Thalassiella azotovora gen. nov., sp. nov., a New Member of the Family Kineosporiaceae Isolated from Sea Water in South Korea

Current Microbiology

Volumn 73, Issue 5, 2016, Pages 676-683

  Lee, Dongwook ^a   Jang, Jun Hyeong ^a   Cha, Seho ^a   Seo, Taegun ^a  

^a Dongguk University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; DIAMINOPIMELIC ACID; GLUTAMIC ACID; GLYCINE; GLYCOLIPID; MENAQUINONE; PHOSPHOGLYCOLIPID; PHOSPHOLIPID; RNA 16S; SEA WATER; UNCLASSIFIED DRUG; BACTERIAL DNA; FATTY ACID; RIBOSOME DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIOCHEMICAL ANALYSIS; CHEMOTAXONOMY; CLADISTICS; CONTROLLED STUDY; DNA BASE COMPOSITION; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; KINEOSPORIINEAE; MICROCOCCINEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOUTH KOREA; THALASSIELLA AZOTOVORA; TYPE STRAIN; ACTINOMYCETALES; CHEMISTRY; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; PHYLOGENY;

ACTINOMYCETALES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; PHYLOGENY; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEAWATER;

EID: 84981229313     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-016-1112-y     Document Type: Article

References (45)

1. Akira Y, Tomohiko T, Tadashi N, Toru H (1993) Kineococcus aurantiacus gen. nov., sp. nov., a new aerobic, gram-positive, motile coccus with meso-diaminopimelic acid and arabinogalactan in the cell wall. Int J Syst Evol Microbiol 43:52–57
2. Buck JD (1982) Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 44:992–993
3. Collins MD, Jones D (1981) Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. Microbiol Rev 45:316–354
4. Duangmal K, Thamchaipenet A, Ara I, Matsumoto A, Takahashi Y (2008) Kineococcus gynurae sp. nov., isolated from a Thai medicinal plant. Int J Syst Evol Microbiol 58:2439–2442
5. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
6. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specified tree topology. Syst Zool 20:406–416
7. Gonzalez JM, Saiz-Jimenez C (2002) A fluorimetric method for the estimation of G + C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4:770–773
8. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp 41:95–98
9. Hamada M, Otoguro M, Yamamura H, Tamura T, Suzuki K, Hayakawa M (2010) Luteimicrobium subarcticum gen. nov., sp. nov., a new member of the suborder Micrococcineae. Int J Syst Evol Microbiol 60:796–800
10. Hamada M, Tamura T, Shibata C, Yamamura H, Hayakawa M, Suzuki K (2012) Sediminihabitans luteus gen. nov., sp. nov., a new member of the family Cellulomonadaceae isolated from sea sediment. Antonie Van Leeuwenhoek 102:325–333
11. Hamada M, Yamamura H, Komukai C, Tamura T, Suzuki K, Hayakawa M (2012) Luteimicrobium album sp. nov., a novel actinobacterium isolated from a lichen collected in Japan, and emended description of the genus Luteimicrobium. J Antibiot (Tokyo) 65:427–431
12. Busse HJ, Denner EBM, Lubitz W (1996) Classification and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics. J Biotechnol 47:3–38
13. Hiraishi A, Ueda Y, Ishihara J, Mori T (1996) Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42:457–469
14. Itoh T, Kudo T, Parenti F, Seino A (1989) Amended description of the genus Kineosporia, based on chemotaxonomic and morphological studies. Int J Syst Evol Microbiol 39:168–173
15. Jones BE, Grant WD, Duckworth AW, Schumann P, Weiss N, Stackebrandt E (2005) Cellulomonas bogoriensis sp. nov., an alkaliphilic cellulomonad. Int J Syst Evol Microbiol 55:1711–1714
16. Kim H, Oh HW, Kim JA, Park DS, Park HM, Bae KS (2014) Luteimicrobium xylanilyticum sp. nov., isolated from the gut of a long-horned beetle, Massicus raddei. Int J Syst Evol Microbiol 64:1401–1405
17. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
18. Kim SJ, Jang YH, Hamada M, Tamura T, Ahn JH, Weon HY, Suzuki K, Kwon SW (2013) Angustibacter aerolatus sp. nov., isolated from air. Int J Syst Evol Microbiol 63:610–615
19. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120
20. Komagata K, Suzuki KI (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–205
