzmina, M.2    Stefanovic, S.3
  • 4
    • 84874682437 scopus 로고    scopus 로고
    • Plastid genome evolution across the genus Cuscuta (Convolvulaceae): Two clades within subgenus Grammica exhibit extensive gene loss
    • Braukmann T, Kuzmina M, Stefanovic S (2013) Plastid genome evolution across the genus Cuscuta (Convolvulaceae): two clades within subgenus Grammica exhibit extensive gene loss. J Exp Bot 64:977–989
    • (2013) J Exp Bot , vol.64 , pp. 977-989
    • Braukmann, T.1    Kuzmina, M.2    Stefanovic, S.3
  • 5
    • 1542314443 scopus 로고    scopus 로고
    • Photosynthetic evolution in parasitic plants: Insight from the chloroplast genome
    • Bungard RA (2004) Photosynthetic evolution in parasitic plants: insight from the chloroplast genome. BioEssays 26:235–247
    • (2004) Bioessays , vol.26 , pp. 235-247
    • Bungard, R.A.1
  • 6
    • 0033978632 scopus 로고    scopus 로고
    • Chlororespiration and poising of cyclic electron transport—plastoquinone as electron transporter between thylakoid NADH dehydrogenase and peroxidase
    • Casano LM, Zapata JM, Martin M, Sabater B (2000) Chlororespiration and poising of cyclic electron transport—plastoquinone as electron transporter between thylakoid NADH dehydrogenase and peroxidase. J Biol Chem 275:942–948
    • (2000) J Biol Chem , vol.275 , pp. 942-948
    • Casano, L.M.1    Zapata, J.M.2    Martin, M.3    Sabater, B.4
  • 7
    • 30744447444 scopus 로고    scopus 로고
    • The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): Comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications
    • Chang CC, Lin HC, Lin IP, Chow TY, Chen HH, Chen WH, Cheng CH, Lin CY, Liu SM, Chang CC, Chaw SM (2006) The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications. Mol Biol Evol 23:279–291
    • (2006) Mol Biol Evol , vol.23 , pp. 279-291
    • Chang, C.C.1    Lin, H.C.2    Lin, I.P.3    Chow, T.Y.4    Chen, H.H.5    Chen, W.H.6    Cheng, C.H.7    Lin, C.Y.8    Liu, S.M.9    Chang, C.C.10    Chaw, S.M.11
  • 8
    • 0034636037 scopus 로고    scopus 로고
    • Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers
    • Chaw SM, Parkinson CL, Cheng YC, Vincent TM, Palmer JD (2000) Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers. Proc Natl Acad Sci USA 97:4086–4091
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 4086-4091
    • Chaw, S.M.1    Parkinson, C.L.2    Cheng, Y.C.3    Vincent, T.M.4    Palmer, J.D.5
  • 9
    • 79957572067 scopus 로고    scopus 로고
    • Rampant gene loss in the underground orchid Rhizan-thella gardneri highlights evolutionary constraints on plastid genomes
    • Delannoy E, Fujii S, des Francs-Small CC, Brundrett M, Small I (2011) Rampant gene loss in the underground orchid Rhizan-thella gardneri highlights evolutionary constraints on plastid genomes. Mol Biol Evol 28:2077–2086
    • (2011) Mol Biol Evol , vol.28 , pp. 2077-2086
    • Delannoy, E.1    Fujii, S.2    Des Francs-Small, C.C.3    Brundrett, M.4    Small, I.5
  • 11
    • 0028011752 scopus 로고
    • Functional loss of all Ndh genes in an otherwise relatively unaltered plastid genome of the Holoparasitic flowering plant Cuscuta reflexa
    • Haberhausen G, Zetsche K (1994) Functional loss of all Ndh genes in an otherwise relatively unaltered plastid genome of the Holoparasitic flowering plant Cuscuta reflexa. Plant Mol Biol 24:217–222
    • (1994) Plant Mol Biol , vol.24 , pp. 217-222
    • Haberhausen, G.1    Zetsche, K.2
  • 12
    • 50849113730 scopus 로고    scopus 로고
    • From chloroplasts to “cryptic” plastids: Evolution of plastid genomes in parasitic plants
    • Krause K (2008) From chloroplasts to “cryptic” plastids: evolution of plastid genomes in parasitic plants. Curr Genet 54:111–121
    • (2008) Curr Genet , vol.54 , pp. 111-121
    • Krause, K.1
  • 13
    • 84876782990 scopus 로고    scopus 로고
    • Pseudogenes: Pseudo or real functional elements?
