-
3
-
-
79953034289
-
Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-seq and Microarrays
-
Bottomly D, Walter NAR, Hunter JE, Darakjian P, Kawane S, Buck KJ, Searles RP, Mooney M, McWeeney SK, Hitzemann R (2011). “Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-seq and Microarrays.” PLoS One, 6(3), 17820. doi: 10.1371/journal.pone.0017820.
-
(2011)
Plos One
, vol.6
, Issue.3
-
-
Bottomly, D.1
Walter, N.2
Hunter, J.E.3
Darakjian, P.4
Kawane, S.5
Buck, K.J.6
Searles, R.P.7
Mooney, M.8
McWeeney, S.K.9
Hitzemann, R.10
-
4
-
-
84888884169
-
High Throughput Sequencing Methods and Analysis for Microbiome Research
-
Di Bella JM, Bao Y, Gloor GB, Burton JP, Reid G (2013). “High Throughput Sequencing Methods and Analysis for Microbiome Research.” J Microbiol Methods, 95(3), 401-14. doi:10.1016/j.mimet.2013.08.011.
-
(2013)
J Microbiol Methods
, vol.95
, Issue.3
, pp. 401-414
-
-
Di Bella, J.M.1
Bao, Y.2
Gloor, G.B.3
Burton, J.P.4
Reid, G.5
-
5
-
-
84900535804
-
Dynamics and Associations of Microbial Community Types Across the Human Body
-
Ding T, Schloss PD (2014). “Dynamics and Associations of Microbial Community Types Across the Human Body.” Nature, 509(7500), 357-60. doi:10.1038/nature13178.
-
(2014)
Nature
, vol.509
, Issue.7500
, pp. 357-360
-
-
Ding, T.1
Schloss, P.D.2
-
6
-
-
84879750908
-
ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq
-
Fernandes AD, Macklaim JM, Linn T, Reid G, Gloor GB (2013). “ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq.” PLoS ONE, 8(7), 67019.
-
(2013)
Plos ONE
, vol.8
, Issue.7
-
-
Fernandes, A.D.1
Macklaim, J.M.2
Linn, T.3
Reid, G.4
Gloor, G.B.5
-
7
-
-
84902140982
-
Unifying the analysis of High-throughput Sequencing Datasets: Characterizing RNA-seq, 16S rRNA Gene Sequencing and Selective Growth Experiments by Compositional Data Analysis
-
Fernandes AD, Reid JN, Macklaim JM, McMurrough TA, Edgell DR, Gloor GB (2014). “Unifying the analysis of High-throughput Sequencing Datasets: Characterizing RNA-seq, 16S rRNA Gene Sequencing and Selective Growth Experiments by Compositional Data Analysis.” Microbiome, 2, 15. doi:10.1186/2049-2618-2-15.
-
(2014)
Microbiome
, vol.2
, pp. 15
-
-
Fernandes, A.D.1
Reid, J.N.2
Macklaim, J.M.3
McMurrough, T.A.4
Edgell, D.R.5
Gloor, G.B.6
-
8
-
-
84947809158
-
Statistical Models for RNA-seq Data Derived from a Two-condition 48-replicate Experiment
-
Gierlinski M, Cole C, Schofield P, Schurch NJ, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson G, Owen-Hughes T, Blaxter M, Barton GJ (2015). “Statistical Models for RNA-seq Data Derived from a Two-condition 48-replicate Experiment.” Bioinformatics. doi:10.1093/bioinformatics/btv425.
-
(2015)
Bioinformatics
-
-
Gierlinski, M.1
Cole, C.2
Schofield, P.3
Schurch, N.J.4
Sherstnev, A.5
Singh, V.6
Wrobel, N.7
Gharbi, K.8
Simpson, G.9
Owen-Hughes, T.10
Blaxter, M.11
Barton, G.J.12
-
9
-
-
84856521514
-
Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics
-
Holmes I, Harris K, Quince C (2012). “Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics.” PLoS One, 7(2), 30126. doi:10.1371/journal.pone.0030126.
