-
1
-
-
0346155809
-
Pseudogenes: are they "junk" or functional DNA?
-
Balakirev E.S., Ayala F.J. Pseudogenes: are they "junk" or functional DNA?. Annu. Rev. Genet. 2003, 37:123-151.
-
(2003)
Annu. Rev. Genet.
, vol.37
, pp. 123-151
-
-
Balakirev, E.S.1
Ayala, F.J.2
-
2
-
-
33745644047
-
Processed pseudogenes, processed genes, and spontaneous mutations in the Arabidopsis genome
-
Benovoy D., Drouin G. Processed pseudogenes, processed genes, and spontaneous mutations in the Arabidopsis genome. J. Mol. Evol. 2006, 62:511-522.
-
(2006)
J. Mol. Evol.
, vol.62
, pp. 511-522
-
-
Benovoy, D.1
Drouin, G.2
-
3
-
-
0036097187
-
Evolution of the phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene
-
Betran E., Wang W., Jin L., Long M. Evolution of the phosphoglycerate mutase processed gene in human and chimpanzee revealing the origin of a new primate gene. Mol. Biol. Evol. 2002, 19:654-663.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 654-663
-
-
Betran, E.1
Wang, W.2
Jin, L.3
Long, M.4
-
4
-
-
0036136814
-
A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents
-
Bustamante C.D., Nielsen R., Hartl D.L. A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents. Mol. Biol. Evol. 2002, 19:110-117.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 110-117
-
-
Bustamante, C.D.1
Nielsen, R.2
Hartl, D.L.3
-
5
-
-
84856793694
-
Pseudogene-mediated posttranscriptional silencing of HMGA1 can result in insulin resistance and type 2 diabetes
-
Chiefari E., Iiritano S., Paonessa F., Le Pera I., Arcidiacono B., Filocamo M., Foti D., Liebhaber S.A., Brunetti A. Pseudogene-mediated posttranscriptional silencing of HMGA1 can result in insulin resistance and type 2 diabetes. Nat. Commun. 2010, 1:40.
-
(2010)
Nat. Commun.
, vol.1
, pp. 40
-
-
Chiefari, E.1
Iiritano, S.2
Paonessa, F.3
Le Pera, I.4
Arcidiacono, B.5
Filocamo, M.6
Foti, D.7
Liebhaber, S.A.8
Brunetti, A.9
-
6
-
-
0019138124
-
Differential hormonal responsiveness of the ovalbumin gene and its pseudogenes in the chick oviduct
-
Colbert D.A., Knoll B.J., Woo S.L., Mace M.L., Tsai M.J., O'Malley B.W. Differential hormonal responsiveness of the ovalbumin gene and its pseudogenes in the chick oviduct. Biochemistry 1980, 19:5586-5592.
-
(1980)
Biochemistry
, vol.19
, pp. 5586-5592
-
-
Colbert, D.A.1
Knoll, B.J.2
Woo, S.L.3
Mace, M.L.4
Tsai, M.J.5
O'Malley, B.W.6
-
8
-
-
0030722234
-
A phosphoglycerate mutase brain isoform (PGAM 1) pseudogene is localized within the human Menkes disease gene (ATP7 A)
-
Dierick H.A., Mercer J.F., Glover T.W. A phosphoglycerate mutase brain isoform (PGAM 1) pseudogene is localized within the human Menkes disease gene (ATP7 A). Gene 1997, 198:37-41.
-
(1997)
Gene
, vol.198
, pp. 37-41
-
-
Dierick, H.A.1
Mercer, J.F.2
Glover, T.W.3
-
9
-
-
51049102332
-
Ripples from neighbouring transcription
-
Ebisuya M., Yamamoto T., Nakajima M., Nishida E. Ripples from neighbouring transcription. Nat. Cell. Biol. 2008, 10:1106-1113.
-
(2008)
Nat. Cell. Biol.