21. Kudo T, Matsushima K, Itoh T, Sasaki J, Suzuki K (1978) Kineosporia, a new genus of the order Actinomycetales. Int J Syst Bacteriol 28:401–406
22. Kudo T, Matsushima K, Itoh T, Sasaki J, Suzuki K (1998) Description of four new species of the genus Kineosporia: kineosporia succinea sp. nov., Kineosporia rhizophila sp. nov., Kineosporia mikuniensis sp. nov. and Kineosporia rhamnosa sp. nov., isolated from plant samples, and amended description of the genus Kineosporia. Int J Syst Evol Microbiol 48:1245–1255
23. Kuykendall LD, Roy MA, O’Neill JJ, Devine TE (1988) Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Evol Microbiol 38:358–361
24. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948
25. Lee CM, Weon HY, Hong SB, Jeon YA, Schumann P, Kroppenstedt RM, Kwon SW, Stackebrandt E (2008) Cellulomonas aerilata sp. nov., isolated from an air sample. Int J Syst Evol Microbiol 58:2925–2929
26. Lee SD (2006) Kineococcus marinus sp. nov., isolated from marine sediment of the coast of Jeju. Korea. Int J Syst Evol Microbiol 56:1279–1283
27. Lee SD (2013) Angustibacter peucedani sp. nov., isolated from rhizosphere soil. Int J Syst Evol Microbiol 63:744–750
28. Li J, Zhao GZ, Huang HY, Qin S, Zhu WY, Xu LH, Li WJ (2009) Kineosporia mesophila sp. nov., isolated from surface-sterilized stems of Tripterygium wilfordii. Int J Syst Evol Microbiol 59:3150–3154
29. Liu M, Peng F, Wang Y, Zhang K, Chen G, Fang C (2009) Kineococcus xinjiangensis sp. nov., isolated from desert sand. Int J Syst Evol Microbiol 59:1090–1093
30. Li Y, Chen F, Dong K, Wang G (2013) Actinotalea ferrariae sp. nov., isolated from an iron mine, and emended description of the genus Actinotalea. Int J Syst Evol Microbiol 63:3398–3403
31. Maszenan AM, Tay JH, Schumann P, Jiang HL, Tay ST (2005) Quadrisphaera granulorum gen. nov., sp. nov., a gram positive polyphosphate-accumulating coccus in tetrads or aggregates isolated from aerobic granules. Int J Syst Evol Microbiol 55:1771–1777
32. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241
33. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
34. Sakiyama Y, Thao NK, Giang NM, Miyadoh S, Hop DV, Ando K (2009) Kineosporia babensis sp. nov., isolated from plant litter in Vietnam. Int J Syst Evol Microbiol 59:550–554
35. Schumann P, Weiss N, Stackebrandt E (2001) Reclassification of Cellulomonas cellulans (Stackebrandt and Keddie 1986) as Cellulosimicrobium cellulans gen. nov., comb. nov. Int J Syst Evol Microbiol 51:1007–1010
36. Shi Z, Luo G, Wang G (2012) Cellulomonas carbonis sp. nov., isolated from coal mine soil. Int J Syst Evol Microbiol 62:2004–2010
37. Sonesson A, Larsson L, Fox A, Westerdahl G, Odarm G (1988) Determination of enviromental levels of peptidoglycan and lipopolysaccharide using gas chromatography with negative-ion chemical-ionization mass spectrometry utilizing bacteria amino acids and hydroxy fatty acids as biomarkers. J Chromatogr 431:1–15
38. Stackebrandt E, Rainey FA, Ward-Rainey NL (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479–491
39. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
40. Tamura T, Ishida Y, Otoguro M, Yamamura H, Hayakawa M, Suzuki K (2010) Angustibacter luteus gen. nov., sp. nov., isolated from subarctic forest soil. Int J Syst Bacteriol 60:2441–2445
41. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
42. Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703
43. Yi H, Schumann P, Chun J et al (2007) Demequina aestuarii gen. nov., sp. nov., a novel actinomycete of the suborder Micrococcineae, and reclassification of Cellulomonas fermentans Bagnara,1985 as Actinotalea fermentans gen. nov., comb. nov. Int J Syst Evol Microbiol 57:151–156
44. Zhao S, Li L, Li SH, Wang HF, Hozzein WN, Zhang YG, Wadaan MA, Li WJ, Tian CY (2015) Actinotalea suaedae sp. nov., isolated from the halophyte Suaeda physophora in Xinjiang N.W. China. Antonie Van Leeuwenhoek 107:1–7
45. Zhi XY, Li WJ, Stackebrandt E (2009) An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59:589–608