Description of four new species of the genus kineosporia: Kineosporia succinea sp. nov., Kineosporia rhizophila sp. nov., Kineosporia mikuniensis sp. nov. and Kineosporia rhamnosa sp. nov., isolated from plant samples, and amended description of the genus Kineosporia

International Journal of Systematic Bacteriology

Volumn 48, Issue 4, 1998, Pages 1245-1255

  Kudo, Takuji ^b   Matsushima, Keisuke ^a,b   Itoh, Takashi ^b   Sasaki, Junko ^b   Suzuki, Ken Ichiro ^b  

^a SHIONOGI AND CO LTD   (Japan)

^b RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

Actinomycetes; Kineosiporia rhizophila; Kineosporia mikuniensis; Kineosporia rhamnosa; Kineosporia succinea

Indexed keywords

RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; KINEOSPORIA MIKUNIENSIS; KINEOSPORIA RHAMNOSA; KINEOSPORIA RHIZOPHILA; KINEOSPORIA SUCCINEA; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SPECIES DIFFERENTIATION; TAXONOMY;

KINEOSPORIA AURANTIACA; KINEOSPORIA MIKUNIENSIS; KINEOSPORIA RHAMNOSA; KINEOSPORIA RHIZOPHILA; KINEOSPORIA SUCCINEA;

EID: 0031756408     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-48-4-1245     Document Type: Article

References (44)