, vol.10
, pp. 1106-1113
-
-
Ebisuya, M.1
Yamamoto, T.2
Nakajima, M.3
Nishida, E.4
-
10
-
-
33644868889
-
Adult tissue-specific expression of a Dppa3-derived retrogene represents a postnatal transcript of pluripotent cell origin
-
Elliman S.J., Wu I., Kemp D.M. Adult tissue-specific expression of a Dppa3-derived retrogene represents a postnatal transcript of pluripotent cell origin. J. Biol. Chem. 2006, 281:16-19.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 16-19
-
-
Elliman, S.J.1
Wu, I.2
Kemp, D.M.3
-
11
-
-
0022423608
-
Structure and transcription of the Drosophila mulleri alcohol dehydrogenase genes
-
Fischer J.A., Maniatis T. Structure and transcription of the Drosophila mulleri alcohol dehydrogenase genes. Nucleic Acids Res. 1985, 13:6899-6917.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 6899-6917
-
-
Fischer, J.A.1
Maniatis, T.2
-
12
-
-
0025796856
-
The human connexin gene family of gap junction proteins: distinct chromosomal locations but similar structures
-
Fishman G.I., Eddy R.L., Shows T.B., Rosenthal L., Leinwand L.A. The human connexin gene family of gap junction proteins: distinct chromosomal locations but similar structures. Genomics 1991, 10:250-256.
-
(1991)
Genomics
, vol.10
, pp. 250-256
-
-
Fishman, G.I.1
Eddy, R.L.2
Shows, T.B.3
Rosenthal, L.4
Leinwand, L.A.5
-
13
-
-
0030971215
-
The rat 5S rRNA bona fide gene repeat maps to chromosome 19q12-->qter and the pseudogene repeat maps to 12q12
-
Frederiksen S., Cao H., Lomholt B., Levan G., Hallenberg C. The rat 5S rRNA bona fide gene repeat maps to chromosome 19q12-->qter and the pseudogene repeat maps to 12q12. Cytogenet. Cell Genet. 1997, 76:101-106.
-
(1997)
Cytogenet. Cell Genet.
, vol.76
, pp. 101-106
-
-
Frederiksen, S.1
Cao, H.2
Lomholt, B.3
Levan, G.4
Hallenberg, C.5
-
14
-
-
0342858851
-
Nature and structure of human genes that generate retropseudogenes
-
Goncalves I., Duret L., Mouchiroud D. Nature and structure of human genes that generate retropseudogenes. Genome Res. 2000, 10:672-678.
-
(2000)
Genome Res.
, vol.10
, pp. 672-678
-
-
Goncalves, I.1
Duret, L.2
Mouchiroud, D.3
-
15
-
-
33747066408
-
The putatively functional Mkrn1-p1 pseudogene is neither expressed nor imprinted, nor does it regulate its source gene in trans
-
Gray T.A., Wilson A., Fortin P.J., Nicholls R.D. The putatively functional Mkrn1-p1 pseudogene is neither expressed nor imprinted, nor does it regulate its source gene in trans. Proc. Natl. Acad. Sci. USA 2006, 103:12039-12044.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 12039-12044
-
-
Gray, T.A.1
Wilson, A.2
Fortin, P.J.3
Nicholls, R.D.4
-
17
-
-
79960191759
-
A transcribed pseudogene of MYLK promotes cell proliferation
-
Han Y.J., Ma S.F., Yourek G., Park Y.D., Garcia J.G. A transcribed pseudogene of MYLK promotes cell proliferation. FASEB J. 2011, 25:2305-2312.
-
(2011)
FASEB J.
, vol.25
, pp. 2305-2312
-
-
Han, Y.J.1
Ma, S.F.2
Yourek, G.3
Park, Y.D.4
Garcia, J.G.5
-
18
-
-
0018596208
-
The structure and transcription of four linked rabbit beta-like globin genes
-
Hardison R.C., Butler E.T., Lacy E., Maniatis T., Rosenthal N., Efstratiadis A. The structure and transcription of four linked rabbit beta-like globin genes. Cell 1979, 18:1285-1297.