-
(2012)
Plos One
, vol.7
, Issue.2
-
-
Holmes, I.1
Harris, K.2
Quince, C.3
-
10
-
-
84894118144
-
Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders
-
Hsiao EY, McBride SW, Hsien S, Sharon G, Hyde ER, McCue T, Codelli JA, Chow J, Reisman SE, Petrosino JF, Patterson PH, Mazmanian SK (2013). “Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders.” Cell, 155(7), 1451-63. doi:10.1016/j.cell.2013.11.024.
-
(2013)
Cell
, vol.155
, Issue.7
, pp. 1451-1463
-
-
Hsiao, E.Y.1
McBride, S.W.2
Hsien, S.3
Sharon, G.4
Hyde, E.R.5
McCue, T.6
Codelli, J.A.7
Chow, J.8
Reisman, S.E.9
Petrosino, J.F.10
Patterson, P.H.11
Mazmanian, S.K.12
-
11
-
-
84871441270
-
Hypothesis Testing and Power Calculations for Taxonomic- based Human Microbiome Data
-
La Rosa PS, Brooks JP, Deych E, Boone EL, Edwards DJ, Wang Q, Sodergren E, Weinstock G, Shannon WD (2012). “Hypothesis Testing and Power Calculations for Taxonomic- based Human Microbiome Data.” PLoS One, 7(12), 52078. doi:10.1371/journal.pone.0052078.
-
(2012)
Plos One
, vol.7
, Issue.12
-
-
La Rosa, P.S.1
Brooks, J.P.2
Deych, E.3
Boone, E.L.4
Edwards, D.J.5
Wang, Q.6
Sodergren, E.7
Weinstock, G.8
Shannon, W.D.9
-
12
-
-
84885502854
-
Proportions, Percentages, ppm: Do the Molecular Biosciences Treat Compositional Data Right?
-
Lovell D, Müller W, Taylor J, Zwart A, Helliwell C, Pawlowsky-Glahn V, Buccianti A (2011). “Proportions, Percentages, ppm: Do the Molecular Biosciences Treat Compositional Data Right?” Compositional Data Analysis: Theory and Applications, pp. 193-207.
-
(2011)
Compositional Data Analysis: Theory and Applications
, pp. 193-207
-
-
Lovell, D.1
Müller, W.2
Taylor, J.3
Zwart, A.4
Helliwell, C.5
Pawlowsky-Glahn, V.6
Buccianti, A.7
-
13
-
-
84926322943
-
Proportionality: A Valid Alternative to Correlation for Relative Data
-
Lovell D, Pawlowsky-Glahn V, Egozcue JJ, Marguerat S, Bähler J (2015). “Proportionality: a Valid Alternative to Correlation for Relative Data.” PLoS Comput Biol, 11(3), 1004075. doi:10.1371/journal.pcbi.1004075.
-
(2015)
Plos Comput Biol
, vol.11
, Issue.3
-
-
Lovell, D.1
Pawlowsky-Glahn, V.2
Egozcue, J.J.3
Marguerat, S.4
Bähler, J.5
-
14
-
-
84879769779
-
Comparative Meta-RNA-seq of the Vaginal Microbiota and Differential Expression by Lactobacillus iners in Health and Dysbiosis
-
Macklaim MJ, Fernandes DA, Di Bella MJ, Hammond JA, Reid G, Gloor GB (2013). “Comparative Meta-RNA-seq of the Vaginal Microbiota and Differential Expression by Lactobacillus iners in Health and Dysbiosis.” Microbiome, 1, 15. doi:10.1186/2049-2618-1-12.
-
(2013)
Microbiome
, vol.1
, Issue.15
-
-
Macklaim, M.J.1
Fernandes, D.A.2
Di Bella, M.J.3
Hammond, J.A.4
Reid, G.5
Gloor, G.B.6
-
15
-
-
50649089207
-
RNA-seq: An Assessment of Technical Reproducibility and Comparison with Gene Expression Arrays
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y (2008). “RNA-seq: an Assessment of Technical Reproducibility and Comparison with Gene Expression Arrays.” Genome Res, 18(9), 1509-17. doi:10.1101/gr.079558.108.
