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Volumn 11, Issue 3, 2015, Pages

Proportionality: A Valid Alternative to Correlation for Relative Data

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION;

EID: 84926322943     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1004075     Document Type: Article
Times cited : (211)

References (29)
  • 1
    • 0038441481 scopus 로고    scopus 로고
    • Monitoring global messenger RNA changes in externally controlled microarray experiments
    • van de Peppel J, Kemmeren P, van Bakel H, Radonjic M, van Leenen D, et al. (2003) Monitoring global messenger RNA changes in externally controlled microarray experiments. EMBO Reports 4: 387–393. doi: 10.1038/sj.embor.embor798 12671682
    • (2003) EMBO Reports , vol.4 , pp. 387-393
    • van de Peppel, J.1    Kemmeren, P.2    van Bakel, H.3    Radonjic, M.4    van Leenen, D.5
  • 2
    • 84864579031 scopus 로고    scopus 로고
    • Microbial co-occurrence relationships in the human microbiome
    • Faust K, Sathirapongsasuti JF, Izard J, Segata N, Gevers D, et al. (2012) Microbial co-occurrence relationships in the human microbiome. PLoS Comput Biol 8: e1002606. doi: 10.1371/journal.pcbi.1002606 22807668
    • (2012) PLoS Comput Biol , vol.8 , pp. 1002606
    • Faust, K.1    Sathirapongsasuti, J.F.2    Izard, J.3    Segata, N.4    Gevers, D.5
  • 3
    • 84865733148 scopus 로고    scopus 로고
    • Inferring correlation networks from genomic survey data
    • Friedman J, Alm EJ, (2012) Inferring correlation networks from genomic survey data. PLoS Comput Biol 8: e1002687. doi: 10.1371/journal.pcbi.1002687 23028285
    • (2012) PLoS Comput Biol , vol.8 , pp. 1002687
    • Friedman, J.1    Alm, E.J.2
  • 5
    • 0000629281 scopus 로고
    • Mathematical contributions to the theory of evolution—on a form of spurious correlation which may arise when indices are used in the measurement of organs
    • Pearson K, (1897) Mathematical contributions to the theory of evolution—on a form of spurious correlation which may arise when indices are used in the measurement of organs. Proceedings of the Royal Society of London 60. doi: 10.1098/rspl.1896.0076
    • (1897) Proceedings of the Royal Society of London , vol.60
    • Pearson, K.1
  • 6
    • 84868028972 scopus 로고    scopus 로고
    • Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells
    • Marguerat S, Schmidt A, Codlin S, Chen W, Aebersold R, et al. (2012) Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell 151: 671–683. doi: 10.1016/j.cell.2012.09.019 23101633
    • (2012) Cell , vol.151 , pp. 671-683
    • Marguerat, S.1    Schmidt, A.2    Codlin, S.3    Chen, W.4    Aebersold, R.5
  • 7
    • 84868010349 scopus 로고    scopus 로고
    • Revisiting global gene expression analysis
    • Lovén J, Orlando DA, Sigova AA, Lin CY, Rahl PB, et al. (2012) Revisiting global gene expression analysis. Cell 151: 476–482. doi: 10.1016/j.cell.2012.10.012 23101621
    • (2012) Cell , vol.151 , pp. 476-482
    • Lovén, J.1    Orlando, D.A.2    Sigova, A.A.3    Lin, C.Y.4    Rahl, P.B.5
  • 12
    • 84884518215 scopus 로고    scopus 로고
    • Biostatistical approaches for the reconstruction of gene co-expression networks based on transcriptomic data
    • López-Kleine L, Leal L, López C, (2013) Biostatistical approaches for the reconstruction of gene co-expression networks based on transcriptomic data. Briefings in Functional Genomics 12: 457–467. doi: 10.1093/bfgp/elt003 23407269
    • (2013) Briefings in Functional Genomics , vol.12 , pp. 457-467
    • López-Kleine, L.1    Leal, L.2    López, C.3
  • 15
    • 37249040644 scopus 로고    scopus 로고