-
(1979)
Cell
, vol.18
, pp. 1285-1297
-
-
Hardison, R.C.1
Butler, E.T.2
Lacy, E.3
Maniatis, T.4
Rosenthal, N.5
Efstratiadis, A.6
-
19
-
-
0036300794
-
A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution
-
Harrison P., Kumar A., Lan N., Echols N., Snyder M., Gerstein M. A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution. J. Mol. Biol. 2002, 316:409-419.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 409-419
-
-
Harrison, P.1
Kumar, A.2
Lan, N.3
Echols, N.4
Snyder, M.5
Gerstein, M.6
-
20
-
-
0035253528
-
Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome
-
Harrison P.M., Echols N., Gerstein M.B. Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome. Nucleic Acids Res. 2001, 29:818-830.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 818-830
-
-
Harrison, P.M.1
Echols, N.2
Gerstein, M.B.3
-
21
-
-
0037327334
-
Identification of pseudogenes in the Drosophila melanogaster genome
-
Harrison P.M., Milburn D., Zhang Z., Bertone P., Gerstein M. Identification of pseudogenes in the Drosophila melanogaster genome. Nucleic Acids Res. 2003, 31:1033-1037.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1033-1037
-
-
Harrison, P.M.1
Milburn, D.2
Zhang, Z.3
Bertone, P.4
Gerstein, M.5
-
22
-
-
17844396017
-
Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability
-
Harrison P.M., Zheng D., Zhang Z., Carriero N., Gerstein M. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Res. 2005, 33:2374-2383.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2374-2383
-
-
Harrison, P.M.1
Zheng, D.2
Zhang, Z.3
Carriero, N.4
Gerstein, M.5
-
23
-
-
84865760395
-
GENCODE: the reference human genome annotation for The ENCODE Project
-
Harrow J., Frankish A., Gonzalez J.M., Tapanari E., Diekhans M., Kokocinski F., Aken B.L., Barrell D., Zadissa A., Searle S., Barnes I., Bignell A., Boychenko V., Hunt T., Kay M., Mukherjee G., Rajan J., Despacio-Reyes G., Saunders G., Steward C., Harte R., Lin M., Howald C., Tanzer A., Derrien T., Chrast J., Walters N., Balasubramanian S., Pei B., Tress M., Rodriguez J.M., Ezkurdia I., van Baren J., Brent M., Haussler D., Kellis M., Valencia A., Reymond A., Gerstein M., Guigo R., Hubbard T.J. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res. 2012, 22:1760-1774.
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
Barnes, I.11
Bignell, A.12
Boychenko, V.13
Hunt, T.14
Kay, M.15
Mukherjee, G.16
Rajan, J.17
Despacio-Reyes, G.18
Saunders, G.19
Steward, C.20
Harte, R.21
Lin, M.22
Howald, C.23
Tanzer, A.24
Derrien, T.25
Chrast, J.26
Walters, N.27
Balasubramanian, S.28
Pei, B.29
Tress, M.30
Rodriguez, J.M.31
Ezkurdia, I.32
van Baren, J.33
Brent, M.34
Haussler, D.35
Kellis, M.36
Valencia, A.37
Reymond, A.38
Gerstein, M.39
Guigo, R.40
Hubbard, T.J.41
more..
-
24
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P., Bork P., Burt D.W., Groenen M.A., Delany M.E., Dodgson J.B. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
Hillier, L.W.1
Miller, W.2
Birney, E.3
Warren, W.4
Hardison, R.C.5
Ponting, C.P.6
Bork, P.7
Burt, D.W.8
Groenen, M.A.9
Delany, M.E.10
Dodgson, J.B.11
-
25
-
-
0038414560
-
An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene
-
Hirotsune S., Yoshida N., Chen A., Garrett L., Sugiyama F., Takahashi S., Yagami K., Wynshaw-Boris A., Yoshiki A. An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene. Nature 2003, 423:91-96.
-
(2003)
Nature
, vol.423
, pp. 91-96
-
-
Hirotsune, S.1
Yoshida, N.2
Chen, A.3
Garrett, L.4
Sugiyama, F.5
Takahashi, S.6
Yagami, K.7
Wynshaw-Boris, A.8
Yoshiki, A.9
-
26
-
-
0037055273
-
A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome
-
Homma K., Fukuchi S., Kawabata T., Ota M., Nishikawa K. A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome. Gene 2002, 294:25-33.
-
(2002)
Gene
, vol.294
, pp. 25-33
-
-
Homma, K.1
Fukuchi, S.2
Kawabata, T.3
Ota, M.4
Nishikawa, K.5
-
27
-
-
0017693139
-
A pseudogene structure in 5S DNA of Xenopus laevis
-
Jacq C., Miller J.R., Brownlee G.G. A pseudogene structure in 5S DNA of Xenopus laevis. Cell 1977, 12:109-120.
-
(1977)
Cell
, vol.12
, pp. 109-120
-
-
Jacq, C.1
Miller, J.R.2
Brownlee, G.G.3
-
28
-
-
0025910757
-
Processed pseudogenes in Drosophila
-
Jeffs P., Ashburner M. Processed pseudogenes in Drosophila. Proc. Biol. Sci. 1991, 244:151-159.