    • Li W, Yang W, Wang XJ (2013) Pseudogenes: pseudo or real functional elements? J Genet Genomics 40:171–177
    • (2013) J Genet Genomics , vol.40 , pp. 171-177
    • Li, W.1    Yang, W.2    Wang, X.J.3
  • 15
    • 84858054460 scopus 로고    scopus 로고
    • Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis
    • Logacheva MD, Schelkunov MI, Penin AA (2011) Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis. Genome Biol Evol 3:1296–1303
    • (2011) Genome Biol Evol , vol.3 , pp. 1296-1303
    • Logacheva, M.D.1    Schelkunov, M.I.2    Penin, A.A.3
  • 16
    • 0029160870 scopus 로고
    • Complete sequence of the maize chloroplast genome—gene content, hot-spots of divergence and fine-tuning of genetic information by transcript editing
    • Maier RM, Neckermann K, Igloi GL, Kossel H (1995) Complete sequence of the maize chloroplast genome—gene content, hot-spots of divergence and fine-tuning of genetic information by transcript editing. J Mol Biol 251:614–628
    • (1995) J Mol Biol , vol.251 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kossel, H.4
  • 17
    • 3242887157 scopus 로고    scopus 로고
    • CD-search: Protein domain annotations on the fly
    • Marchler-Bauer A, Bryant SH (2004) CD-search: protein domain annotations on the fly. Nucleic Acids Res 32:W327–W331
    • (2004) Nucleic Acids Res , vol.32 , pp. W327-W331
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 18
    • 0042307520 scopus 로고    scopus 로고
    • Gene transfer from organelles to the nucleus: Frequent and in big chunks
    • Martin W (2003) Gene transfer from organelles to the nucleus: frequent and in big chunks. Proc Natl Acad Sci USA 100:8612–8614
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8612-8614
    • Martin, W.1
  • 19
    • 77954143469 scopus 로고    scopus 로고
    • Plastid ndh genes in plant evolution
    • Martin M, Sabater B (2010) Plastid ndh genes in plant evolution. Plant Physiol Biochem 48:636–645
    • (2010) Plant Physiol Biochem , vol.48 , pp. 636-645
    • Martin, M.1    Sabater, B.2
  • 21
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 99:12246–12251
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6    Leister, D.7    Stoebe, B.8    Hasegawa, M.9    Penny, D.10
  • 22
    • 44049089159 scopus 로고    scopus 로고
    • The complete plastid genome sequence of Welwitschia mirabilis: An unusually compact plastome with accelerated divergence rates
    • Mccoy SR, Kuehl JV, Boore JL, Raubeson LA (2008) The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates. BMC Evol Biol 8:130
    • (2008) BMC Evol Biol , vol.8 , pp. 130
    • McCoy, S.R.1    Kuehl, J.V.2    Boore, J.L.3    Raubeson, L.A.4
  • 24
    • 0029854243 scopus 로고    scopus 로고
    • The ndhF chloroplast gene detected in all vascular plant divisions
    • Neyland R, Urbatsch LE (1996) The ndhF chloroplast gene detected in all vascular plant divisions. Planta 200:273–277
    • (1996) Planta , vol.200 , pp. 273-277
    • Neyland, R.1    Urbatsch, L.E.2
  • 25
    • 0036456491 scopus 로고    scopus 로고
    • The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants
    • Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol Genet Genomics 268:434–445
    • (2002) Mol Genet Genomics , vol.268 , pp. 434-445
    • Notsu, Y.1    Masood, S.2    Nishikawa, T.3    Kubo, N.4    Akiduki, G.5    Nakazono, M.6    Hirai, A.7    Kadowaki, K.8
  • 27
    • 0001856419 scopus 로고
    • Plastid chromosomes: Structure and evolution
    • Palmer JD (1991) Plastid chromosomes: structure and evolution. Mol Biol Plast 7:5–53
    • (1991) Mol Biol Plast , vol.7 , pp. 5-53
    • Palmer, J.D.1
  • 28
    • 84859367618 scopus 로고    scopus 로고
    • Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding
    • Pan IC, Liao DC, Wu FH, Daniell H, Singh ND, Chang C, Shih MC, Chan MT, Lin CS (2012) Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding. Plos One 7:e34738
    • (2012) Plos One , vol.7