1. Asano, K. & Kawamoto, I. (1986). Catellatospora, a new genus of the Actinomycetales. Int J Syst Bacteriol 36, 512-517.
2. Asano, K., Masunaga, I. & Kawamoto, I. (1989a). Catellatospora matsumotoense sp. nov. and C. tsunoense sp. nov., actinomycetes found in woodland soils. Int J Syst Bacteriol 39, 309-313.
3. Asano, K., Sano, H., Masunaga, I. & Kawamoto, I. (1989b). 3-O-Methylrhamnose: identification and distribution in Catellatospora species and related actinomycetes. Int J Syst Bacteriol 39, 56-60.
4. Asano, K., Masunaga, I., Kawamoto, I. & Ohta, S. (1990). Cell-wall teichuronic acid containing 3-O-methylrhamnose and glucuronic acid in Catellatospora ferruginea, a soil actinomycete. Agric Biol Chem 54, 1235-1240.
5. Barnard, S. D. & Parenti, F. (1983). Ultrastructural morphology of the genus Kineosporia. Curr Microbiol 8, 173-176.
6. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 75, 4801-4805.
7. Collins, M. D., Faulkner, M. & Keddie, M. (1984). Menaquinone composition of some sporeforming actinomycetes. Syst Appl Microbiol 5, 20-29.
8. Cross, T. & Makkar, N. S. (1986). Spore dome actinomycetes. In Biological, Biochemical and Biomedical Aspects of Actinomycetes, pp. 579-581. Edited by G. Szabó, S. Biró & M. Goodfellow. Budapest: Akadémiai Kiadó.
9. Einarsson, S. & Josefsson, B. (1987). Separation of amino acid enantiomers and chiral amines using precolumn derivatization with (+)-1-(9-fluorenyl)ethyl chloroformate and reversed-phase liquid chromatography. Anal Chem 59, 1191-1195.
10. Eke, M. A., Alderson, G. & Cross, T. (1989). An actinomycete that changes wall composition during sporulation. Lett Appl Microbiol 9, 1-4.
11. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
12. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
13. Felsenstein, J. (1995). PHYLIP (phylogeny inference package), version 3.57c. Seattle: Department of Genetics, University of Washington.
14. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
15. Grund, E. & Kroppenstedt, R. M. (1989). Transfer of five Nocardiopsis species to the genus Saccharothrix Labeda et al. 1984. Syst Appl Microbiol 12, 267-274.
16. Itoh, T., Kudo, T., Parenti, F. & Seino, A. (1989). Amended description of the genus Kineosporia, based on chemotaxonomic and morphological studies. Int J Syst Bacteriol 39, 168-173.
17. Jacobson, E., Grauville, W. C. & Fogs, C. E. (1958). Color Harmony Manual, 4th edn. Chicago: Container Corporation of America.
18. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
19. Koch, C., Kroppenstedt, R. M., Rainey, F. A. & Stackebrandt, E. (1996). 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae. Int J Syst Bacteriol 46, 765-768.
20. Kroppenstedt, R. M. (1992). The genus Nocardiopsis. In The Prokaryotes, vol. II, pp. 1139-1156. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
21. Kudo, T., Itoh, T., Miyadoh, S., Shomura, T. & Seino, A. (1993). Herbidospora gen. nov., a new genus of the family Streptosporangiaceae Goodfellow et al. 1990. Int J Syst Bacteriol 43, 319-328.
22. Labeda, D. P., Testa, R. T., Lechevalier, M. P. & Lechevalier, H. A. (1984). Saccharothrix: a new genus of the Actinomycetales related to Nocardiopsis. Int J Syst Bacteriol 34, 426-431.
23. Lechevalier, M. P. & Lechevalier, H. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
24. Lechevalier, M. P., De Bievre, C. & Lechevalier, H. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
25. Maidak, B. L., Larsen, N., McCaughey, M. J., Overbeek, R., Olsen, G. J., Fogel, K., Blandy, J. & Woese, C. R. (1994). The Ribosomal Database Project. Nucleic Acids Res 22, 3485-3487.
26. Makkar, N. S. & Cross, T. (1982). Actinoplanetes in soil and on plant litter from freshwater habitats. J Appl Bacteriol 52, 209-218.
27. Mikami, H. & Ishida, Y. (1983). Post-column fluorometric detection of reducing sugars in high-performance liquid chromatography using arginine. Bunseki Kagaku 32, E207-E210.
28. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
29. Pagani, H. & Parenti, F. (1978). Kineosporia, a new genus of the order Actinomycetales. Int J Syst Bacteriol 28, 401-406.
30. Raeder, U. & Broda, P. (1985). Rapid preparation of DNA from filamentous fungi. Lett Appl Microbiol 1, 17-20.
31. Saito, H. & Miura, K. (1963). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619-629.
32. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
33. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
34. Stackebrandt, E., Kroppenstedt, R. M., Jahnke, K.-D., Kemmerling, C. & Gürtler, H. (1994). Transfer of Streptosporangium viridogriseum (Okuda et al. 1966), Streptosporangium viridogriseum subsp. kofuense (Nonomura and Ohara 1969), and Streptosporangium albidum (Furumai et al. 1968) to Kutzneria gen. nov. as Kutzneria viridogrisea comb. nov., Kutzneria kofuensis comb. nov., and Kutzneria albida comb. nov., respectively, and emendation of the genus Streptosporangium. Int J Syst Bacteriol 44, 265-269.
35. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
36. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
37. Stevenson, I. L. (1967). Utilization of aromatic hydrocarbons by Arthrobacter spp. Can J Microbiol 13, 205-211.
38. Suzuki, K. & Komagata, K. (1983). Taxonomic significance of cellular fatty acid composition in some coryneform bacteria. Int J Syst Bacteriol 33, 188-200.
39. Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T. & Komagata, K. (1996). Agromyces mediolanus sp. nov., nom. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4-diaminobutyric acid in the cell wall peptidoglycan. Int J Syst Bacteriol 46, 88-93.
40. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
41. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
42. Tomiyasu, I. (1982). Mycolic acid composition and thermally adaptative changes in Nocardia asteroides. J Bacteriol 151, 828-837.
43. Uchida, K. & Aida, K. (1984). An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 30, 131-134.
44. Willoughby, L. G. (1969). A study on aquatic actinomycetes, the allochthonous leaf component. Nova Hedwigia 18, 45-113.