    • Simcluster: clustering enumeration gene expression data on the simplex space
    • Vencio R, Varuzza L, de B Pereira C, Brentani H, Shmulevich I, (2007) Simcluster: clustering enumeration gene expression data on the simplex space. BMC Bioinformatics 8: 246. doi: 10.1186/1471-2105-8-246 17625017
    • (2007) BMC Bioinformatics , vol.8 , pp. 246
    • Vencio, R.1    Varuzza, L.2    de B Pereira, C.3    Brentani, H.4    Shmulevich, I.5
  • 17
    • 0033655775 scopus 로고    scopus 로고
    • Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements
    • Butte AJ, Kohane IS, (2000) Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. In: Pacific Symposium on Biocomputing, Stanford University, volume 5. pp. 418–429. 10902190
    • (2000) Pacific Symposium on Biocomputing , vol.volume 5 , pp. 418-429
    • Butte, A.J.1    Kohane, I.S.2
  • 18
    • 78651280402 scopus 로고    scopus 로고
    • COXPRESdb: a database to compare gene coexpression in seven model animals
    • Obayashi T, Kinoshita K, (2011) COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Research 39: D1016–D1022. doi: 10.1093/nar/gkq1147 21081562
    • (2011) Nucleic Acids Research , vol.39 , pp. 1016-1022
    • Obayashi, T.1    Kinoshita, K.2
  • 19
    • 12244267727 scopus 로고    scopus 로고
    • Global transcriptional responses of fission yeast to environmental stress
    • Chen D, Toone WM, Mata J, Lyne R, Burns G, et al. (2003) Global transcriptional responses of fission yeast to environmental stress. Molecular Biology of the Cell 14: 214–229. doi: 10.1091/mbc.E02-08-0499 12529438
    • (2003) Molecular Biology of the Cell , vol.14 , pp. 214-229
    • Chen, D.1    Toone, W.M.2    Mata, J.3    Lyne, R.4    Burns, G.5
  • 20
    • 0033229970 scopus 로고    scopus 로고
    • The economics of ribosome biosynthesis in yeast
    • Warner JR, (1999) The economics of ribosome biosynthesis in yeast. Trends in Biochemical Sciences 24: 437–440. doi: 10.1016/S0968-0004(99)01460-7 10542411
    • (1999) Trends in Biochemical Sciences , vol.24 , pp. 437-440
    • Warner, J.R.1
  • 21
    • 47649125318 scopus 로고    scopus 로고
    • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation
    • López-Maury L, Marguerat S, Bähler J, (2008) Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nature Reviews Genetics 9: 583–593. doi: 10.1038/nrg2398 18591982
    • (2008) Nature Reviews Genetics , vol.9 , pp. 583-593
    • López-Maury, L.1    Marguerat, S.2    Bähler, J.3
  • 25
    • 84857392540 scopus 로고    scopus 로고
    • The case for open computer programs
    • Ince DC, Hatton L, Graham-Cumming J, (2012) The case for open computer programs. Nature 482: 485–488. doi: 10.1038/nature10836 22358837
    • (2012) Nature , vol.482 , pp. 485-488
    • Ince, D.C.1    Hatton, L.2    Graham-Cumming, J.3
  • 28
    • 0034732874 scopus 로고    scopus 로고
    • Summarizing the goodness of fit of generalized linear models for longitudinal data
    • Zheng B, (2000) Summarizing the goodness of fit of generalized linear models for longitudinal data. Statistics in Medicine 19: 1265–1275. doi: 10.1002/(SICI)1097-0258(20000530)19:10%3C1265::AID-SIM486%3E3.0.CO;2-U 10814976
    • (2000) Statistics in Medicine , vol.19 , pp. 1265-1275
    • Zheng, B.1
  • 29
    • 0024521543 scopus 로고
    • A concordance correlation coefficient to evaluate reproducibility
    • Lin LIK, (1989) A concordance correlation coefficient to evaluate reproducibility. Biometrics 45: 255–268. doi: 10.2307/2532051 2720055
    • (1989) Biometrics , vol.45 , pp. 255-268
    • Lin, L.I.K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.