Kineococcus gynurae sp. nov., isolated from a Thai medicinal plant

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 10, 2008, Pages 2439-2442

  Duangmal, Kannika ^a   Thamchaipenet, Arinthip ^a   Ara, Ismet ^b   Matsumoto, Atsuko ^b   Takahashi, Yoko ^b  

^a KASETSART UNIVERSITY   (Thailand)

^b KITASATO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARABINOSE; DIAMINO ACID; DIAMINOPIMELIC ACID; GALACTOSE; GENOMIC DNA; MENAQUINONE; MYCOLIC ACID; PEPTIDOGLYCAN; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA CONTENT; DNA DNA HYBRIDIZATION; GENOTYPE; GRAM POSITIVE COCCI; HYDROLYSIS; INCUBATION TEMPERATURE; KINEOCOCCUS GYNURAE; MEDICINAL PLANT; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PLANT ROOT; PRIORITY JOURNAL; RNA SEQUENCE; SALINITY; SEQUENCE ANALYSIS; TAXONOMIC RANK;

ACTINOMYCETALES; ASTERACEAE; BASE COMPOSITION; DIAMINOPIMELIC ACID; DNA, BACTERIAL; FATTY ACIDS; GENES, BACTERIAL; GENES, RRNA; GENOTYPE; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHENOTYPE; PHYLOGENY; PLANT ROOTS; PLANTS, MEDICINAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; THAILAND; VITAMIN K 2;

GYNURA; KINEOCOCCUS; KINEOCOCCUS RADIOTOLERANS; POSIBACTERIA;

EID: 55849138362     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65671-0     Document Type: Article

References (22)

1. Becker, B., Lechevalier, M. P. & Lechevalier, H. A. (1965). Chemical composition of cell-wall preparations from strains of various form-genera of aerobic actinomycetes. Appl Microbiol 13, 236-243.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. Duangmal, K., Ward, A. C. & Goodfellow, M. (2005). Selective isolation of members of the Streptomyces violaceoruber clade from soil. FEMS Microbiol Lett 245, 321-327.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
7. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
8. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
9. Küster, E. & Williams, S. T. (1964). Media for the isolation of streptomycetes: starch casein medium. Nature 202, 928-929.
10. Lee, S. D. (2006). Kineococcus marinus sp. nov., isolated from marine sediment of the coast of Jeju, Korea. Int J Syst Evol Microbiol 56, 1279-1283.
11. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
12. Phillips, R. W., Wiegel, J., Berry, C. J., Filermans, C., Peacock, A. D., White, D. C. & Shimkets, L. J. (2002). Kineococcus radiotolerans sp. nov., a radiation-resistant, Gram-positive bacterium. Int J Syst Evol Microbiol 52, 933-938.
13. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
14. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
15. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
16. Tamaoka, J., Katayara-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
17. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
18. Tomiyasu, I. (1982). Mycolic acid composition and thermally adaptative changes in Nocardia asteroides. J Bacteriol 151, 828-837.
19. Uchida, K. & Aida, K. (1984). An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 30, 131-134.
20. Van de Peer, Y. & De Wachter, R. (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10, 569-570.
21. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
22. Yokota, A., Tamura, T., Nishii, T. & Hasegawa, T. (1993). Kineococcus aurantiacus gen. nov., sp. nov., a new aerobic, gram-positive, motile coccus with meso-diaminopimelic acid and arabinogalactan in the cell wall. Int J Syst Bacteriol 43, 52-57.