-
(1991)
Proc. Biol. Sci.
, vol.244
, pp. 151-159
-
-
Jeffs, P.1
Ashburner, M.2
-
29
-
-
84862695743
-
Expressed pseudogenes in the transcriptional landscape of human cancers
-
Kalyana-Sundaram S., Kumar-Sinha C., Shankar S., Robinson D.R., Wu Y.M., Cao X., Asangani I.A., Kothari V., Prensner J.R., Lonigro R.J., Iyer M.K., Barrette T., Shanmugam A., Dhanasekaran S.M., Palanisamy N., Chinnaiyan A.M. Expressed pseudogenes in the transcriptional landscape of human cancers. Cell 2012, 149:1622-1634.
-
(2012)
Cell
, vol.149
, pp. 1622-1634
-
-
Kalyana-Sundaram, S.1
Kumar-Sinha, C.2
Shankar, S.3
Robinson, D.R.4
Wu, Y.M.5
Cao, X.6
Asangani, I.A.7
Kothari, V.8
Prensner, J.R.9
Lonigro, R.J.10
Iyer, M.K.11
Barrette, T.12
Shanmugam, A.13
Dhanasekaran, S.M.14
Palanisamy, N.15
Chinnaiyan, A.M.16
-
30
-
-
2942702193
-
Connexin43 pseudogene is expressed in tumor cells and inhibits growth
-
Kandouz M., Bier A., Carystinos G.D., Alaoui-Jamali M.A., Batist G. Connexin43 pseudogene is expressed in tumor cells and inhibits growth. Oncogene 2004, 23:4763-4770.
-
(2004)
Oncogene
, vol.23
, pp. 4763-4770
-
-
Kandouz, M.1
Bier, A.2
Carystinos, G.D.3
Alaoui-Jamali, M.A.4
Batist, G.5
-
31
-
-
33646200506
-
Origin and evolution of processed pseudogenes that stabilize functional Makorin1 mRNAs in mice, primates and other mammals
-
Kaneko S., Aki I., Tsuda K., Mekada K., Moriwaki K., Takahata N., Satta Y. Origin and evolution of processed pseudogenes that stabilize functional Makorin1 mRNAs in mice, primates and other mammals. Genetics 2006, 172:2421-2429.
-
(2006)
Genetics
, vol.172
, pp. 2421-2429
-
-
Kaneko, S.1
Aki, I.2
Tsuda, K.3
Mekada, K.4
Moriwaki, K.5
Takahata, N.6
Satta, Y.7
-
32
-
-
33947236065
-
Genome-wide profiling and analysis of Arabidopsis siRNAs
-
Kasschau K.D., Fahlgren N., Chapman E.J., Sullivan C.M., Cumbie J.S., Givan S.A., Carrington J.C. Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol. 2007, 5:e57.
-
(2007)
PLoS Biol.
, vol.5
-
-
Kasschau, K.D.1
Fahlgren, N.2
Chapman, E.J.3
Sullivan, C.M.4
Cumbie, J.S.5
Givan, S.A.6
Carrington, J.C.7
-
33
-
-
70349741137
-
Assessing the genomic evidence for conserved transcribed pseudogenes under selection
-
Khachane A.N., Harrison P.M. Assessing the genomic evidence for conserved transcribed pseudogenes under selection. BMC Genomics 2009, 10:435.
-
(2009)
BMC Genomics
, vol.10
, pp. 435
-
-
Khachane, A.N.1
Harrison, P.M.2
-
34
-
-
70449706134
-
Strong association between pseudogenization mechanisms and gene sequence length
-
Khachane A.N., Harrison P.M. Strong association between pseudogenization mechanisms and gene sequence length. Biology Direct 2009, 4:38.
-
(2009)
Biology Direct
, vol.4
, pp. 38
-
-
Khachane, A.N.1
Harrison, P.M.2
-
35
-
-
84872738323
-
Axonal trafficking of an antisense RNA transcribed from a pseudogene is regulated by classical conditioning
-
Korneev S.A., Kemenes I., Bettini N.L., Kemenes G., Staras K., Benjamin P.R., O'Shea M. Axonal trafficking of an antisense RNA transcribed from a pseudogene is regulated by classical conditioning. Sci. Rep. 2013, 3:1027.
