The ndhF chloroplast gene detected in all vascular plant divisions

Planta

Volumn 200, Issue 2, 1996, Pages 273-277

  Neyland, Ray ^a   Urbatsch, Lowell E ^b  

^a MCNEESE STATE UNIVERSITY   (United States)

^b LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

Chloroplastic DNA; Gymnosperm; NADH dehydrogenase F; Pinus; Vascular Plants

Indexed keywords

CONIFEROPHYTA; EQUISETOPHYTA; FILICOPHYTA; GINKGOPHYTA; GNETOPHYTA; GYMNOSPERMAE; NICOTIANA TABACUM; PSILOTOPHYTA; TRACHEOPHYTA;

EID: 0029854243     PISSN: 00320935     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00208318     Document Type: Article

References (18)

1. Clegg MT, Zurawski G (1992) Chloroplast DNA and the study of plant phylogeny: present status and future prospects. In: Soltis PS, Soltis DE, Doyle JJ (eds) Molecular systematic of plants. Chapman and Hall, New York, pp 1-13
2. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11-15
3. Hiratsuka J, Hiroaki S, Whittier R, Ishibashi T, Sakamoto M, Mori M, Kondo Y, Honji Y, Sun C, Meng B, Li Y, Kanno A, Nishizawa Y, Hirai A, Shinozaki K, Sugiura M (1989) The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plasmid DNA inversion during evolution of cereals. Mol Gen Genet 217:185-194
4. Kim KJ, Jansen RK (1995) ndhF sequence evolution and the major clades in the sunflower family. Plant Natl Acad Sci USA 92:10379-10 383
5. Mullis KB, Fallona FA (1987) Specific synthesis of DNA in vitro via a polymerase chain reaction. Methods Enzymol 155:335-350
6. Neyland R, Urbatsch LE (1995) A terrestrial origin for the Orchi-daceae suggested by a phylogeny inferred from ndhF chloroplast gene sequences. Lindleyana 10:244-251
7. Ohyama K, Fukuzawa H, Kohchi T, Sanyo H, Sano T, San S, Umesono K, Shiki Y, Takeuchi M, Chang Z, Aota S, Inokuchi H, Ozeki H (1986) Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322:572-574
8. Olmstead RG, Sweere JA (1994) Combining data in phylogenetic systematics: an empirical approach using three molecular data sets in the Solanaceae. Syst Biol 43:467-481
9. Olmstead RG, Sweere JA, Wolfe KH (1993) Ninety extra nucleotides in ndhF gene of tobacco chloroplast DNA: a summary of revisions to the 1986 genome sequence. Plant Mol Biol 22: 1191-1193
10. Palmer D, Jansen RK, Michaels HJ, Chase MW, Manhart JR (1988) Chloroplast DNA variation and plant phylogeny. Ann Missouri Bot Gard 75: 1180-1206
11. Saiki RK, Gelfand S, Stoffel SJ, Scharf R, Huiguchi GT, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with thermostable DNA polymerase. Science 239:487-491
12. Schluchter WM, Zhao J, Bryant DA (1993) Isolation and characterization of the ndhF gene of Synechococcus sp. strain PCC 7002 and initial characterization of an interposon mutant. J Bacteriol 175:3342-3352
13. Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kalo A, Tohdoh N, Shimada H, Sugiura M (1986) The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression EMBO J 5:2043-2049
14. Sugiura M (1989) The chloroplast genome. The Biochemistry of Plants 15:133-150
15. Swofford DL (1993) Phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey, Champaign Illinois, USA
16. Waksugi T, Tsudzuki J, Ito S, Nakashima K, Tsudzuki T, Sugiura M (1994) Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Plant Natl Acic Sci USA 91:9794-9798
17. Wolfe KH, Sharp PM (1988) Identification of functional open reading frames in chloroplast genomes. Gene 66:215-222
18. Wolfe KH, Li WH, Sharp PM (1987) Rates of nucleotide sibstitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNA's. Plant Natl Acid Sci USA 84:9054-9058