-
(2008)
Genome Res
, vol.18
, Issue.9
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
17
-
-
84924563397
-
Bayesian-multiplicative Treatment of Count Zeros in Compositional Data Sets
-
“Bayesian-multiplicative Treatment of Count Zeros in Compositional Data Sets.” Statistical Modelling, doi:10.1177/1471082X14535524, 1-25.
-
Statistical Modelling
, pp. 1-25
-
-
-
18
-
-
84902204278
-
Control of Catalytic Efficiency by a Coevolving Network of Catalytic and Noncatalytic Residues
-
McMurrough TA, Dickson RJ, Thibert SMF, Gloor GB, Edgell DR (2014). “Control of Catalytic Efficiency by a Coevolving Network of Catalytic and Noncatalytic Residues.” Proc Natl Acad Sci U S A, 111(23), 2376-83. doi:10.1073/pnas.1322352111.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, Issue.23
, pp. 2376-2383
-
-
McMurrough, T.A.1
Dickson, R.J.2
Thibert, S.3
Gloor, G.B.4
Edgell, D.R.5
-
19
-
-
84859641038
-
Using Gene Expression Noise to Under- stand Gene Regulation
-
Munsky B, Neuert G, van Oudenaarden A (2012). “Using Gene Expression Noise to Under- stand Gene Regulation.” Science, 336(6078), 183-7. doi:10.1126/science.1216379.
-
(2012)
Science
, vol.336
, Issue.6078
, pp. 183-187
-
-
Munsky, B.1
Neuert, G.2
Van Oudenaarden, A.3
-
20
-
-
84924529798
-
ZCompositions — R Package for Multi- variate Imputation of Left-censored Data under a Compositional Approach
-
ISSN 0169-7439, http://www.sciencedirect.com/science/article/pii/S0169743915000490
-
Palarea-Albaladejo J, Martín-Fernández JA (2015). “zCompositions — R Package for Multi- variate Imputation of Left-censored Data under a Compositional Approach.” Chemomet- rics and Intelligent Laboratory Systems, 143, 85-96. ISSN 0169-7439. doi:http://dx.doi.org/10.1016/j.chemolab.2015.02.019. URL http://www.sciencedirect.com/science/article/pii/S0169743915000490.
-
(2015)
Chemomet- Rics and Intelligent Laboratory Systems
, vol.143
, pp. 85-96
-
-
Palarea-Albaladejo, J.1
Martín-Fernández, J.A.2
-
22
-
-
33750206130
-
A Strand-passage Conformation of DNA Gyrase Is Required to Allow the Bacterial Toxin, CcdB, to Access Its Binding Site
-
Smith AB, Maxwell A (2006). “A Strand-passage Conformation of DNA Gyrase Is Required to Allow the Bacterial Toxin, CcdB, to Access Its Binding Site.” Nucleic Acids Res, 34(17), 4667-76. doi:10.1093/nar/gkl636.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.17
, pp. 4667-4676
-
-
Smith, A.B.1
Maxwell, A.2
-
23
-
-
38049053535
-
Compositions: A Unified R Package to Analyze Compositional Data.”
-
ISSN 0098-3004, URL http://www.sciencedirect.com/science/article/pii/S009830040700101X
-
Van den Boogaart KG, Tolosana-Delgado R (2008). ““compositions”: A Unified R Package to Analyze Compositional Data.” Computers & Geosciences, 34(4), 320-338. ISSN 0098-3004. doi:http://dx.doi.org/10.1016/j.cageo.2006.11.017. URL http://www.sciencedirect.com/science/article/pii/S009830040700101X.
-
(2008)
Computers & Geosciences
, vol.34
, Issue.4
, pp. 320-338
-
-
Van Den Boogaart, K.G.1
Tolosana-Delgado, R.2
|