-
(2013)
Sci. Rep.
, vol.3
, pp. 1027
-
-
Korneev, S.A.1
Kemenes, I.2
Bettini, N.L.3
Kemenes, G.4
Staras, K.5
Benjamin, P.R.6
O'Shea, M.7
-
36
-
-
0033568856
-
Neuronal expression of neural nitric oxide synthase (nNOS) protein is suppressed by an antisense RNA transcribed from an NOS pseudogene
-
Korneev S.A., Park J.H., O'Shea M. Neuronal expression of neural nitric oxide synthase (nNOS) protein is suppressed by an antisense RNA transcribed from an NOS pseudogene. J. Neurosci. 1999, 19:7711-7720.
-
(1999)
J. Neurosci.
, vol.19
, pp. 7711-7720
-
-
Korneev, S.A.1
Park, J.H.2
O'Shea, M.3
-
37
-
-
0024821318
-
Localization of the active type I DNA topoisomerase gene on human chromosome 20q11.2-13.1, and two pseudogenes on chromosomes 1q23-24 and 22q11.2-13.1
-
Kunze N., Yang G.C., Jiang Z.Y., Hameister H., Adolph S., Wiedorn K.H., Richter A., Knippers R. Localization of the active type I DNA topoisomerase gene on human chromosome 20q11.2-13.1, and two pseudogenes on chromosomes 1q23-24 and 22q11.2-13.1. Hum. Genet. 1989, 84:6-10.
-
(1989)
Hum. Genet.
, vol.84
, pp. 6-10
-
-
Kunze, N.1
Yang, G.C.2
Jiang, Z.Y.3
Hameister, H.4
Adolph, S.5
Wiedorn, K.H.6
Richter, A.7
Knippers, R.8
-
38
-
-
0018931557
-
The nucleotide sequence of a rabbit beta-globin pseudogene
-
Lacy E., Maniatis T. The nucleotide sequence of a rabbit beta-globin pseudogene. Cell 1980, 21:545-553.
-
(1980)
Cell
, vol.21
, pp. 545-553
-
-
Lacy, E.1
Maniatis, T.2
-
39
-
-
0021112507
-
Chromosomal arrangement of leghemoglobin genes in soybean
-
Lee J.S., Brown G.G., Verma D.P. Chromosomal arrangement of leghemoglobin genes in soybean. Nucleic Acids Res. 1983, 11:5541-5553.
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 5541-5553
-
-
Lee, J.S.1
Brown, G.G.2
Verma, D.P.3
-
40
-
-
0038329286
-
Molecular biology: complicity of gene and pseudogene
-
Lee J.T. Molecular biology: complicity of gene and pseudogene. Nature 2003, 423:26-28.
-
(2003)
Nature
, vol.423
, pp. 26-28
-
-
Lee, J.T.1
-
41
-
-
0019726330
-
Pseudogenes as a paradigm of neutral evolution
-
Li W.H., Gojobori T., Nei M. Pseudogenes as a paradigm of neutral evolution. Nature 1981, 292:237-239.
-
(1981)
Nature
, vol.292
, pp. 237-239
-
-
Li, W.H.1
Gojobori, T.2
Nei, M.3
-
42
-
-
33847076790
-
Stem cell regulatory function mediated by expression of a novel mouse Oct4 pseudogene
-
Lin H., Shabbir A., Molnar M., Lee T. Stem cell regulatory function mediated by expression of a novel mouse Oct4 pseudogene. Biochem. Biophys. Res. Commun. 2007, 355:111-116.
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.355
, pp. 111-116
-
-
Lin, H.1
Shabbir, A.2
Molnar, M.3
Lee, T.4
-
43
-
-
80052536392
-
RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders
-
Lin M., Pedrosa E., Shah A., Hrabovsky A., Maqbool S., Zheng D., Lachman H.M. RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders. PLoS ONE 2011, 6:e23356.
-
(2011)
PLoS ONE
, vol.6
-
-
Lin, M.1
Pedrosa, E.2
Shah, A.3
Hrabovsky, A.4
Maqbool, S.5
Zheng, D.6
Lachman, H.M.7
-
44
-
-
11144239489
-
Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes
-
Liu Y., Harrison P.M., Kunin V., Gerstein M. Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes. Genome Biol. 2004, 5:R64.
-
(2004)
Genome Biol.