    • Pan, I.C.1    Liao, D.C.2    Wu, F.H.3    Daniell, H.4    Singh, N.D.5    Chang, C.6    Shih, M.C.7    Chan, M.T.8    Lin, C.S.9
  • 30
    • 84879832869 scopus 로고    scopus 로고
    • The plastid genome of Najas flexilis: Adaptation to submersed environments is accompanied by the complete loss of the NDH complex in an aquatic angiosperm
    • Peredo EL, King UM, Les DH (2012) The plastid genome of Najas flexilis: adaptation to submersed environments is accompanied by the complete loss of the NDH complex in an aquatic angiosperm. Plos One 8:e68591
    • (2012) Plos One , vol.8
    • Peredo, E.L.1    King, U.M.2    Les, D.H.3
  • 32
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • Rokas A, Holland PW (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15:454–459
    • (2000) Trends Ecol Evol , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.2
  • 34
    • 0032477715 scopus 로고    scopus 로고
    • The plastid ndh genes code for an NADH-specific dehydrogenase: Isolation of a complex I analogue from pea thylakoid membranes
    • Sazanov LA, Burrows PA, Nixon PJ (1998) The plastid ndh genes code for an NADH-specific dehydrogenase: isolation of a complex I analogue from pea thylakoid membranes. Proc Natl Acad Sci USA 95:1319–1324
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 1319-1324
    • Sazanov, L.A.1    Burrows, P.A.2    Nixon, P.J.3
  • 36
    • 34250629241 scopus 로고    scopus 로고
    • Complete nucleotide sequence of the freshwater unicellular cyanobacte-rium Synechococcus elongatus PCC 6301 chromosome: Gene content and organization
    • Sugita C, Ogata K, Shikata M, Jikuya H, Takano J, Furumichi M, Kanehisa M, Omata T, Sugiura M, Sugita M (2007) Complete nucleotide sequence of the freshwater unicellular cyanobacte-rium Synechococcus elongatus PCC 6301 chromosome: gene content and organization. Photosynth Res 93:55–67
    • (2007) Photosynth Res , vol.93 , pp. 55-67
    • Sugita, C.1    Ogata, K.2    Shikata, M.3    Jikuya, H.4    Takano, J.5    Furumichi, M.6    Kanehisa, M.7    Omata, T.8    Sugiura, M.9    Sugita, M.10
  • 37
    • 84862278781 scopus 로고    scopus 로고
    • Pseudogenes
    • Tutar Y (2012) Pseudogenes. Comp Funct Genomics 2012:424-526
    • (2012) Comp Funct Genomics , vol.2012 , pp. 424-526
    • Tutar, Y.1
  • 38
    • 0028043489 scopus 로고
    • Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black Pine Pinus thunbergii
    • Wakasugi T, Tsudzuki J, Ito S, Nakashima K, Tsudzuki T, Sugiura M (1994) Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black Pine Pinus thunbergii. Proc Natl Acad Sci USA 91:9794–9798
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9794-9798
    • Wakasugi, T.1    Tsudzuki, J.2    Ito, S.3    Nakashima, K.4    Tsudzuki, T.5    Sugiura, M.6
  • 40
    • 0026447426 scopus 로고
    • Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant
    • Wolfe KH, Morden CW, Palmer JD (1992) Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. Proc Natl Acad Sci USA 89:10648–10652
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10648-10652
    • Wolfe, K.H.1    Morden, C.W.2    Palmer, J.D.3
  • 41
    • 34548108492 scopus 로고    scopus 로고
    • Chloroplast genome (CpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: Insights into cpDNA evolution and phylogeny of extant seed plants
    • Wu CS, Wang YN, Liu SM, Chaw SM (2007) Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plants. Mol Biol Evol 24:1366–1379
    • (2007) Mol Biol Evol , vol.24 , pp. 1366-1379
    • Wu, C.S.1    Wang, Y.N.2    Liu, S.M.3    Chaw, S.M.4
  • 42
    • 77950794398 scopus 로고    scopus 로고
    • Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae
    • Wu FH, Chan MT, Liao DC, Hsu CT, Lee YW, Daniell H, Duvall MR, Lin CS (2010) Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae. BMC Plant Biol 10:68
    • (2010) BMC Plant Biol , vol.10 , pp. 68
    • Wu, F.H.1    Chan, M.T.2    Liao, D.C.3    Hsu, C.T.4    Lee, Y.W.5    Daniell, H.6    Duvall, M.R.7    Lin, C.S.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.