, vol.5
-
-
Liu, Y.1
Harrison, P.M.2
Kunin, V.3
Gerstein, M.4
-
45
-
-
84868676906
-
Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs
-
Marques A.C., Tan J., Lee S., Kong L., Heger A., Ponting C.P. Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs. Genome Biol. 2012, 13:R102.
-
(2012)
Genome Biol.
, vol.13
-
-
Marques, A.C.1
Tan, J.2
Lee, S.3
Kong, L.4
Heger, A.5
Ponting, C.P.6
-
46
-
-
0018867386
-
Unusual alpha-globin-like gene that has cleanly lost both globin intervening sequences
-
Nishioka Y., Leder A., Leder P. Unusual alpha-globin-like gene that has cleanly lost both globin intervening sequences. Proc. Natl. Acad. Sci. USA 1980, 77:2806-2809.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 2806-2809
-
-
Nishioka, Y.1
Leder, A.2
Leder, P.3
-
47
-
-
84865726286
-
The GENCODE pseudogene resource
-
Pei B., Sisu C., Frankish A., Howald C., Habegger L., Mu X.J., Harte R., Balasubramanian S., Tanzer A., Diekhans M., Reymond A., Hubbard T.J., Harrow J., Gerstein M.B. The GENCODE pseudogene resource. Genome Biol. 2012, 13:R51.
-
(2012)
Genome Biol.
, vol.13
-
-
Pei, B.1
Sisu, C.2
Frankish, A.3
Howald, C.4
Habegger, L.5
Mu, X.J.6
Harte, R.7
Balasubramanian, S.8
Tanzer, A.9
Diekhans, M.10
Reymond, A.11
Hubbard, T.J.12
Harrow, J.13
Gerstein, M.B.14
-
48
-
-
0029856377
-
High intrinsic rate of DNA loss in Drosophila
-
Petrov D.A., Lozovskaya E.R., Hartl D.L. High intrinsic rate of DNA loss in Drosophila. Nature 1996, 384:346-349.
-
(1996)
Nature
, vol.384
, pp. 346-349
-
-
Petrov, D.A.1
Lozovskaya, E.R.2
Hartl, D.L.3
-
49
-
-
79955035120
-
Pseudogenes: pseudo-functional or key regulators in health and disease?
-
Pink R.C., Wicks K., Caley D.P., Punch E.K., Jacobs L., Carter D.R. Pseudogenes: pseudo-functional or key regulators in health and disease?. RNA 2011, 17:792-798.
-
(2011)
RNA
, vol.17
, pp. 792-798
-
-
Pink, R.C.1
Wicks, K.2
Caley, D.P.3
Punch, E.K.4
Jacobs, L.5
Carter, D.R.6
-
50
-
-
8444232039
-
Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice
-
Podlaha O., Zhang J. Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice. Mol. Biol. Evol. 2004, 21:2202-2209.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 2202-2209
-
-
Podlaha, O.1
Zhang, J.2
-
51
-
-
84876230175
-
Pseudogenes and their evolution
-
John Wiley & Sons, Ltd, Chichester (United Kingdom)
-
Podlaha O., Zhang J. Pseudogenes and their evolution. Encyclopedia of Life Sciences (ELS) 2010, 1-8. John Wiley & Sons, Ltd, Chichester (United Kingdom).
-
(2010)
Encyclopedia of Life Sciences (ELS)
, pp. 1-8
-
-
Podlaha, O.1
Zhang, J.2
-
52
-
-
84866543760
-
Pseudogenes: newly discovered players in human cancer
-
Poliseno L. Pseudogenes: newly discovered players in human cancer. Sci. Signal. 2012, 5:re5.
-
(2012)
Sci. Signal.
, vol.5
-
-
Poliseno, L.1
-
53
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
Poliseno L., Salmena L., Zhang J., Carver B., Haveman W.J., Pandolfi P.P. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature 2010, 465:1033-1038.
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
54
-
-
0019302686
-
Pseudogenes
-
Proudfoot N. Pseudogenes. Nature 1980, 286:840-841.
-
(1980)
Nature
, vol.286
, pp. 840-841
-
-
Proudfoot, N.1
-
55
-
-
0018973444
-
The structure of a human alpha-globin pseudogene and its relationship to alpha-globin gene duplication
-
Proudfoot N.J., Maniatis T. The structure of a human alpha-globin pseudogene and its relationship to alpha-globin gene duplication. Cell 1980, 21:537-544.
-
(1980)
Cell
, vol.21
, pp. 537-544
-
-
Proudfoot, N.J.1
Maniatis, T.2
-
56
-
-
81455158402
-
Characterization of POU5F1 (OCT4) gene and its promoter in buffalo ESC-like cells identifies multiple transcription start sites and expression of four pseudogenes
-
Singh N., George A., Sharma R., Singla S.K., Palta P., Manik R., Chauhan M.S., Singh D. Characterization of POU5F1 (OCT4) gene and its promoter in buffalo ESC-like cells identifies multiple transcription start sites and expression of four pseudogenes. Gene 2012, 491:165-172.
-
(2012)
Gene
, vol.491
, pp. 165-172
-
-
Singh, N.1
George, A.2
Sharma, R.3
Singla, S.K.4
Palta, P.5
Manik, R.6
Chauhan, M.S.7
Singh, D.8
-
57
-
-
0037275841
-
Comparative and evolutionary analysis of the rhesus macaque extended MHC class II region
-
Sudbrak R., Reinhardt R., Hennig S., Lehrach H., Gunther E., Walter L. Comparative and evolutionary analysis of the rhesus macaque extended MHC class II region. Immunogenetics 2003, 54:699-704.
-
(2003)
Immunogenetics
, vol.54
, pp. 699-704
-
-
Sudbrak, R.1
Reinhardt, R.2
Hennig, S.3
Lehrach, H.4
Gunther, E.5
Walter, L.6
-
59
-
-
44349159416
-
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
-
Tam O.H., Aravin A.A., Stein P., Girard A., Murchison E.P., Cheloufi S., Hodges E., Anger M., Sachidanandam R., Schultz R.M., Hannon G.J. Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature 2008, 453:534-538.
-
(2008)
Nature
, vol.453
, pp. 534-538
-
-
Tam, O.H.1
Aravin, A.A.2
Stein, P.3
Girard, A.4
Murchison, E.P.5
Cheloufi, S.6
Hodges, E.7
Anger, M.8
Sachidanandam, R.9
Schultz, R.M.10
Hannon, G.J.11
-
60
-
-
0030330361
-
Cloning, sequencing, and chromosomal localization of two tandemly arranged human pseudogenes for the proliferating cell nuclear antigen (PCNA)
-
Taniguchi Y., Katsumata Y., Koido S., Suemizu H., Yoshimura S., Moriuchi T., Okumura K., Kagotani K., Taguchi H., Imanishi T., Gojobori T., Inoko H. Cloning, sequencing, and chromosomal localization of two tandemly arranged human pseudogenes for the proliferating cell nuclear antigen (PCNA). Mamm. Genome 1996, 7:906-908.
-
(1996)
Mamm. Genome
, vol.7
, pp. 906-908
-
-
Taniguchi, Y.1
Katsumata, Y.2
Koido, S.3
Suemizu, H.4
Yoshimura, S.5
Moriuchi, T.6
Okumura, K.7
Kagotani, K.8
Taguchi, H.9
Imanishi, T.10
Gojobori, T.11
Inoko, H.12
-
61
-
-
84865087597
-
Detecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq data
-
Tonner P., Srinivasasainagendra V., Zhang S., Zhi D. Detecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq data. BMC Genomics 2012, 13:412.
-
(2012)
BMC Genomics
, vol.13
, pp. 412
-
-
Tonner, P.1
Srinivasasainagendra, V.2
Zhang, S.3
Zhi, D.4
-
62
-
-
0348013073
-
A genome-wide survey of human pseudogenes
-
Torrents D., Suyama M., Zdobnov E., Bork P. A genome-wide survey of human pseudogenes. Genome Res. 2003, 13:2559-2567.
-
(2003)
Genome Res.
, vol.13
, pp. 2559-2567
-
-
Torrents, D.1
Suyama, M.2
Zdobnov, E.3
Bork, P.4
-
63
-
-
0022293979
-
Processed pseudogenes: characteristics and evolution
-
Vanin E.F. Processed pseudogenes: characteristics and evolution. Annu. Rev. Genet. 1985, 19:253-272.
-
(1985)
Annu. Rev. Genet.
, vol.19
, pp. 253-272
-
-
Vanin, E.F.1
-
64
-
-
0033850591
-
The origin of the Jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster
-
Wang W., Zhang J., Alvarez C., Llopart A., Long M. The origin of the Jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Mol. Biol. Evol. 2000, 17:1294-1301.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1294-1301
-
-
Wang, W.1
Zhang, J.2
Alvarez, C.3
Llopart, A.4
Long, M.5
-
65
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
Watanabe T., Totoki Y., Toyoda A., Kaneda M., Kuramochi-Miyagawa S., Obata Y., Chiba H., Kohara Y., Kono T., Nakano T., Surani M.A., Sakaki Y., Sasaki H. Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 2008, 453:539-543.
-
(2008)
Nature
, vol.453
, pp. 539-543
-
-
Watanabe, T.1
Totoki, Y.2
Toyoda, A.3
Kaneda, M.4
Kuramochi-Miyagawa, S.5
Obata, Y.6
Chiba, H.7
Kohara, Y.8
Kono, T.9
Nakano, T.10
Surani, M.A.11
Sakaki, Y.12
Sasaki, H.13
-
66
-
-
0025668864
-
Six genes of the human connexin gene family coding for gap junctional proteins are assigned to four different human chromosomes
-
Willecke K., Jungbluth S., Dahl E., Hennemann H., Heynkes R., Grzeschik K.H. Six genes of the human connexin gene family coding for gap junctional proteins are assigned to four different human chromosomes. Eur. J. Cell Biol. 1990, 53:275-280.
-
(1990)
Eur. J. Cell Biol.
, vol.53
, pp. 275-280
-
-
Willecke, K.1
Jungbluth, S.2
Dahl, E.3
Hennemann, H.4
Heynkes, R.5
Grzeschik, K.H.6
-
67
-
-
1642473033
-
Comparative analysis of processed pseudogenes in the mouse and human genomes
-
Zhang Z., Carriero N., Gerstein M. Comparative analysis of processed pseudogenes in the mouse and human genomes. Trends Genet. 2004, 20:62-67.
-
(2004)
Trends Genet.
, vol.20
, pp. 62-67
-
-
Zhang, Z.1
Carriero, N.2
Gerstein, M.3
-
68
-
-
77952694676
-
Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates
-
Zhang Z.D., Frankish A., Hunt T., Harrow J., Gerstein M. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. Genome Biol. 2010, 11:R26.
-
(2010)
Genome Biol.
, vol.11
-
-
Zhang, Z.D.1
Frankish, A.2
Hunt, T.3
Harrow, J.4
Gerstein, M.5
-
69
-
-
3142594265
-
Large-scale analysis of pseudogenes in the human genome
-
Zhang Z., Gerstein M. Large-scale analysis of pseudogenes in the human genome. Curr. Opin. Genet. Dev. 2004, 14:328-335.
-
(2004)
Curr. Opin. Genet. Dev.
, vol.14
, pp. 328-335
-
-
Zhang, Z.1
Gerstein, M.2
-
70
-
-
0036796620
-
Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome
-
Zhang Z., Harrison P., Gerstein M. Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome. Genome Res. 2002, 12:1466-1482.
-
(2002)
Genome Res.
, vol.12
, pp. 1466-1482
-
-
Zhang, Z.1
Harrison, P.2
Gerstein, M.3
-
71
-
-
0346752110
-
Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome
-
Zhang Z., Harrison P.M., Liu Y., Gerstein M. Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome. Genome Res. 2003, 13:2541-2558.
-
(2003)
Genome Res.
, vol.13
, pp. 2541-2558
-
-
Zhang, Z.1
Harrison, P.M.2
Liu, Y.3
Gerstein, M.4
-
72
-
-
34247224735
-
The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?
-
Zheng D., Gerstein M.B. The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they?. Trends Genet. 2007, 23:219-224.
-
(2007)
Trends Genet.
, vol.23
, pp. 219-224
-
-
Zheng, D.1
Gerstein, M.B.2
-
73
-
-
0026660296
-
Identification of antisense RNA transcripts from a human DNA topoisomerase I pseudogene
-
Zhou B.S., Beidler D.R., Cheng Y.C. Identification of antisense RNA transcripts from a human DNA topoisomerase I pseudogene. Cancer Res. 1992, 52:4280-4285.
-
(1992)
Cancer Res.
, vol.52
, pp. 4280-4285
-
-
Zhou, B.S.1
Beidler, D.R.2
Cheng, Y.C.3
|